RNA–Protein interactions for RNA: ENST00000417172.5

CALD1-204, Transcript of caldesmon 1, humanhuman

TSL 5 BASIC

Gene CALD1, Length 1,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-204ENST00000417172 NISCHQ9Y2I1 1504 aa38.85■■■■□ 3.81
CALD1-204ENST00000417172 CCDC180Q9P1Z9 1646 aa33.91■■■■□ 3.02
CALD1-204ENST00000417172 ZCCHC6Q5VYS8 1495 aaKnown RBP32.61■■■□□ 2.81
CALD1-204ENST00000417172 ABCC9O60706 1549 aa32.28■■■□□ 2.76
CALD1-204ENST00000417172 DCAF8L2P0C7V8 631 aa32.21■■■□□ 2.75
CALD1-204ENST00000417172 DCAF1Q9Y4B6 1507 aa32.02■■■□□ 2.72
CALD1-204ENST00000417172 SHROOM4Q9ULL8 1493 aa31.78■■■□□ 2.68
CALD1-204ENST00000417172 MYO15BQ96JP2 1530 aa31.65■■■□□ 2.66
CALD1-204ENST00000417172 NACADO15069 1562 aa31.57■■■□□ 2.64
CALD1-204ENST00000417172 RB1CC1Q8TDY2 1594 aa31.36■■■□□ 2.61
CALD1-204ENST00000417172 SCRIBQ14160 1630 aa31.31■■■□□ 2.6
CALD1-204ENST00000417172 UNC13AQ9UPW8 1703 aa30.92■■■□□ 2.54
CALD1-204ENST00000417172 BICRAQ9NZM4 1560 aa30.51■■■□□ 2.48
CALD1-204ENST00000417172 SUPT5HO00267 1087 aaKnown RBP30.45■■■□□ 2.46
CALD1-204ENST00000417172 PABPN1Q86U42 306 aaKnown RBP eCLIP30.43■■■□□ 2.46
CALD1-204ENST00000417172 CECR2Q9BXF3 1484 aa30.29■■■□□ 2.44
CALD1-204ENST00000417172 RSF1Q96T23 1441 aaPredicted RBP30.11■■■□□ 2.41
CALD1-204ENST00000417172 MROH2BQ7Z745 1585 aa30.08■■■□□ 2.41
CALD1-204ENST00000417172 BAZ1AQ9NRL2 1556 aaPredicted RBP29.98■■■□□ 2.39
CALD1-204ENST00000417172 SMARCA4P51532 1647 aa29.93■■■□□ 2.38
CALD1-204ENST00000417172 WIZO95785 1651 aa29.88■■■□□ 2.37
CALD1-204ENST00000417172 EIF4G1Q04637 1599 aaKnown RBP29.57■■■□□ 2.32
CALD1-204ENST00000417172 PEG3Q9GZU2 1588 aa29.49■■■□□ 2.31
CALD1-204ENST00000417172 TOP2AP11388 1531 aaKnown RBP29.45■■■□□ 2.31
CALD1-204ENST00000417172 ATAD2BQ9ULI0 1458 aa29.42■■■□□ 2.3
CALD1-204ENST00000417172 SMARCA2P51531 1590 aa29.36■■■□□ 2.29
CALD1-204ENST00000417172 BAZ1BQ9UIG0 1483 aaKnown RBP29.26■■■□□ 2.27
CALD1-204ENST00000417172 CC2D2AQ9P2K1 1620 aa29.2■■■□□ 2.26
CALD1-204ENST00000417172 CCDC88BA6NC98 1476 aa29.18■■■□□ 2.26
CALD1-204ENST00000417172 NCAPD3P42695 1498 aa29.14■■■□□ 2.25
CALD1-204ENST00000417172 HMGXB3Q12766 1538 aa29.11■■■□□ 2.25
CALD1-204ENST00000417172 CHIC1Q5VXU3 224 aa29.02■■■□□ 2.24
CALD1-204ENST00000417172 ABCC8Q09428 1581 aa28.63■■■□□ 2.17
CALD1-204ENST00000417172 DNAJC5BQ9UF47 199 aa28.61■■■□□ 2.17
CALD1-204ENST00000417172 TRIM41Q8WV44 630 aa28.54■■■□□ 2.16
CALD1-204ENST00000417172 CFTRP13569 1480 aa28.49■■■□□ 2.15
CALD1-204ENST00000417172 PRDM2Q13029 1718 aa28.42■■■□□ 2.14
CALD1-204ENST00000417172 CADPSQ9ULU8 1353 aa28.4■■■□□ 2.14
CALD1-204ENST00000417172 NESP48681 1621 aa28.34■■■□□ 2.13
CALD1-204ENST00000417172 WRNQ14191 1432 aaPredicted RBP eCLIP28.33■■■□□ 2.13
CALD1-204ENST00000417172 SYNJ1O43426 1573 aa28.31■■■□□ 2.12
CALD1-204ENST00000417172 LAMC3Q9Y6N6 1575 aa28.19■■■□□ 2.1
CALD1-204ENST00000417172 FAM9AQ8IZU1 332 aaPredicted RBP28.15■■■□□ 2.1
CALD1-204ENST00000417172 FANCD2Q9BXW9 1451 aa28.13■■■□□ 2.09
CALD1-204ENST00000417172 TOP2BQ02880 1626 aa28.13■■■□□ 2.09
CALD1-204ENST00000417172 CUX1P39880 1505 aa28.13■■■□□ 2.09
CALD1-204ENST00000417172 BIVM-ERCC5R4GMW8 1640 aa28.11■■■□□ 2.09
CALD1-204ENST00000417172 KIF21AQ7Z4S6 1674 aa28.01■■■□□ 2.07
CALD1-204ENST00000417172 SOGA1O94964 1423 aa28.01■■■□□ 2.07
CALD1-204ENST00000417172 LOC105371045A0A1W2PR82 267 aa28■■■□□ 2.07
CALD1-204ENST00000417172 RUSC2Q8N2Y8 1516 aa27.96■■■□□ 2.07
CALD1-204ENST00000417172 CEP164Q9UPV0 1460 aa27.96■■■□□ 2.07
CALD1-204ENST00000417172 PDS5BQ9NTI5 1447 aa27.94■■■□□ 2.06
CALD1-204ENST00000417172 EHMT2Q96KQ7 1210 aa27.86■■■□□ 2.05
CALD1-204ENST00000417172 DNMBPQ6XZF7 1577 aa27.85■■■□□ 2.05
CALD1-204ENST00000417172 URB2Q14146 1524 aaKnown RBP27.83■■■□□ 2.05
CALD1-204ENST00000417172 TOPBP1Q92547 1522 aa27.83■■■□□ 2.05
CALD1-204ENST00000417172 FGD5Q6ZNL6 1462 aa27.82■■■□□ 2.04
CALD1-204ENST00000417172 EEA1Q15075 1411 aa27.75■■■□□ 2.03
CALD1-204ENST00000417172 POLA1P09884 1462 aaPredicted RBP27.69■■■□□ 2.02
CALD1-204ENST00000417172 CSRNP3Q8WYN3 585 aa27.69■■■□□ 2.02
CALD1-204ENST00000417172 RAD54L2Q9Y4B4 1467 aa27.65■■■□□ 2.02
CALD1-204ENST00000417172 MRC2Q9UBG0 1479 aa27.64■■■□□ 2.01
CALD1-204ENST00000417172 ERCC6Q03468 1493 aa27.63■■■□□ 2.01
CALD1-204ENST00000417172 CUX2O14529 1486 aa27.6■■■□□ 2.01
CALD1-204ENST00000417172 KIF27Q86VH2 1401 aa27.58■■■□□ 2.01
CALD1-204ENST00000417172 WDR97A6NE52 1622 aa27.52■■■□□ 2
CALD1-204ENST00000417172 THOC2Q8NI27 1593 aaKnown RBP27.52■■■□□ 2
CALD1-204ENST00000417172 WDR62O43379 1518 aa27.52■■■□□ 2
CALD1-204ENST00000417172 ABCA10Q8WWZ4 1543 aa27.51■■□□□ 1.99
CALD1-204ENST00000417172 KIF21BO75037 1637 aa27.51■■□□□ 1.99
CALD1-204ENST00000417172 GOLGA3Q08378 1498 aa27.45■■□□□ 1.99
CALD1-204ENST00000417172 TARBP1Q13395 1621 aaKnown RBP27.45■■□□□ 1.98
CALD1-204ENST00000417172 RAPGEF2Q9Y4G8 1499 aa27.44■■□□□ 1.98
CALD1-204ENST00000417172 PRXQ9BXM0 1461 aa27.39■■□□□ 1.98
CALD1-204ENST00000417172 IGF1RP08069 1367 aa27.37■■□□□ 1.97
CALD1-204ENST00000417172 UBTFP17480 764 aaKnown RBP27.37■■□□□ 1.97
CALD1-204ENST00000417172 TDRD9Q8NDG6 1382 aaKnown RBP27.37■■□□□ 1.97
CALD1-204ENST00000417172 ABCA5Q8WWZ7 1642 aa27.36■■□□□ 1.97
CALD1-204ENST00000417172 TNIKQ9UKE5 1360 aa27.31■■□□□ 1.96
CALD1-204ENST00000417172 ERICH3Q5RHP9 1530 aa27.31■■□□□ 1.96
CALD1-204ENST00000417172 GAPVD1Q14C86 1478 aa27.27■■□□□ 1.96
CALD1-204ENST00000417172 IFT140Q96RY7 1462 aa27.25■■□□□ 1.95
CALD1-204ENST00000417172 ZNF608Q9ULD9 1512 aaPredicted RBP27.24■■□□□ 1.95
CALD1-204ENST00000417172 CEP162Q5TB80 1403 aa27.24■■□□□ 1.95
CALD1-204ENST00000417172 CARMIL1Q5VZK9 1371 aa27.23■■□□□ 1.95
CALD1-204ENST00000417172 AQRO60306 1485 aaKnown RBP eCLIP27.22■■□□□ 1.955e-16■■□□□ 11.9
CALD1-204ENST00000417172 PBRM1Q86U86 1689 aa27.22■■□□□ 1.95
CALD1-204ENST00000417172 CUL7Q14999 1698 aa27.18■■□□□ 1.94
CALD1-204ENST00000417172 EIF4G3O43432 1585 aaKnown RBP27.13■■□□□ 1.93
CALD1-204ENST00000417172 RANGAP1P46060 587 aaPredicted RBP27.1■■□□□ 1.93
CALD1-204ENST00000417172 GRIN2BQ13224 1484 aa27.04■■□□□ 1.92
CALD1-204ENST00000417172 CLIP1P30622 1438 aa27.03■■□□□ 1.92
CALD1-204ENST00000417172 ADAMTS12P58397 1594 aa27.01■■□□□ 1.91
CALD1-204ENST00000417172 SNAPC4Q5SXM2 1469 aa26.95■■□□□ 1.9
CALD1-204ENST00000417172 CTTNBP2Q8WZ74 1663 aa26.94■■□□□ 1.9
CALD1-204ENST00000417172 FHAD1B1AJZ9 1412 aa26.93■■□□□ 1.9
CALD1-204ENST00000417172 ARAP1Q96P48 1450 aa26.83■■□□□ 1.89
CALD1-204ENST00000417172 ARHGAP35Q9NRY4 1499 aa26.83■■□□□ 1.89
CALD1-204ENST00000417172 MAGI1Q96QZ7 1491 aaPredicted RBP26.82■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms