RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 DCAF8L2P0C7V8 631 aa13.74□□□□□ -0.21
SCN9A-202ENST00000409435 NISCHQ9Y2I1 1504 aa12.89□□□□□ -0.35
SCN9A-202ENST00000409435 FAM9AQ8IZU1 332 aaPredicted RBP12.37□□□□□ -0.43
SCN9A-202ENST00000409435 SHROOM4Q9ULL8 1493 aa12□□□□□ -0.49
SCN9A-202ENST00000409435 ABCC9O60706 1549 aa11.99□□□□□ -0.49
SCN9A-202ENST00000409435 SUPT5HO00267 1087 aaKnown RBP11.94□□□□□ -0.5
SCN9A-202ENST00000409435 PABPN1Q86U42 306 aaKnown RBP eCLIP11.78□□□□□ -0.52
SCN9A-202ENST00000409435 PELP1Q8IZL8 1130 aaKnown RBP11.77□□□□□ -0.52
SCN9A-202ENST00000409435 MYT1Q01538 1121 aa11.74□□□□□ -0.53
SCN9A-202ENST00000409435 MYT1LQ9UL68 1186 aa11.67□□□□□ -0.54
SCN9A-202ENST00000409435 APLP2Q06481 763 aa11.65□□□□□ -0.54
SCN9A-202ENST00000409435 EHMT2Q96KQ7 1210 aa11.64□□□□□ -0.55
SCN9A-202ENST00000409435 ATP1B4Q9UN42 357 aaPredicted RBP11.62□□□□□ -0.55
SCN9A-202ENST00000409435 TTBK1Q5TCY1 1321 aaPredicted RBP11.59□□□□□ -0.55
SCN9A-202ENST00000409435 RANGAP1P46060 587 aaPredicted RBP11.51□□□□□ -0.57
SCN9A-202ENST00000409435 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.49□□□□□ -0.57
SCN9A-202ENST00000409435 HNRNPUL2Q1KMD3 747 aaKnown RBP11.49□□□□□ -0.57
SCN9A-202ENST00000409435 FBLN2P98095 1184 aa11.47□□□□□ -0.57
SCN9A-202ENST00000409435 ERICH6Q7L0X2 663 aa11.28□□□□□ -0.6
SCN9A-202ENST00000409435 NPM1P06748 294 aaKnown RBP eCLIP11.28□□□□□ -0.6
SCN9A-202ENST00000409435 CHIC1Q5VXU3 224 aa11.26□□□□□ -0.61
SCN9A-202ENST00000409435 UBTFP17480 764 aaKnown RBP11.22□□□□□ -0.61
SCN9A-202ENST00000409435 TRIM41Q8WV44 630 aa11.19□□□□□ -0.62
SCN9A-202ENST00000409435 TRHP20396 242 aaPredicted RBP11.18□□□□□ -0.62
SCN9A-202ENST00000409435 CCER1Q8TC90 406 aaPredicted RBP11.17□□□□□ -0.62
SCN9A-202ENST00000409435 ESF1Q9H501 851 aaKnown RBP11.15□□□□□ -0.62
SCN9A-202ENST00000409435 AEBP2Q6ZN18 517 aaPredicted RBP11.13□□□□□ -0.63
SCN9A-202ENST00000409435 ERCC6Q03468 1493 aa11.11□□□□□ -0.63
SCN9A-202ENST00000409435 PLPPR3Q6T4P5 718 aa11.09□□□□□ -0.63
SCN9A-202ENST00000409435 RB1CC1Q8TDY2 1594 aa11.09□□□□□ -0.63
SCN9A-202ENST00000409435 BCANQ96GW7 911 aa11.02□□□□□ -0.65
SCN9A-202ENST00000409435 SCRIBQ14160 1630 aa10.99□□□□□ -0.65
SCN9A-202ENST00000409435 CHMP7Q8WUX9 453 aaPredicted RBP10.95□□□□□ -0.66
SCN9A-202ENST00000409435 CENPBP07199 599 aaPredicted RBP10.93□□□□□ -0.66
SCN9A-202ENST00000409435 YTHDC1Q96MU7 727 aaKnown RBP10.9□□□□□ -0.66
SCN9A-202ENST00000409435 CCDC180Q9P1Z9 1646 aa10.85□□□□□ -0.67
SCN9A-202ENST00000409435 ARID4BQ4LE39 1312 aaPredicted RBP10.83□□□□□ -0.68
SCN9A-202ENST00000409435 STAG3Q9UJ98 1225 aa10.81□□□□□ -0.68
SCN9A-202ENST00000409435 SLC4A1APQ9BWU0 796 aaKnown RBP10.8□□□□□ -0.68
SCN9A-202ENST00000409435 NACADO15069 1562 aa10.78□□□□□ -0.68
SCN9A-202ENST00000409435 ARID3CA6NKF2 412 aa10.78□□□□□ -0.68
SCN9A-202ENST00000409435 CDK11AQ9UQ88 783 aaPredicted RBP10.76□□□□□ -0.69
SCN9A-202ENST00000409435 ITGAEP38570 1179 aa10.71□□□□□ -0.69
SCN9A-202ENST00000409435 ZNF777Q9ULD5 760 aaPredicted RBP10.68□□□□□ -0.7
SCN9A-202ENST00000409435 CECR2Q9BXF3 1484 aa10.67□□□□□ -0.7
SCN9A-202ENST00000409435 SCAF1Q9H7N4 1312 aaKnown RBP10.65□□□□□ -0.7
SCN9A-202ENST00000409435 P3H3Q8IVL6 736 aa10.64□□□□□ -0.71
SCN9A-202ENST00000409435 NEFLP07196 543 aa10.63□□□□□ -0.71
SCN9A-202ENST00000409435 KCNH8Q96L42 1107 aa10.62□□□□□ -0.71
SCN9A-202ENST00000409435 C14orf37Q86TY3 774 aa10.61□□□□□ -0.71
SCN9A-202ENST00000409435 BAZ1BQ9UIG0 1483 aaKnown RBP10.6□□□□□ -0.71
SCN9A-202ENST00000409435 POLR3GLQ9BT43 218 aa10.59□□□□□ -0.71
SCN9A-202ENST00000409435 CHGAP10645 457 aaKnown RBP10.58□□□□□ -0.72
SCN9A-202ENST00000409435 OSCARQ8IYS5 282 aa10.58□□□□□ -0.72
SCN9A-202ENST00000409435 TRIM52Q96A61 297 aa10.58□□□□□ -0.72
SCN9A-202ENST00000409435 FAM50AQ14320 339 aaKnown RBP10.57□□□□□ -0.72
SCN9A-202ENST00000409435 PDS5BQ9NTI5 1447 aa10.57□□□□□ -0.72
SCN9A-202ENST00000409435 HAP1P54257 671 aaPredicted RBP10.53□□□□□ -0.72
SCN9A-202ENST00000409435 CYB5RLQ6IPT4 315 aa10.52□□□□□ -0.73
SCN9A-202ENST00000409435 ZEB1P37275 1124 aaPredicted RBP10.52□□□□□ -0.73
SCN9A-202ENST00000409435 DAXXQ9UER7 740 aaPredicted RBP10.51□□□□□ -0.73
SCN9A-202ENST00000409435 SENP3Q9H4L4 574 aaPredicted RBP10.49□□□□□ -0.73
SCN9A-202ENST00000409435 A0A0G2JS52 829 aa10.49□□□□□ -0.73
SCN9A-202ENST00000409435 PPP1R15AO75807 674 aaPredicted RBP10.49□□□□□ -0.73
SCN9A-202ENST00000409435 SLC24A1O60721 1099 aa10.48□□□□□ -0.73
SCN9A-202ENST00000409435 PLEKHD1A6NEE1 506 aa10.45□□□□□ -0.74
SCN9A-202ENST00000409435 RTL5Q5HYW3 569 aaPredicted RBP10.45□□□□□ -0.74
SCN9A-202ENST00000409435 MLECQ14165 292 aa10.43□□□□□ -0.74
SCN9A-202ENST00000409435 PCGF6Q9BYE7 350 aa10.43□□□□□ -0.74
SCN9A-202ENST00000409435 ZCCHC6Q5VYS8 1495 aaKnown RBP10.42□□□□□ -0.74
SCN9A-202ENST00000409435 PPARGC1BQ86YN6 1023 aaKnown RBP10.39□□□□□ -0.75
SCN9A-202ENST00000409435 TSPY4P0CV99 314 aa10.39□□□□□ -0.75
SCN9A-202ENST00000409435 TSPY10P0CW01 314 aa10.39□□□□□ -0.75
SCN9A-202ENST00000409435 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.39□□□□□ -0.758e-7■□□□□ 11.3
SCN9A-202ENST00000409435 GLIPR1L2Q4G1C9 344 aa10.36□□□□□ -0.75
SCN9A-202ENST00000409435 PLEKHG5O94827 1062 aa10.35□□□□□ -0.75
SCN9A-202ENST00000409435 ZNF326Q5BKZ1 582 aaKnown RBP10.35□□□□□ -0.75
SCN9A-202ENST00000409435 NEFMP07197 916 aa10.32□□□□□ -0.76
SCN9A-202ENST00000409435 PHF23Q9BUL5 403 aaPredicted RBP10.32□□□□□ -0.76
SCN9A-202ENST00000409435 ZBTB7CA1YPR0 619 aa10.31□□□□□ -0.76
SCN9A-202ENST00000409435 DCAF8L1A6NGE4 600 aa10.31□□□□□ -0.76
SCN9A-202ENST00000409435 CNGB1Q14028 1251 aaPredicted RBP10.31□□□□□ -0.76
SCN9A-202ENST00000409435 SMARCA2P51531 1590 aa10.3□□□□□ -0.76
SCN9A-202ENST00000409435 CSRNP3Q8WYN3 585 aa10.3□□□□□ -0.76
SCN9A-202ENST00000409435 HDGFP51858 240 aaKnown RBP10.29□□□□□ -0.76
SCN9A-202ENST00000409435 NPM2Q86SE8 214 aaKnown RBP10.29□□□□□ -0.76
SCN9A-202ENST00000409435 FOXD1Q16676 465 aa10.28□□□□□ -0.76
SCN9A-202ENST00000409435 CARMIL2Q6F5E8 1435 aa10.26□□□□□ -0.77
SCN9A-202ENST00000409435 LMOD2Q6P5Q4 547 aa10.25□□□□□ -0.77
SCN9A-202ENST00000409435 CEP164Q9UPV0 1460 aa10.24□□□□□ -0.77
SCN9A-202ENST00000409435 FAM69CQ0P6D2 419 aa10.24□□□□□ -0.77
SCN9A-202ENST00000409435 BAZ1AQ9NRL2 1556 aaPredicted RBP10.23□□□□□ -0.77
SCN9A-202ENST00000409435 MEX3CQ5U5Q3 659 aaKnown RBP10.23□□□□□ -0.77
SCN9A-202ENST00000409435 EIF4G1Q04637 1599 aaKnown RBP10.22□□□□□ -0.77
SCN9A-202ENST00000409435 ZNF316A6NFI3 1004 aaPredicted RBP10.22□□□□□ -0.77
SCN9A-202ENST00000409435 DNAJC5BQ9UF47 199 aa10.19□□□□□ -0.78
SCN9A-202ENST00000409435 CADPSQ9ULU8 1353 aa10.18□□□□□ -0.78
SCN9A-202ENST00000409435 CCDC9Q9Y3X0 531 aaKnown RBP10.18□□□□□ -0.78
SCN9A-202ENST00000409435 MTUS2Q5JR59 1369 aa10.18□□□□□ -0.78
SCN9A-202ENST00000409435 SOGA1O94964 1423 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms