RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 NISCHQ9Y2I1 1504 aa29.86■■■□□ 2.37
SMARCB1-203ENST00000407082 ABCC9O60706 1549 aa27.7■■■□□ 2.02
SMARCB1-203ENST00000407082 CCDC180Q9P1Z9 1646 aa26.94■■□□□ 1.9
SMARCB1-203ENST00000407082 DNAJC5BQ9UF47 199 aa26.5■■□□□ 1.83
SMARCB1-203ENST00000407082 RB1CC1Q8TDY2 1594 aa26■■□□□ 1.75
SMARCB1-203ENST00000407082 DCAF8L2P0C7V8 631 aa25.8■■□□□ 1.72
SMARCB1-203ENST00000407082 PABPN1Q86U42 306 aaKnown RBP eCLIP25.79■■□□□ 1.72
SMARCB1-203ENST00000407082 NACADO15069 1562 aa25.65■■□□□ 1.7
SMARCB1-203ENST00000407082 UNC13AQ9UPW8 1703 aa25.35■■□□□ 1.65
SMARCB1-203ENST00000407082 BICRAQ9NZM4 1560 aa25.22■■□□□ 1.63
SMARCB1-203ENST00000407082 MYO15BQ96JP2 1530 aa25.02■■□□□ 1.6
SMARCB1-203ENST00000407082 CECR2Q9BXF3 1484 aa24.96■■□□□ 1.59
SMARCB1-203ENST00000407082 CC2D2AQ9P2K1 1620 aa24.9■■□□□ 1.58
SMARCB1-203ENST00000407082 SHROOM4Q9ULL8 1493 aa24.73■■□□□ 1.55
SMARCB1-203ENST00000407082 DNAJC5Q9H3Z4 198 aa24.72■■□□□ 1.55
SMARCB1-203ENST00000407082 EIF4G1Q04637 1599 aaKnown RBP24.68■■□□□ 1.54
SMARCB1-203ENST00000407082 SCRIBQ14160 1630 aa24.67■■□□□ 1.54
SMARCB1-203ENST00000407082 ZCCHC6Q5VYS8 1495 aaKnown RBP24.58■■□□□ 1.53
SMARCB1-203ENST00000407082 DCAF1Q9Y4B6 1507 aa24.52■■□□□ 1.52
SMARCB1-203ENST00000407082 CUX2O14529 1486 aa23.97■■□□□ 1.43
SMARCB1-203ENST00000407082 ERCC6Q03468 1493 aa23.97■■□□□ 1.43
SMARCB1-203ENST00000407082 NCAPD3P42695 1498 aa23.71■■□□□ 1.39
SMARCB1-203ENST00000407082 NESP48681 1621 aa23.61■■□□□ 1.37
SMARCB1-203ENST00000407082 ATAD2BQ9ULI0 1458 aa23.59■■□□□ 1.37
SMARCB1-203ENST00000407082 TRIM41Q8WV44 630 aa23.56■■□□□ 1.36
SMARCB1-203ENST00000407082 SMARCA2P51531 1590 aa23.48■■□□□ 1.35
SMARCB1-203ENST00000407082 HMGXB3Q12766 1538 aa23.43■■□□□ 1.34
SMARCB1-203ENST00000407082 SMARCA4P51532 1647 aa23.39■■□□□ 1.33
SMARCB1-203ENST00000407082 BAZ1BQ9UIG0 1483 aaKnown RBP23.37■■□□□ 1.33
SMARCB1-203ENST00000407082 THOC2Q8NI27 1593 aaKnown RBP23.35■■□□□ 1.33
SMARCB1-203ENST00000407082 LAMC3Q9Y6N6 1575 aa23.25■■□□□ 1.31
SMARCB1-203ENST00000407082 PDS5BQ9NTI5 1447 aa23.22■■□□□ 1.31
SMARCB1-203ENST00000407082 KIF21AQ7Z4S6 1674 aa23.21■■□□□ 1.31
SMARCB1-203ENST00000407082 BAZ1AQ9NRL2 1556 aaPredicted RBP23.2■■□□□ 1.3
SMARCB1-203ENST00000407082 PEG3Q9GZU2 1588 aa23.08■■□□□ 1.29
SMARCB1-203ENST00000407082 MROH2BQ7Z745 1585 aa23.04■■□□□ 1.28
SMARCB1-203ENST00000407082 CADPSQ9ULU8 1353 aa23.02■■□□□ 1.28
SMARCB1-203ENST00000407082 MRC2Q9UBG0 1479 aa23.02■■□□□ 1.28
SMARCB1-203ENST00000407082 OSCARQ8IYS5 282 aa22.96■■□□□ 1.27
SMARCB1-203ENST00000407082 WDR62O43379 1518 aa22.92■■□□□ 1.26
SMARCB1-203ENST00000407082 CEP164Q9UPV0 1460 aa22.84■■□□□ 1.25
SMARCB1-203ENST00000407082 FANCD2Q9BXW9 1451 aa22.77■■□□□ 1.24
SMARCB1-203ENST00000407082 WIZO95785 1651 aa22.74■■□□□ 1.23
SMARCB1-203ENST00000407082 RIMBP3CA6NJZ7 1639 aa22.6■■□□□ 1.21
SMARCB1-203ENST00000407082 RIMBP3BA6NNM3 1639 aa22.6■■□□□ 1.21
SMARCB1-203ENST00000407082 RIMBP3Q9UFD9 1639 aa22.6■■□□□ 1.21
SMARCB1-203ENST00000407082 CFTRP13569 1480 aa22.6■■□□□ 1.21
SMARCB1-203ENST00000407082 URB2Q14146 1524 aaKnown RBP22.59■■□□□ 1.21
SMARCB1-203ENST00000407082 RSF1Q96T23 1441 aaPredicted RBP22.53■■□□□ 1.2
SMARCB1-203ENST00000407082 CYB5RLQ6IPT4 315 aa22.52■■□□□ 1.2
SMARCB1-203ENST00000407082 TRHP20396 242 aaPredicted RBP22.51■■□□□ 1.19
SMARCB1-203ENST00000407082 ARHGEF11O15085 1522 aa22.47■■□□□ 1.19
SMARCB1-203ENST00000407082 ZNF608Q9ULD9 1512 aaPredicted RBP22.45■■□□□ 1.18
SMARCB1-203ENST00000407082 IFT140Q96RY7 1462 aa22.39■■□□□ 1.17
SMARCB1-203ENST00000407082 TOP2AP11388 1531 aaKnown RBP22.36■■□□□ 1.17
SMARCB1-203ENST00000407082 FBLN2P98095 1184 aa22.34■■□□□ 1.17
SMARCB1-203ENST00000407082 SUPT5HO00267 1087 aaKnown RBP22.28■■□□□ 1.16
SMARCB1-203ENST00000407082 AEBP2Q6ZN18 517 aaPredicted RBP22.27■■□□□ 1.16
SMARCB1-203ENST00000407082 TOPBP1Q92547 1522 aa22.26■■□□□ 1.15
SMARCB1-203ENST00000407082 PRDM2Q13029 1718 aa22.23■■□□□ 1.15
SMARCB1-203ENST00000407082 EIF4G3O43432 1585 aaKnown RBP22.22■■□□□ 1.15
SMARCB1-203ENST00000407082 AQRO60306 1485 aaKnown RBP eCLIP22.22■■□□□ 1.15
SMARCB1-203ENST00000407082 ARAP1Q96P48 1450 aa22.21■■□□□ 1.15
SMARCB1-203ENST00000407082 CCDC88BA6NC98 1476 aa22.19■■□□□ 1.14
SMARCB1-203ENST00000407082 CHD1O14646 1710 aa22.17■■□□□ 1.14
SMARCB1-203ENST00000407082 ABCC8Q09428 1581 aa22.15■■□□□ 1.14
SMARCB1-203ENST00000407082 DNMBPQ6XZF7 1577 aa22.09■■□□□ 1.13
SMARCB1-203ENST00000407082 TARBP1Q13395 1621 aaKnown RBP22.04■■□□□ 1.12
SMARCB1-203ENST00000407082 TDRD9Q8NDG6 1382 aaKnown RBP22.03■■□□□ 1.12
SMARCB1-203ENST00000407082 CHMP7Q8WUX9 453 aaPredicted RBP22.01■■□□□ 1.11
SMARCB1-203ENST00000407082 RAD54L2Q9Y4B4 1467 aa21.99■■□□□ 1.11
SMARCB1-203ENST00000407082 POLA1P09884 1462 aaPredicted RBP21.98■■□□□ 1.11
SMARCB1-203ENST00000407082 SOGA1O94964 1423 aa21.96■■□□□ 1.11
SMARCB1-203ENST00000407082 SNAPC4Q5SXM2 1469 aa21.92■■□□□ 1.1
SMARCB1-203ENST00000407082 CLASP1Q7Z460 1538 aa21.86■■□□□ 1.09
SMARCB1-203ENST00000407082 SYNJ1O43426 1573 aa21.86■■□□□ 1.09
SMARCB1-203ENST00000407082 FGD5Q6ZNL6 1462 aa21.8■■□□□ 1.08
SMARCB1-203ENST00000407082 MAGI1Q96QZ7 1491 aaPredicted RBP21.78■■□□□ 1.08
SMARCB1-203ENST00000407082 GRIN2BQ13224 1484 aa21.77■■□□□ 1.08
SMARCB1-203ENST00000407082 GAPVD1Q14C86 1478 aa21.77■■□□□ 1.08
SMARCB1-203ENST00000407082 SYNJ2O15056 1496 aa21.75■■□□□ 1.07
SMARCB1-203ENST00000407082 WDR97A6NE52 1622 aa21.7■■□□□ 1.06
SMARCB1-203ENST00000407082 CUX1P39880 1505 aa21.66■■□□□ 1.06
SMARCB1-203ENST00000407082 PBRM1Q86U86 1689 aa21.59■■□□□ 1.05
SMARCB1-203ENST00000407082 ERCC6L2Q5T890 1561 aa21.57■■□□□ 1.04
SMARCB1-203ENST00000407082 GRIN2AQ12879 1464 aa21.47■■□□□ 1.03
SMARCB1-203ENST00000407082 ABCA10Q8WWZ4 1543 aa21.46■■□□□ 1.03
SMARCB1-203ENST00000407082 CEP170Q5SW79 1584 aa21.46■■□□□ 1.03
SMARCB1-203ENST00000407082 ABCA5Q8WWZ7 1642 aa21.44■■□□□ 1.02
SMARCB1-203ENST00000407082 FAM69CQ0P6D2 419 aa21.41■■□□□ 1.02
SMARCB1-203ENST00000407082 CHIC1Q5VXU3 224 aa21.4■■□□□ 1.02
SMARCB1-203ENST00000407082 NUP160Q12769 1436 aa21.38■■□□□ 1.01
SMARCB1-203ENST00000407082 NPM1P06748 294 aaKnown RBP eCLIP21.37■■□□□ 1.01
SMARCB1-203ENST00000407082 KIF13AQ9H1H9 1805 aa21.36■■□□□ 1.01
SMARCB1-203ENST00000407082 WRNQ14191 1432 aaPredicted RBP eCLIP21.35■■□□□ 1.01
SMARCB1-203ENST00000407082 ADAMTS12P58397 1594 aa21.35■■□□□ 1.01
SMARCB1-203ENST00000407082 PRG4Q92954 1404 aaPredicted RBP21.34■■□□□ 1.01
SMARCB1-203ENST00000407082 FHAD1B1AJZ9 1412 aa21.33■■□□□ 1.01
SMARCB1-203ENST00000407082 JPH4Q96JJ6 628 aa21.32■■□□□ 1
SMARCB1-203ENST00000407082 SHROOM2Q13796 1616 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms