RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 NISCHQ9Y2I1 1504 aa28.4■■■□□ 2.14
CHMP3-204ENST00000409727 CCDC180Q9P1Z9 1646 aa24.77■■□□□ 1.56
CHMP3-204ENST00000409727 AEBP2Q6ZN18 517 aaPredicted RBP23.97■■□□□ 1.43
CHMP3-204ENST00000409727 ZCCHC6Q5VYS8 1495 aaKnown RBP23.82■■□□□ 1.4
CHMP3-204ENST00000409727 DCAF8L2P0C7V8 631 aa23.7■■□□□ 1.38
CHMP3-204ENST00000409727 ABCC9O60706 1549 aa23.69■■□□□ 1.38
CHMP3-204ENST00000409727 DCAF1Q9Y4B6 1507 aa23.39■■□□□ 1.34
CHMP3-204ENST00000409727 SHROOM4Q9ULL8 1493 aa23.27■■□□□ 1.31
CHMP3-204ENST00000409727 CHIC1Q5VXU3 224 aa23.24■■□□□ 1.31
CHMP3-204ENST00000409727 MYO15BQ96JP2 1530 aa23.15■■□□□ 1.3
CHMP3-204ENST00000409727 NACADO15069 1562 aa23.12■■□□□ 1.29
CHMP3-204ENST00000409727 RB1CC1Q8TDY2 1594 aa22.98■■□□□ 1.27
CHMP3-204ENST00000409727 SCRIBQ14160 1630 aa22.89■■□□□ 1.26
CHMP3-204ENST00000409727 UNC13AQ9UPW8 1703 aa22.53■■□□□ 1.2
CHMP3-204ENST00000409727 PABPN1Q86U42 306 aaKnown RBP eCLIP22.36■■□□□ 1.17
CHMP3-204ENST00000409727 SUPT5HO00267 1087 aaKnown RBP22.3■■□□□ 1.16
CHMP3-204ENST00000409727 BICRAQ9NZM4 1560 aa22.29■■□□□ 1.16
CHMP3-204ENST00000409727 CECR2Q9BXF3 1484 aa22.14■■□□□ 1.14
CHMP3-204ENST00000409727 RSF1Q96T23 1441 aaPredicted RBP22.01■■□□□ 1.11
CHMP3-204ENST00000409727 MROH2BQ7Z745 1585 aa21.98■■□□□ 1.11
CHMP3-204ENST00000409727 BAZ1AQ9NRL2 1556 aaPredicted RBP21.94■■□□□ 1.1
CHMP3-204ENST00000409727 SMARCA4P51532 1647 aa21.87■■□□□ 1.09
CHMP3-204ENST00000409727 WIZO95785 1651 aa21.81■■□□□ 1.08
CHMP3-204ENST00000409727 EIF4G1Q04637 1599 aaKnown RBP21.66■■□□□ 1.06
CHMP3-204ENST00000409727 PEG3Q9GZU2 1588 aa21.55■■□□□ 1.04
CHMP3-204ENST00000409727 ATAD2BQ9ULI0 1458 aa21.54■■□□□ 1.04
CHMP3-204ENST00000409727 TOP2AP11388 1531 aaKnown RBP21.53■■□□□ 1.04
CHMP3-204ENST00000409727 SMARCA2P51531 1590 aa21.51■■□□□ 1.03
CHMP3-204ENST00000409727 BAZ1BQ9UIG0 1483 aaKnown RBP21.44■■□□□ 1.02
CHMP3-204ENST00000409727 CC2D2AQ9P2K1 1620 aa21.38■■□□□ 1.01
CHMP3-204ENST00000409727 NCAPD3P42695 1498 aa21.35■■□□□ 1.01
CHMP3-204ENST00000409727 CCDC88BA6NC98 1476 aa21.34■■□□□ 1.01
CHMP3-204ENST00000409727 HMGXB3Q12766 1538 aa21.3■■□□□ 1
CHMP3-204ENST00000409727 DNAJC5BQ9UF47 199 aa21.02■□□□□ 0.96
CHMP3-204ENST00000409727 TRIM41Q8WV44 630 aa20.93■□□□□ 0.94
CHMP3-204ENST00000409727 ABCC8Q09428 1581 aa20.9■□□□□ 0.94
CHMP3-204ENST00000409727 CFTRP13569 1480 aa20.86■□□□□ 0.93
CHMP3-204ENST00000409727 CADPSQ9ULU8 1353 aa20.83■□□□□ 0.92
CHMP3-204ENST00000409727 NESP48681 1621 aa20.75■□□□□ 0.91
CHMP3-204ENST00000409727 WRNQ14191 1432 aaPredicted RBP eCLIP20.74■□□□□ 0.91
CHMP3-204ENST00000409727 PRDM2Q13029 1718 aa20.71■□□□□ 0.91
CHMP3-204ENST00000409727 SYNJ1O43426 1573 aa20.66■□□□□ 0.9
CHMP3-204ENST00000409727 LAMC3Q9Y6N6 1575 aa20.65■□□□□ 0.9
CHMP3-204ENST00000409727 FAM9AQ8IZU1 332 aaPredicted RBP20.62■□□□□ 0.89
CHMP3-204ENST00000409727 FANCD2Q9BXW9 1451 aa20.62■□□□□ 0.89
CHMP3-204ENST00000409727 CUX1P39880 1505 aa20.55■□□□□ 0.88
CHMP3-204ENST00000409727 TOP2BQ02880 1626 aa20.54■□□□□ 0.88
CHMP3-204ENST00000409727 PDS5BQ9NTI5 1447 aa20.52■□□□□ 0.88
CHMP3-204ENST00000409727 BIVM-ERCC5R4GMW8 1640 aa20.51■□□□□ 0.87
CHMP3-204ENST00000409727 CEP164Q9UPV0 1460 aa20.5■□□□□ 0.87
CHMP3-204ENST00000409727 SOGA1O94964 1423 aa20.47■□□□□ 0.87
CHMP3-204ENST00000409727 KIF21AQ7Z4S6 1674 aa20.47■□□□□ 0.87
CHMP3-204ENST00000409727 LOC105371045A0A1W2PR82 267 aa20.46■□□□□ 0.87
CHMP3-204ENST00000409727 PHF23Q9BUL5 403 aaPredicted RBP20.46■□□□□ 0.87
CHMP3-204ENST00000409727 EHMT2Q96KQ7 1210 aa20.43■□□□□ 0.86
CHMP3-204ENST00000409727 RUSC2Q8N2Y8 1516 aa20.42■□□□□ 0.86
CHMP3-204ENST00000409727 DNMBPQ6XZF7 1577 aa20.38■□□□□ 0.85
CHMP3-204ENST00000409727 TOPBP1Q92547 1522 aa20.38■□□□□ 0.85
CHMP3-204ENST00000409727 URB2Q14146 1524 aaKnown RBP20.36■□□□□ 0.85
CHMP3-204ENST00000409727 FGD5Q6ZNL6 1462 aa20.36■□□□□ 0.85
CHMP3-204ENST00000409727 ERCC6Q03468 1493 aa20.33■□□□□ 0.84
CHMP3-204ENST00000409727 EEA1Q15075 1411 aa20.3■□□□□ 0.84
CHMP3-204ENST00000409727 CSRNP3Q8WYN3 585 aa20.28■□□□□ 0.84
CHMP3-204ENST00000409727 SENP3Q9H4L4 574 aaPredicted RBP20.28■□□□□ 0.84
CHMP3-204ENST00000409727 POLA1P09884 1462 aaPredicted RBP20.27■□□□□ 0.84
CHMP3-204ENST00000409727 MRC2Q9UBG0 1479 aa20.27■□□□□ 0.84
CHMP3-204ENST00000409727 RAD54L2Q9Y4B4 1467 aa20.25■□□□□ 0.83
CHMP3-204ENST00000409727 CUX2O14529 1486 aa20.22■□□□□ 0.83
CHMP3-204ENST00000409727 KIF27Q86VH2 1401 aa20.21■□□□□ 0.83
CHMP3-204ENST00000409727 WDR62O43379 1518 aa20.15■□□□□ 0.82
CHMP3-204ENST00000409727 ABCA10Q8WWZ4 1543 aa20.13■□□□□ 0.81
CHMP3-204ENST00000409727 THOC2Q8NI27 1593 aaKnown RBP20.13■□□□□ 0.81
CHMP3-204ENST00000409727 UBTFP17480 764 aaKnown RBP20.08■□□□□ 0.81
CHMP3-204ENST00000409727 TDRD9Q8NDG6 1382 aaKnown RBP20.08■□□□□ 0.8
CHMP3-204ENST00000409727 GOLGA3Q08378 1498 aa20.07■□□□□ 0.8
CHMP3-204ENST00000409727 WDR97A6NE52 1622 aa20.07■□□□□ 0.8
CHMP3-204ENST00000409727 KIF21BO75037 1637 aa20.07■□□□□ 0.8
CHMP3-204ENST00000409727 TARBP1Q13395 1621 aaKnown RBP20.06■□□□□ 0.8
CHMP3-204ENST00000409727 RAPGEF2Q9Y4G8 1499 aa20.05■□□□□ 0.8
CHMP3-204ENST00000409727 IGF1RP08069 1367 aa20.05■□□□□ 0.8
CHMP3-204ENST00000409727 PRXQ9BXM0 1461 aa20.01■□□□□ 0.79
CHMP3-204ENST00000409727 IFT140Q96RY7 1462 aa19.99■□□□□ 0.79
CHMP3-204ENST00000409727 ABCA5Q8WWZ7 1642 aa19.99■□□□□ 0.79
CHMP3-204ENST00000409727 GAPVD1Q14C86 1478 aa19.98■□□□□ 0.79
CHMP3-204ENST00000409727 TNIKQ9UKE5 1360 aa19.97■□□□□ 0.79
CHMP3-204ENST00000409727 CARMIL1Q5VZK9 1371 aa19.96■□□□□ 0.79
CHMP3-204ENST00000409727 AQRO60306 1485 aaKnown RBP eCLIP19.96■□□□□ 0.794e-6■■□□□ 13.9
CHMP3-204ENST00000409727 ZNF608Q9ULD9 1512 aaPredicted RBP19.95■□□□□ 0.78
CHMP3-204ENST00000409727 ERICH3Q5RHP9 1530 aa19.94■□□□□ 0.78
CHMP3-204ENST00000409727 RANGAP1P46060 587 aaPredicted RBP19.9■□□□□ 0.78
CHMP3-204ENST00000409727 CEP162Q5TB80 1403 aa19.9■□□□□ 0.78
CHMP3-204ENST00000409727 PBRM1Q86U86 1689 aa19.87■□□□□ 0.77
CHMP3-204ENST00000409727 CUL7Q14999 1698 aa19.87■□□□□ 0.77
CHMP3-204ENST00000409727 EIF4G3O43432 1585 aaKnown RBP19.85■□□□□ 0.77
CHMP3-204ENST00000409727 GRIN2BQ13224 1484 aa19.83■□□□□ 0.76
CHMP3-204ENST00000409727 CLIP1P30622 1438 aa19.77■□□□□ 0.76
CHMP3-204ENST00000409727 SNAPC4Q5SXM2 1469 aa19.75■□□□□ 0.75
CHMP3-204ENST00000409727 ADAMTS12P58397 1594 aa19.75■□□□□ 0.75
CHMP3-204ENST00000409727 FHAD1B1AJZ9 1412 aa19.74■□□□□ 0.75
CHMP3-204ENST00000409727 FBLN2P98095 1184 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms