RNA–Protein interactions for RNA: ENST00000413582.6

RFFL-203, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 5 BASIC

Gene RFFL, Length 1,217 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-203ENST00000413582 NISCHQ9Y2I1 1504 aa24.57■■□□□ 1.52
RFFL-203ENST00000413582 ABCC9O60706 1549 aa22.44■■□□□ 1.18
RFFL-203ENST00000413582 CCDC180Q9P1Z9 1646 aa22.23■■□□□ 1.15
RFFL-203ENST00000413582 DNAJC5BQ9UF47 199 aa21.28■■□□□ 1
RFFL-203ENST00000413582 RB1CC1Q8TDY2 1594 aa21.26■□□□□ 0.99
RFFL-203ENST00000413582 NACADO15069 1562 aa21.04■□□□□ 0.96
RFFL-203ENST00000413582 UNC13AQ9UPW8 1703 aa20.83■□□□□ 0.92
RFFL-203ENST00000413582 PABPN1Q86U42 306 aaKnown RBP eCLIP20.8■□□□□ 0.92
RFFL-203ENST00000413582 DCAF8L2P0C7V8 631 aa20.72■□□□□ 0.91
RFFL-203ENST00000413582 BICRAQ9NZM4 1560 aa20.68■□□□□ 0.9
RFFL-203ENST00000413582 MYO15BQ96JP2 1530 aa20.68■□□□□ 0.9
RFFL-203ENST00000413582 SHROOM4Q9ULL8 1493 aa20.38■□□□□ 0.85
RFFL-203ENST00000413582 ZCCHC6Q5VYS8 1495 aaKnown RBP20.33■□□□□ 0.85
RFFL-203ENST00000413582 DCAF1Q9Y4B6 1507 aa20.3■□□□□ 0.84
RFFL-203ENST00000413582 CC2D2AQ9P2K1 1620 aa20.29■□□□□ 0.84
RFFL-203ENST00000413582 CECR2Q9BXF3 1484 aa20.25■□□□□ 0.83
RFFL-203ENST00000413582 SCRIBQ14160 1630 aa20.2■□□□□ 0.82
RFFL-203ENST00000413582 EIF4G1Q04637 1599 aaKnown RBP20.18■□□□□ 0.82
RFFL-203ENST00000413582 DNAJC5Q9H3Z4 198 aa19.74■□□□□ 0.75
RFFL-203ENST00000413582 CUX2O14529 1486 aa19.49■□□□□ 0.71
RFFL-203ENST00000413582 NCAPD3P42695 1498 aa19.41■□□□□ 0.7
RFFL-203ENST00000413582 ERCC6Q03468 1493 aa19.39■□□□□ 0.69
RFFL-203ENST00000413582 ATAD2BQ9ULI0 1458 aa19.32■□□□□ 0.68
RFFL-203ENST00000413582 HMGXB3Q12766 1538 aa19.29■□□□□ 0.68
RFFL-203ENST00000413582 SMARCA2P51531 1590 aa19.26■□□□□ 0.67
RFFL-203ENST00000413582 SMARCA4P51532 1647 aa19.25■□□□□ 0.67
RFFL-203ENST00000413582 NESP48681 1621 aa19.22■□□□□ 0.67
RFFL-203ENST00000413582 THOC2Q8NI27 1593 aaKnown RBP19.13■□□□□ 0.65
RFFL-203ENST00000413582 BAZ1BQ9UIG0 1483 aaKnown RBP19.11■□□□□ 0.65
RFFL-203ENST00000413582 BAZ1AQ9NRL2 1556 aaPredicted RBP19.1■□□□□ 0.65
RFFL-203ENST00000413582 PEG3Q9GZU2 1588 aa19.08■□□□□ 0.65
RFFL-203ENST00000413582 LAMC3Q9Y6N6 1575 aa19.04■□□□□ 0.64
RFFL-203ENST00000413582 KIF21AQ7Z4S6 1674 aa18.98■□□□□ 0.63
RFFL-203ENST00000413582 MROH2BQ7Z745 1585 aa18.93■□□□□ 0.62
RFFL-203ENST00000413582 PDS5BQ9NTI5 1447 aa18.9■□□□□ 0.62
RFFL-203ENST00000413582 MRC2Q9UBG0 1479 aa18.79■□□□□ 0.6
RFFL-203ENST00000413582 CADPSQ9ULU8 1353 aa18.79■□□□□ 0.6
RFFL-203ENST00000413582 WDR62O43379 1518 aa18.78■□□□□ 0.6
RFFL-203ENST00000413582 TRIM41Q8WV44 630 aa18.72■□□□□ 0.59
RFFL-203ENST00000413582 WIZO95785 1651 aa18.69■□□□□ 0.58
RFFL-203ENST00000413582 CEP164Q9UPV0 1460 aa18.65■□□□□ 0.58
RFFL-203ENST00000413582 FANCD2Q9BXW9 1451 aa18.6■□□□□ 0.57
RFFL-203ENST00000413582 CFTRP13569 1480 aa18.54■□□□□ 0.56
RFFL-203ENST00000413582 URB2Q14146 1524 aaKnown RBP18.49■□□□□ 0.55
RFFL-203ENST00000413582 OSCARQ8IYS5 282 aa18.46■□□□□ 0.55
RFFL-203ENST00000413582 TOP2AP11388 1531 aaKnown RBP18.45■□□□□ 0.54
RFFL-203ENST00000413582 RSF1Q96T23 1441 aaPredicted RBP18.41■□□□□ 0.54
RFFL-203ENST00000413582 PRDM2Q13029 1718 aa18.4■□□□□ 0.54
RFFL-203ENST00000413582 RIMBP3CA6NJZ7 1639 aa18.35■□□□□ 0.53
RFFL-203ENST00000413582 RIMBP3BA6NNM3 1639 aa18.35■□□□□ 0.53
RFFL-203ENST00000413582 RIMBP3Q9UFD9 1639 aa18.35■□□□□ 0.53
RFFL-203ENST00000413582 ZNF608Q9ULD9 1512 aaPredicted RBP18.29■□□□□ 0.52
RFFL-203ENST00000413582 IFT140Q96RY7 1462 aa18.28■□□□□ 0.52
RFFL-203ENST00000413582 ARHGEF11O15085 1522 aa18.26■□□□□ 0.51
RFFL-203ENST00000413582 TOPBP1Q92547 1522 aa18.23■□□□□ 0.51
RFFL-203ENST00000413582 EIF4G3O43432 1585 aaKnown RBP18.21■□□□□ 0.51
RFFL-203ENST00000413582 CCDC88BA6NC98 1476 aa18.2■□□□□ 0.5
RFFL-203ENST00000413582 DNMBPQ6XZF7 1577 aa18.14■□□□□ 0.49
RFFL-203ENST00000413582 ABCC8Q09428 1581 aa18.13■□□□□ 0.49
RFFL-203ENST00000413582 CHD1O14646 1710 aa18.13■□□□□ 0.49
RFFL-203ENST00000413582 TARBP1Q13395 1621 aaKnown RBP18.11■□□□□ 0.49
RFFL-203ENST00000413582 ARAP1Q96P48 1450 aa18.07■□□□□ 0.48
RFFL-203ENST00000413582 AQRO60306 1485 aaKnown RBP eCLIP18.06■□□□□ 0.485e-10■■■■■ 39.2
RFFL-203ENST00000413582 CYB5RLQ6IPT4 315 aa18.04■□□□□ 0.48
RFFL-203ENST00000413582 POLA1P09884 1462 aaPredicted RBP18.02■□□□□ 0.48
RFFL-203ENST00000413582 RAD54L2Q9Y4B4 1467 aa17.94■□□□□ 0.46
RFFL-203ENST00000413582 FBLN2P98095 1184 aa17.93■□□□□ 0.46
RFFL-203ENST00000413582 CLASP1Q7Z460 1538 aa17.93■□□□□ 0.46
RFFL-203ENST00000413582 WDR97A6NE52 1622 aa17.91■□□□□ 0.46
RFFL-203ENST00000413582 TRHP20396 242 aaPredicted RBP17.91■□□□□ 0.46
RFFL-203ENST00000413582 SNAPC4Q5SXM2 1469 aa17.9■□□□□ 0.46
RFFL-203ENST00000413582 TDRD9Q8NDG6 1382 aaKnown RBP17.89■□□□□ 0.45
RFFL-203ENST00000413582 SOGA1O94964 1423 aa17.88■□□□□ 0.45
RFFL-203ENST00000413582 CHIC1Q5VXU3 224 aa17.87■□□□□ 0.45
RFFL-203ENST00000413582 FGD5Q6ZNL6 1462 aa17.87■□□□□ 0.45
RFFL-203ENST00000413582 SYNJ1O43426 1573 aa17.85■□□□□ 0.45
RFFL-203ENST00000413582 MAGI1Q96QZ7 1491 aaPredicted RBP17.84■□□□□ 0.45
RFFL-203ENST00000413582 CUX1P39880 1505 aa17.82■□□□□ 0.44
RFFL-203ENST00000413582 GRIN2BQ13224 1484 aa17.79■□□□□ 0.44
RFFL-203ENST00000413582 SYNJ2O15056 1496 aa17.78■□□□□ 0.44
RFFL-203ENST00000413582 CHMP7Q8WUX9 453 aaPredicted RBP17.76■□□□□ 0.43
RFFL-203ENST00000413582 PBRM1Q86U86 1689 aa17.75■□□□□ 0.43
RFFL-203ENST00000413582 GAPVD1Q14C86 1478 aa17.69■□□□□ 0.42
RFFL-203ENST00000413582 ABCA5Q8WWZ7 1642 aa17.69■□□□□ 0.42
RFFL-203ENST00000413582 ABCA10Q8WWZ4 1543 aa17.65■□□□□ 0.42
RFFL-203ENST00000413582 AEBP2Q6ZN18 517 aaPredicted RBP17.64■□□□□ 0.41
RFFL-203ENST00000413582 ERCC6L2Q5T890 1561 aa17.61■□□□□ 0.41
RFFL-203ENST00000413582 GRIN2AQ12879 1464 aa17.58■□□□□ 0.41
RFFL-203ENST00000413582 ADAMTS12P58397 1594 aa17.57■□□□□ 0.4
RFFL-203ENST00000413582 CEP170Q5SW79 1584 aa17.56■□□□□ 0.4
RFFL-203ENST00000413582 NUP160Q12769 1436 aa17.55■□□□□ 0.4
RFFL-203ENST00000413582 SHROOM2Q13796 1616 aa17.53■□□□□ 0.4
RFFL-203ENST00000413582 WRNQ14191 1432 aaPredicted RBP eCLIP17.48■□□□□ 0.39
RFFL-203ENST00000413582 BIVM-ERCC5R4GMW8 1640 aa17.47■□□□□ 0.39
RFFL-203ENST00000413582 KIF13AQ9H1H9 1805 aa17.46■□□□□ 0.39
RFFL-203ENST00000413582 TOP2BQ02880 1626 aa17.46■□□□□ 0.39
RFFL-203ENST00000413582 FHAD1B1AJZ9 1412 aa17.45■□□□□ 0.38
RFFL-203ENST00000413582 ERICH3Q5RHP9 1530 aa17.42■□□□□ 0.38
RFFL-203ENST00000413582 PRG4Q92954 1404 aaPredicted RBP17.36■□□□□ 0.37
RFFL-203ENST00000413582 RUSC2Q8N2Y8 1516 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms