RNA–Protein interactions for RNA: ENST00000409020.5

NIF3L1-202, Transcript of NGG1 interacting factor 3 like 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene NIF3L1, Length 1,680 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-202ENST00000409020 NISCHQ9Y2I1 1504 aa23.88■■□□□ 1.41
NIF3L1-202ENST00000409020 CCDC180Q9P1Z9 1646 aa21.27■■□□□ 1
NIF3L1-202ENST00000409020 ABCC9O60706 1549 aa21.18■□□□□ 0.98
NIF3L1-202ENST00000409020 AEBP2Q6ZN18 517 aaPredicted RBP20.83■□□□□ 0.92
NIF3L1-202ENST00000409020 CHIC1Q5VXU3 224 aa20.72■□□□□ 0.91
NIF3L1-202ENST00000409020 RB1CC1Q8TDY2 1594 aa20.16■□□□□ 0.82
NIF3L1-202ENST00000409020 DCAF8L2P0C7V8 631 aa20.1■□□□□ 0.81
NIF3L1-202ENST00000409020 NACADO15069 1562 aa20.06■□□□□ 0.8
NIF3L1-202ENST00000409020 ZCCHC6Q5VYS8 1495 aaKnown RBP19.85■□□□□ 0.77
NIF3L1-202ENST00000409020 MYO15BQ96JP2 1530 aa19.84■□□□□ 0.77
NIF3L1-202ENST00000409020 PABPN1Q86U42 306 aaKnown RBP eCLIP19.78■□□□□ 0.76
NIF3L1-202ENST00000409020 UNC13AQ9UPW8 1703 aa19.75■□□□□ 0.75
NIF3L1-202ENST00000409020 DNAJC5BQ9UF47 199 aa19.73■□□□□ 0.75
NIF3L1-202ENST00000409020 DCAF1Q9Y4B6 1507 aa19.68■□□□□ 0.74
NIF3L1-202ENST00000409020 BICRAQ9NZM4 1560 aa19.64■□□□□ 0.74
NIF3L1-202ENST00000409020 SCRIBQ14160 1630 aa19.5■□□□□ 0.71
NIF3L1-202ENST00000409020 SHROOM4Q9ULL8 1493 aa19.27■□□□□ 0.67
NIF3L1-202ENST00000409020 EIF4G1Q04637 1599 aaKnown RBP19.12■□□□□ 0.65
NIF3L1-202ENST00000409020 CC2D2AQ9P2K1 1620 aa19.11■□□□□ 0.65
NIF3L1-202ENST00000409020 CECR2Q9BXF3 1484 aa19.02■□□□□ 0.64
NIF3L1-202ENST00000409020 SMARCA4P51532 1647 aa18.59■□□□□ 0.57
NIF3L1-202ENST00000409020 ATAD2BQ9ULI0 1458 aa18.56■□□□□ 0.56
NIF3L1-202ENST00000409020 NCAPD3P42695 1498 aa18.55■□□□□ 0.56
NIF3L1-202ENST00000409020 BAZ1AQ9NRL2 1556 aaPredicted RBP18.49■□□□□ 0.55
NIF3L1-202ENST00000409020 SMARCA2P51531 1590 aa18.46■□□□□ 0.54
NIF3L1-202ENST00000409020 MROH2BQ7Z745 1585 aa18.44■□□□□ 0.54
NIF3L1-202ENST00000409020 HMGXB3Q12766 1538 aa18.42■□□□□ 0.54
NIF3L1-202ENST00000409020 PHF23Q9BUL5 403 aaPredicted RBP18.38■□□□□ 0.53
NIF3L1-202ENST00000409020 PEG3Q9GZU2 1588 aa18.38■□□□□ 0.53
NIF3L1-202ENST00000409020 BAZ1BQ9UIG0 1483 aaKnown RBP18.37■□□□□ 0.53
NIF3L1-202ENST00000409020 NESP48681 1621 aa18.28■□□□□ 0.52
NIF3L1-202ENST00000409020 WIZO95785 1651 aa18.23■□□□□ 0.51
NIF3L1-202ENST00000409020 ERCC6Q03468 1493 aa18.21■□□□□ 0.51
NIF3L1-202ENST00000409020 RSF1Q96T23 1441 aaPredicted RBP18.13■□□□□ 0.49
NIF3L1-202ENST00000409020 LAMC3Q9Y6N6 1575 aa18.07■□□□□ 0.48
NIF3L1-202ENST00000409020 CUX2O14529 1486 aa18.07■□□□□ 0.48
NIF3L1-202ENST00000409020 CADPSQ9ULU8 1353 aa18.01■□□□□ 0.47
NIF3L1-202ENST00000409020 THOC2Q8NI27 1593 aaKnown RBP18.01■□□□□ 0.47
NIF3L1-202ENST00000409020 KIF21AQ7Z4S6 1674 aa18■□□□□ 0.47
NIF3L1-202ENST00000409020 TOP2AP11388 1531 aaKnown RBP17.97■□□□□ 0.47
NIF3L1-202ENST00000409020 PDS5BQ9NTI5 1447 aa17.96■□□□□ 0.47
NIF3L1-202ENST00000409020 CFTRP13569 1480 aa17.86■□□□□ 0.45
NIF3L1-202ENST00000409020 DNAJC5Q9H3Z4 198 aa17.86■□□□□ 0.45
NIF3L1-202ENST00000409020 MRC2Q9UBG0 1479 aa17.82■□□□□ 0.44
NIF3L1-202ENST00000409020 FANCD2Q9BXW9 1451 aa17.82■□□□□ 0.44
NIF3L1-202ENST00000409020 CCDC88BA6NC98 1476 aa17.81■□□□□ 0.44
NIF3L1-202ENST00000409020 CEP164Q9UPV0 1460 aa17.79■□□□□ 0.44
NIF3L1-202ENST00000409020 WDR62O43379 1518 aa17.79■□□□□ 0.44
NIF3L1-202ENST00000409020 URB2Q14146 1524 aaKnown RBP17.69■□□□□ 0.42
NIF3L1-202ENST00000409020 PRDM2Q13029 1718 aa17.63■□□□□ 0.41
NIF3L1-202ENST00000409020 TOPBP1Q92547 1522 aa17.51■□□□□ 0.39
NIF3L1-202ENST00000409020 SUPT5HO00267 1087 aaKnown RBP17.51■□□□□ 0.39
NIF3L1-202ENST00000409020 ZNF608Q9ULD9 1512 aaPredicted RBP17.46■□□□□ 0.39
NIF3L1-202ENST00000409020 DNMBPQ6XZF7 1577 aa17.44■□□□□ 0.38
NIF3L1-202ENST00000409020 IFT140Q96RY7 1462 aa17.42■□□□□ 0.38
NIF3L1-202ENST00000409020 SENP3Q9H4L4 574 aaPredicted RBP17.4■□□□□ 0.38
NIF3L1-202ENST00000409020 ABCC8Q09428 1581 aa17.38■□□□□ 0.37
NIF3L1-202ENST00000409020 POLA1P09884 1462 aaPredicted RBP17.36■□□□□ 0.37
NIF3L1-202ENST00000409020 TARBP1Q13395 1621 aaKnown RBP17.34■□□□□ 0.37
NIF3L1-202ENST00000409020 EIF4G3O43432 1585 aaKnown RBP17.33■□□□□ 0.37
NIF3L1-202ENST00000409020 RAD54L2Q9Y4B4 1467 aa17.32■□□□□ 0.36
NIF3L1-202ENST00000409020 AQRO60306 1485 aaKnown RBP eCLIP17.31■□□□□ 0.36
NIF3L1-202ENST00000409020 CUX1P39880 1505 aa17.31■□□□□ 0.36
NIF3L1-202ENST00000409020 OSCARQ8IYS5 282 aa17.29■□□□□ 0.36
NIF3L1-202ENST00000409020 FGD5Q6ZNL6 1462 aa17.28■□□□□ 0.36
NIF3L1-202ENST00000409020 SOGA1O94964 1423 aa17.25■□□□□ 0.35
NIF3L1-202ENST00000409020 TDRD9Q8NDG6 1382 aaKnown RBP17.24■□□□□ 0.35
NIF3L1-202ENST00000409020 TRIM41Q8WV44 630 aa17.22■□□□□ 0.35
NIF3L1-202ENST00000409020 CHD1O14646 1710 aa17.14■□□□□ 0.33
NIF3L1-202ENST00000409020 SNAPC4Q5SXM2 1469 aa17.13■□□□□ 0.33
NIF3L1-202ENST00000409020 FBLN2P98095 1184 aa17.13■□□□□ 0.33
NIF3L1-202ENST00000409020 WDR97A6NE52 1622 aa17.12■□□□□ 0.33
NIF3L1-202ENST00000409020 SYNJ1O43426 1573 aa17.1■□□□□ 0.33
NIF3L1-202ENST00000409020 RIMBP3CA6NJZ7 1639 aa17.09■□□□□ 0.33
NIF3L1-202ENST00000409020 RIMBP3BA6NNM3 1639 aa17.09■□□□□ 0.33
NIF3L1-202ENST00000409020 RIMBP3Q9UFD9 1639 aa17.09■□□□□ 0.33
NIF3L1-202ENST00000409020 WRNQ14191 1432 aaPredicted RBP eCLIP17.07■□□□□ 0.32
NIF3L1-202ENST00000409020 ARHGEF11O15085 1522 aa17.06■□□□□ 0.32
NIF3L1-202ENST00000409020 ABCA10Q8WWZ4 1543 aa17.06■□□□□ 0.32
NIF3L1-202ENST00000409020 GRIN2BQ13224 1484 aa17.06■□□□□ 0.32
NIF3L1-202ENST00000409020 TOP2BQ02880 1626 aa17.05■□□□□ 0.32
NIF3L1-202ENST00000409020 GAPVD1Q14C86 1478 aa17.05■□□□□ 0.32
NIF3L1-202ENST00000409020 ABCA5Q8WWZ7 1642 aa17.04■□□□□ 0.32
NIF3L1-202ENST00000409020 BIVM-ERCC5R4GMW8 1640 aa17.04■□□□□ 0.32
NIF3L1-202ENST00000409020 MAGI1Q96QZ7 1491 aaPredicted RBP17.03■□□□□ 0.32
NIF3L1-202ENST00000409020 PBRM1Q86U86 1689 aa17.02■□□□□ 0.32
NIF3L1-202ENST00000409020 PLPPR3Q6T4P5 718 aa17.01■□□□□ 0.31
NIF3L1-202ENST00000409020 CHMP7Q8WUX9 453 aaPredicted RBP17■□□□□ 0.31
NIF3L1-202ENST00000409020 SYNJ2O15056 1496 aa16.99■□□□□ 0.31
NIF3L1-202ENST00000409020 CLASP1Q7Z460 1538 aa16.97■□□□□ 0.31
NIF3L1-202ENST00000409020 ARAP1Q96P48 1450 aa16.93■□□□□ 0.3
NIF3L1-202ENST00000409020 CYB5RLQ6IPT4 315 aa16.93■□□□□ 0.3
NIF3L1-202ENST00000409020 ADAMTS12P58397 1594 aa16.9■□□□□ 0.3
NIF3L1-202ENST00000409020 GRIN2AQ12879 1464 aa16.86■□□□□ 0.29
NIF3L1-202ENST00000409020 ERICH3Q5RHP9 1530 aa16.83■□□□□ 0.29
NIF3L1-202ENST00000409020 CEP170Q5SW79 1584 aa16.83■□□□□ 0.28
NIF3L1-202ENST00000409020 FHAD1B1AJZ9 1412 aa16.82■□□□□ 0.28
NIF3L1-202ENST00000409020 NUP160Q12769 1436 aa16.8■□□□□ 0.28
NIF3L1-202ENST00000409020 ERCC6L2Q5T890 1561 aa16.79■□□□□ 0.28
NIF3L1-202ENST00000409020 IGF1RP08069 1367 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms