RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 NISCHQ9Y2I1 1504 aa22.64■■□□□ 1.22
RIF1-202ENST00000414861 CCDC180Q9P1Z9 1646 aa19.89■□□□□ 0.77
RIF1-202ENST00000414861 ABCC9O60706 1549 aa19.03■□□□□ 0.64
RIF1-202ENST00000414861 ZCCHC6Q5VYS8 1495 aaKnown RBP18.98■□□□□ 0.63
RIF1-202ENST00000414861 DCAF8L2P0C7V8 631 aa18.72■□□□□ 0.59
RIF1-202ENST00000414861 DCAF1Q9Y4B6 1507 aa18.71■□□□□ 0.59
RIF1-202ENST00000414861 MYO15BQ96JP2 1530 aa18.58■□□□□ 0.56
RIF1-202ENST00000414861 NACADO15069 1562 aa18.55■□□□□ 0.56
RIF1-202ENST00000414861 RB1CC1Q8TDY2 1594 aa18.46■□□□□ 0.55
RIF1-202ENST00000414861 SHROOM4Q9ULL8 1493 aa18.28■□□□□ 0.52
RIF1-202ENST00000414861 SCRIBQ14160 1630 aa18.26■□□□□ 0.51
RIF1-202ENST00000414861 UNC13AQ9UPW8 1703 aa18.16■□□□□ 0.5
RIF1-202ENST00000414861 BICRAQ9NZM4 1560 aa17.96■□□□□ 0.47
RIF1-202ENST00000414861 PABPN1Q86U42 306 aaKnown RBP eCLIP17.87■□□□□ 0.45
RIF1-202ENST00000414861 CECR2Q9BXF3 1484 aa17.63■□□□□ 0.41
RIF1-202ENST00000414861 MROH2BQ7Z745 1585 aa17.5■□□□□ 0.39
RIF1-202ENST00000414861 BAZ1AQ9NRL2 1556 aaPredicted RBP17.5■□□□□ 0.39
RIF1-202ENST00000414861 SMARCA4P51532 1647 aa17.48■□□□□ 0.39
RIF1-202ENST00000414861 RSF1Q96T23 1441 aaPredicted RBP17.46■□□□□ 0.39
RIF1-202ENST00000414861 EIF4G1Q04637 1599 aaKnown RBP17.42■□□□□ 0.38
RIF1-202ENST00000414861 SUPT5HO00267 1087 aaKnown RBP17.42■□□□□ 0.38
RIF1-202ENST00000414861 WIZO95785 1651 aa17.36■□□□□ 0.37
RIF1-202ENST00000414861 PEG3Q9GZU2 1588 aa17.27■□□□□ 0.36
RIF1-202ENST00000414861 ATAD2BQ9ULI0 1458 aa17.24■□□□□ 0.35
RIF1-202ENST00000414861 CC2D2AQ9P2K1 1620 aa17.23■□□□□ 0.35
RIF1-202ENST00000414861 SMARCA2P51531 1590 aa17.21■□□□□ 0.35
RIF1-202ENST00000414861 TOP2AP11388 1531 aaKnown RBP17.15■□□□□ 0.34
RIF1-202ENST00000414861 NCAPD3P42695 1498 aa17.12■□□□□ 0.33
RIF1-202ENST00000414861 BAZ1BQ9UIG0 1483 aaKnown RBP17.12■□□□□ 0.33
RIF1-202ENST00000414861 HMGXB3Q12766 1538 aa17.1■□□□□ 0.33
RIF1-202ENST00000414861 DNAJC5BQ9UF47 199 aa17.02■□□□□ 0.32
RIF1-202ENST00000414861 CCDC88BA6NC98 1476 aa16.95■□□□□ 0.3
RIF1-202ENST00000414861 CFTRP13569 1480 aa16.68■□□□□ 0.26
RIF1-202ENST00000414861 CADPSQ9ULU8 1353 aa16.65■□□□□ 0.26
RIF1-202ENST00000414861 NESP48681 1621 aa16.64■□□□□ 0.25
RIF1-202ENST00000414861 PRDM2Q13029 1718 aa16.63■□□□□ 0.25
RIF1-202ENST00000414861 LAMC3Q9Y6N6 1575 aa16.59■□□□□ 0.25
RIF1-202ENST00000414861 ABCC8Q09428 1581 aa16.55■□□□□ 0.24
RIF1-202ENST00000414861 CHIC1Q5VXU3 224 aa16.54■□□□□ 0.24
RIF1-202ENST00000414861 FANCD2Q9BXW9 1451 aa16.49■□□□□ 0.23
RIF1-202ENST00000414861 KIF21AQ7Z4S6 1674 aa16.46■□□□□ 0.23
RIF1-202ENST00000414861 PDS5BQ9NTI5 1447 aa16.44■□□□□ 0.22
RIF1-202ENST00000414861 WRNQ14191 1432 aaPredicted RBP eCLIP16.43■□□□□ 0.229e-6■■■■■ 50.1
RIF1-202ENST00000414861 SYNJ1O43426 1573 aa16.42■□□□□ 0.22
RIF1-202ENST00000414861 CEP164Q9UPV0 1460 aa16.41■□□□□ 0.22
RIF1-202ENST00000414861 CUX1P39880 1505 aa16.38■□□□□ 0.21
RIF1-202ENST00000414861 TRIM41Q8WV44 630 aa16.37■□□□□ 0.21
RIF1-202ENST00000414861 TOP2BQ02880 1626 aa16.35■□□□□ 0.21
RIF1-202ENST00000414861 BIVM-ERCC5R4GMW8 1640 aa16.35■□□□□ 0.21
RIF1-202ENST00000414861 URB2Q14146 1524 aaKnown RBP16.32■□□□□ 0.2
RIF1-202ENST00000414861 ERCC6Q03468 1493 aa16.32■□□□□ 0.2
RIF1-202ENST00000414861 DNMBPQ6XZF7 1577 aa16.31■□□□□ 0.2
RIF1-202ENST00000414861 TOPBP1Q92547 1522 aa16.29■□□□□ 0.2
RIF1-202ENST00000414861 MRC2Q9UBG0 1479 aa16.28■□□□□ 0.2
RIF1-202ENST00000414861 THOC2Q8NI27 1593 aaKnown RBP16.26■□□□□ 0.19
RIF1-202ENST00000414861 FGD5Q6ZNL6 1462 aa16.23■□□□□ 0.19
RIF1-202ENST00000414861 WDR62O43379 1518 aa16.22■□□□□ 0.19
RIF1-202ENST00000414861 POLA1P09884 1462 aaPredicted RBP16.2■□□□□ 0.18
RIF1-202ENST00000414861 SOGA1O94964 1423 aa16.16■□□□□ 0.18
RIF1-202ENST00000414861 RAD54L2Q9Y4B4 1467 aa16.14■□□□□ 0.17
RIF1-202ENST00000414861 RUSC2Q8N2Y8 1516 aa16.13■□□□□ 0.17
RIF1-202ENST00000414861 CUX2O14529 1486 aa16.11■□□□□ 0.17
RIF1-202ENST00000414861 WDR97A6NE52 1622 aa16.1■□□□□ 0.17
RIF1-202ENST00000414861 FAM9AQ8IZU1 332 aaPredicted RBP16.09■□□□□ 0.17
RIF1-202ENST00000414861 TARBP1Q13395 1621 aaKnown RBP16.09■□□□□ 0.17
RIF1-202ENST00000414861 ABCA10Q8WWZ4 1543 aa16.07■□□□□ 0.16
RIF1-202ENST00000414861 EEA1Q15075 1411 aa16.02■□□□□ 0.16
RIF1-202ENST00000414861 KIF27Q86VH2 1401 aa16.02■□□□□ 0.16
RIF1-202ENST00000414861 IFT140Q96RY7 1462 aa16.02■□□□□ 0.15
RIF1-202ENST00000414861 ABCA5Q8WWZ7 1642 aa16■□□□□ 0.15
RIF1-202ENST00000414861 TDRD9Q8NDG6 1382 aaKnown RBP15.99■□□□□ 0.15
RIF1-202ENST00000414861 ZNF608Q9ULD9 1512 aaPredicted RBP15.98■□□□□ 0.15
RIF1-202ENST00000414861 CSRNP3Q8WYN3 585 aa15.95■□□□□ 0.14
RIF1-202ENST00000414861 AQRO60306 1485 aaKnown RBP eCLIP15.94■□□□□ 0.144e-7■■■■■ 48.1
RIF1-202ENST00000414861 GAPVD1Q14C86 1478 aa15.94■□□□□ 0.14
RIF1-202ENST00000414861 EIF4G3O43432 1585 aaKnown RBP15.93■□□□□ 0.14
RIF1-202ENST00000414861 PBRM1Q86U86 1689 aa15.92■□□□□ 0.14
RIF1-202ENST00000414861 IGF1RP08069 1367 aa15.91■□□□□ 0.14
RIF1-202ENST00000414861 LOC105371045A0A1W2PR82 267 aa15.9■□□□□ 0.14
RIF1-202ENST00000414861 EHMT2Q96KQ7 1210 aa15.9■□□□□ 0.14
RIF1-202ENST00000414861 KIF21BO75037 1637 aa15.88■□□□□ 0.13
RIF1-202ENST00000414861 ERICH3Q5RHP9 1530 aa15.88■□□□□ 0.13
RIF1-202ENST00000414861 PRXQ9BXM0 1461 aa15.87■□□□□ 0.13
RIF1-202ENST00000414861 GRIN2BQ13224 1484 aa15.84■□□□□ 0.13
RIF1-202ENST00000414861 RAPGEF2Q9Y4G8 1499 aa15.84■□□□□ 0.13
RIF1-202ENST00000414861 CUL7Q14999 1698 aa15.84■□□□□ 0.13
RIF1-202ENST00000414861 CARMIL1Q5VZK9 1371 aa15.82■□□□□ 0.12
RIF1-202ENST00000414861 GOLGA3Q08378 1498 aa15.82■□□□□ 0.12
RIF1-202ENST00000414861 ADAMTS12P58397 1594 aa15.81■□□□□ 0.12
RIF1-202ENST00000414861 SNAPC4Q5SXM2 1469 aa15.8■□□□□ 0.12
RIF1-202ENST00000414861 MAGI1Q96QZ7 1491 aaPredicted RBP15.75■□□□□ 0.11
RIF1-202ENST00000414861 FHAD1B1AJZ9 1412 aa15.75■□□□□ 0.11
RIF1-202ENST00000414861 UBTFP17480 764 aaKnown RBP15.72■□□□□ 0.11
RIF1-202ENST00000414861 SYNJ2O15056 1496 aa15.7■□□□□ 0.1
RIF1-202ENST00000414861 TNIKQ9UKE5 1360 aa15.7■□□□□ 0.1
RIF1-202ENST00000414861 GRIN2AQ12879 1464 aa15.67■□□□□ 0.1
RIF1-202ENST00000414861 CHD1O14646 1710 aa15.66■□□□□ 0.1
RIF1-202ENST00000414861 CTTNBP2Q8WZ74 1663 aa15.66■□□□□ 0.1
RIF1-202ENST00000414861 CEP162Q5TB80 1403 aa15.63■□□□□ 0.09
RIF1-202ENST00000414861 FBLN2P98095 1184 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms