RNA–Protein interactions for RNA: ENST00000406072.5

HDAC9-203, Transcript of histone deacetylase 9, humanhuman

TSL 5 BASIC

Gene HDAC9, Length 4,102 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-203ENST00000406072 NISCHQ9Y2I1 1504 aa12.54□□□□□ -0.4
HDAC9-203ENST00000406072 CCDC180Q9P1Z9 1646 aa11.26□□□□□ -0.61
HDAC9-203ENST00000406072 DCAF1Q9Y4B6 1507 aa10.66□□□□□ -0.7
HDAC9-203ENST00000406072 MYO15BQ96JP2 1530 aa10.61□□□□□ -0.71
HDAC9-203ENST00000406072 ZCCHC6Q5VYS8 1495 aaKnown RBP10.6□□□□□ -0.71
HDAC9-203ENST00000406072 NACADO15069 1562 aa10.36□□□□□ -0.75
HDAC9-203ENST00000406072 RB1CC1Q8TDY2 1594 aa10.21□□□□□ -0.77
HDAC9-203ENST00000406072 SHROOM4Q9ULL8 1493 aa10.1□□□□□ -0.79
HDAC9-203ENST00000406072 ABCC9O60706 1549 aa10.09□□□□□ -0.79
HDAC9-203ENST00000406072 UNC13AQ9UPW8 1703 aa10.06□□□□□ -0.8
HDAC9-203ENST00000406072 BICRAQ9NZM4 1560 aa9.9□□□□□ -0.82
HDAC9-203ENST00000406072 SCRIBQ14160 1630 aa9.9□□□□□ -0.82
HDAC9-203ENST00000406072 PELP1Q8IZL8 1130 aaKnown RBP9.79□□□□□ -0.84
HDAC9-203ENST00000406072 PEG3Q9GZU2 1588 aa9.77□□□□□ -0.84
HDAC9-203ENST00000406072 BAZ1AQ9NRL2 1556 aaPredicted RBP9.72□□□□□ -0.85
HDAC9-203ENST00000406072 SMARCA4P51532 1647 aa9.69□□□□□ -0.86
HDAC9-203ENST00000406072 MYT1Q01538 1121 aa9.63□□□□□ -0.87
HDAC9-203ENST00000406072 SMARCA2P51531 1590 aa9.62□□□□□ -0.87
HDAC9-203ENST00000406072 RSF1Q96T23 1441 aaPredicted RBP9.59□□□□□ -0.87
HDAC9-203ENST00000406072 HMGXB3Q12766 1538 aa9.57□□□□□ -0.88
HDAC9-203ENST00000406072 DCAF8L2P0C7V8 631 aa9.57□□□□□ -0.88
HDAC9-203ENST00000406072 MROH2BQ7Z745 1585 aa9.57□□□□□ -0.88
HDAC9-203ENST00000406072 TOP2AP11388 1531 aaKnown RBP9.56□□□□□ -0.88
HDAC9-203ENST00000406072 CECR2Q9BXF3 1484 aa9.54□□□□□ -0.88
HDAC9-203ENST00000406072 EIF4G1Q04637 1599 aaKnown RBP9.54□□□□□ -0.88
HDAC9-203ENST00000406072 WIZO95785 1651 aa9.49□□□□□ -0.89
HDAC9-203ENST00000406072 NCAPD3P42695 1498 aa9.48□□□□□ -0.89
HDAC9-203ENST00000406072 ATAD2BQ9ULI0 1458 aa9.46□□□□□ -0.9
HDAC9-203ENST00000406072 PRDM2Q13029 1718 aa9.44□□□□□ -0.9
HDAC9-203ENST00000406072 PCGF6Q9BYE7 350 aa9.4□□□□□ -0.91
HDAC9-203ENST00000406072 CC2D2AQ9P2K1 1620 aa9.38□□□□□ -0.91
HDAC9-203ENST00000406072 BAZ1BQ9UIG0 1483 aaKnown RBP9.34□□□□□ -0.91
HDAC9-203ENST00000406072 SUPT5HO00267 1087 aaKnown RBP9.3□□□□□ -0.92
HDAC9-203ENST00000406072 PABPN1Q86U42 306 aaKnown RBP eCLIP9.29□□□□□ -0.92
HDAC9-203ENST00000406072 HRCP23327 699 aa9.29□□□□□ -0.92
HDAC9-203ENST00000406072 CCDC88BA6NC98 1476 aa9.28□□□□□ -0.92
HDAC9-203ENST00000406072 LAMC3Q9Y6N6 1575 aa9.22□□□□□ -0.93
HDAC9-203ENST00000406072 CFTRP13569 1480 aa9.22□□□□□ -0.93
HDAC9-203ENST00000406072 CENPBP07199 599 aaPredicted RBP9.21□□□□□ -0.94
HDAC9-203ENST00000406072 BIVM-ERCC5R4GMW8 1640 aa9.2□□□□□ -0.94
HDAC9-203ENST00000406072 PPARGC1BQ86YN6 1023 aaKnown RBP9.16□□□□□ -0.94
HDAC9-203ENST00000406072 SLC24A1O60721 1099 aa9.14□□□□□ -0.95
HDAC9-203ENST00000406072 TOP2BQ02880 1626 aa9.12□□□□□ -0.95
HDAC9-203ENST00000406072 WDR97A6NE52 1622 aa9.1□□□□□ -0.95
HDAC9-203ENST00000406072 CADPSQ9ULU8 1353 aa9.09□□□□□ -0.95
HDAC9-203ENST00000406072 ZEB1P37275 1124 aaPredicted RBP9.08□□□□□ -0.96
HDAC9-203ENST00000406072 ABCC8Q09428 1581 aa9.07□□□□□ -0.96
HDAC9-203ENST00000406072 DNMBPQ6XZF7 1577 aa9.04□□□□□ -0.96
HDAC9-203ENST00000406072 SYNJ1O43426 1573 aa9.03□□□□□ -0.96
HDAC9-203ENST00000406072 EHMT2Q96KQ7 1210 aa9.01□□□□□ -0.97
HDAC9-203ENST00000406072 EEA1Q15075 1411 aa9.01□□□□□ -0.97
HDAC9-203ENST00000406072 KIF21AQ7Z4S6 1674 aa9.01□□□□□ -0.97
HDAC9-203ENST00000406072 WDR62O43379 1518 aa9□□□□□ -0.97
HDAC9-203ENST00000406072 CUX1P39880 1505 aa9□□□□□ -0.97
HDAC9-203ENST00000406072 THOC2Q8NI27 1593 aaKnown RBP8.99□□□□□ -0.97
HDAC9-203ENST00000406072 WRNQ14191 1432 aaPredicted RBP eCLIP8.98□□□□□ -0.97
HDAC9-203ENST00000406072 FANCD2Q9BXW9 1451 aa8.97□□□□□ -0.97
HDAC9-203ENST00000406072 PDS5BQ9NTI5 1447 aa8.97□□□□□ -0.97
HDAC9-203ENST00000406072 ERICH6Q7L0X2 663 aa8.97□□□□□ -0.97
HDAC9-203ENST00000406072 YTHDC1Q96MU7 727 aaKnown RBP8.97□□□□□ -0.97
HDAC9-203ENST00000406072 CHIC1Q5VXU3 224 aa8.96□□□□□ -0.98
HDAC9-203ENST00000406072 CEP164Q9UPV0 1460 aa8.95□□□□□ -0.98
HDAC9-203ENST00000406072 KIF21BO75037 1637 aa8.94□□□□□ -0.98
HDAC9-203ENST00000406072 MRC2Q9UBG0 1479 aa8.92□□□□□ -0.98
HDAC9-203ENST00000406072 TOPBP1Q92547 1522 aa8.92□□□□□ -0.98
HDAC9-203ENST00000406072 TARBP1Q13395 1621 aaKnown RBP8.92□□□□□ -0.98
HDAC9-203ENST00000406072 ABCA5Q8WWZ7 1642 aa8.92□□□□□ -0.98
HDAC9-203ENST00000406072 ABCA10Q8WWZ4 1543 aa8.91□□□□□ -0.98
HDAC9-203ENST00000406072 URB2Q14146 1524 aaKnown RBP8.9□□□□□ -0.98
HDAC9-203ENST00000406072 ERICH3Q5RHP9 1530 aa8.9□□□□□ -0.98
HDAC9-203ENST00000406072 GTF3C3Q9Y5Q9 886 aa8.89□□□□□ -0.99
HDAC9-203ENST00000406072 CUL7Q14999 1698 aa8.89□□□□□ -0.99
HDAC9-203ENST00000406072 TTBK1Q5TCY1 1321 aaPredicted RBP8.88□□□□□ -0.99
HDAC9-203ENST00000406072 NESP48681 1621 aa8.88□□□□□ -0.99
HDAC9-203ENST00000406072 CCER1Q8TC90 406 aaPredicted RBP8.88□□□□□ -0.99
HDAC9-203ENST00000406072 FGD5Q6ZNL6 1462 aa8.84□□□□□ -0.99
HDAC9-203ENST00000406072 TRIM26Q12899 539 aaPredicted RBP8.84□□□□□ -0.99
HDAC9-203ENST00000406072 POLA1P09884 1462 aaPredicted RBP8.84□□□□□ -0.99
HDAC9-203ENST00000406072 DNAJC5BQ9UF47 199 aa8.84□□□□□ -0.99
HDAC9-203ENST00000406072 PBRM1Q86U86 1689 aa8.83□□□□□ -1
HDAC9-203ENST00000406072 IFT140Q96RY7 1462 aa8.82□□□□□ -1
HDAC9-203ENST00000406072 SCAF1Q9H7N4 1312 aaKnown RBP8.82□□□□□ -1
HDAC9-203ENST00000406072 PRXQ9BXM0 1461 aa8.81□□□□□ -1
HDAC9-203ENST00000406072 CUX2O14529 1486 aa8.79□□□□□ -1
HDAC9-203ENST00000406072 KIF27Q86VH2 1401 aa8.78□□□□□ -1
HDAC9-203ENST00000406072 ACIN1Q9UKV3 1341 aaKnown RBP8.78□□□□□ -1
HDAC9-203ENST00000406072 ADAMTS12P58397 1594 aa8.76□□□□□ -1.01
HDAC9-203ENST00000406072 CTTNBP2Q8WZ74 1663 aa8.76□□□□□ -1.01
HDAC9-203ENST00000406072 TRIM41Q8WV44 630 aa8.75□□□□□ -1.01
HDAC9-203ENST00000406072 GOLGA3Q08378 1498 aa8.74□□□□□ -1.01
HDAC9-203ENST00000406072 FAM9AQ8IZU1 332 aaPredicted RBP8.74□□□□□ -1.01
HDAC9-203ENST00000406072 EIF4G3O43432 1585 aaKnown RBP8.74□□□□□ -1.01
HDAC9-203ENST00000406072 SOGA1O94964 1423 aa8.73□□□□□ -1.01
HDAC9-203ENST00000406072 DIEXFQ68CQ4 756 aaKnown RBP8.71□□□□□ -1.01
HDAC9-203ENST00000406072 MAGI1Q96QZ7 1491 aaPredicted RBP8.71□□□□□ -1.02
HDAC9-203ENST00000406072 TNIKQ9UKE5 1360 aa8.7□□□□□ -1.02
HDAC9-203ENST00000406072 NEFLP07196 543 aa8.7□□□□□ -1.02
HDAC9-203ENST00000406072 RUSC2Q8N2Y8 1516 aa8.69□□□□□ -1.02
HDAC9-203ENST00000406072 GRIN2BQ13224 1484 aa8.69□□□□□ -1.02
HDAC9-203ENST00000406072 ERCC6Q03468 1493 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 127 ms