RNA–Protein interactions for RNA: ENST00000401605.5

CLIP4-202, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

TSL 2 BASIC

Gene CLIP4, Length 2,322 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-202ENST00000401605 NISCHQ9Y2I1 1504 aa13.71□□□□□ -0.21
CLIP4-202ENST00000401605 CHIC1Q5VXU3 224 aa13.65□□□□□ -0.22
CLIP4-202ENST00000401605 AEBP2Q6ZN18 517 aaPredicted RBP13.08□□□□□ -0.31
CLIP4-202ENST00000401605 PHF23Q9BUL5 403 aaPredicted RBP12.28□□□□□ -0.44
CLIP4-202ENST00000401605 ABCC9O60706 1549 aa12.22□□□□□ -0.45
CLIP4-202ENST00000401605 CCDC180Q9P1Z9 1646 aa12.2□□□□□ -0.46
CLIP4-202ENST00000401605 EHMT2Q96KQ7 1210 aa12.11□□□□□ -0.47
CLIP4-202ENST00000401605 SLC24A1O60721 1099 aa12.04□□□□□ -0.48
CLIP4-202ENST00000401605 RB1CC1Q8TDY2 1594 aa11.64□□□□□ -0.55
CLIP4-202ENST00000401605 DCAF8L2P0C7V8 631 aa11.6□□□□□ -0.55
CLIP4-202ENST00000401605 NACADO15069 1562 aa11.59□□□□□ -0.55
CLIP4-202ENST00000401605 PLPPR3Q6T4P5 718 aa11.51□□□□□ -0.57
CLIP4-202ENST00000401605 MYO15BQ96JP2 1530 aa11.48□□□□□ -0.57
CLIP4-202ENST00000401605 KCNA4P22459 653 aa11.48□□□□□ -0.57
CLIP4-202ENST00000401605 DNAJC5BQ9UF47 199 aa11.44□□□□□ -0.58
CLIP4-202ENST00000401605 PABPN1Q86U42 306 aaKnown RBP eCLIP11.43□□□□□ -0.58
CLIP4-202ENST00000401605 CSRNP3Q8WYN3 585 aa11.4□□□□□ -0.58
CLIP4-202ENST00000401605 ZCCHC6Q5VYS8 1495 aaKnown RBP11.38□□□□□ -0.59
CLIP4-202ENST00000401605 DCAF1Q9Y4B6 1507 aa11.34□□□□□ -0.59
CLIP4-202ENST00000401605 RTN4Q9NQC3 1192 aaKnown RBP11.33□□□□□ -0.6
CLIP4-202ENST00000401605 BICRAQ9NZM4 1560 aa11.27□□□□□ -0.61
CLIP4-202ENST00000401605 UNC13AQ9UPW8 1703 aa11.22□□□□□ -0.61
CLIP4-202ENST00000401605 SHROOM4Q9ULL8 1493 aa11.21□□□□□ -0.62
CLIP4-202ENST00000401605 MYT1Q01538 1121 aa11.15□□□□□ -0.62
CLIP4-202ENST00000401605 SCRIBQ14160 1630 aa11.14□□□□□ -0.63
CLIP4-202ENST00000401605 PELP1Q8IZL8 1130 aaKnown RBP11.1□□□□□ -0.63
CLIP4-202ENST00000401605 AMER1Q5JTC6 1135 aaPredicted RBP11.07□□□□□ -0.64
CLIP4-202ENST00000401605 CECR2Q9BXF3 1484 aa11.03□□□□□ -0.64
CLIP4-202ENST00000401605 EIF4G1Q04637 1599 aaKnown RBP11.02□□□□□ -0.65
CLIP4-202ENST00000401605 ADRA2BP18089 450 aa11.01□□□□□ -0.65
CLIP4-202ENST00000401605 SLC4A1APQ9BWU0 796 aaKnown RBP11.01□□□□□ -0.65
CLIP4-202ENST00000401605 CC2D2AQ9P2K1 1620 aa11□□□□□ -0.65
CLIP4-202ENST00000401605 TTBK1Q5TCY1 1321 aaPredicted RBP10.91□□□□□ -0.66
CLIP4-202ENST00000401605 NCBP3Q53F19 620 aaKnown RBP10.75□□□□□ -0.69
CLIP4-202ENST00000401605 NCAPD3P42695 1498 aa10.74□□□□□ -0.69
CLIP4-202ENST00000401605 ATAD2BQ9ULI0 1458 aa10.7□□□□□ -0.7
CLIP4-202ENST00000401605 SENP3Q9H4L4 574 aaPredicted RBP10.68□□□□□ -0.7
CLIP4-202ENST00000401605 ZBTB22O15209 634 aa10.66□□□□□ -0.7
CLIP4-202ENST00000401605 SMARCA2P51531 1590 aa10.65□□□□□ -0.7
CLIP4-202ENST00000401605 SMARCA4P51532 1647 aa10.64□□□□□ -0.71
CLIP4-202ENST00000401605 BAZ1AQ9NRL2 1556 aaPredicted RBP10.64□□□□□ -0.71
CLIP4-202ENST00000401605 HMGXB3Q12766 1538 aa10.63□□□□□ -0.71
CLIP4-202ENST00000401605 PRKCSHP14314 528 aaPredicted RBP10.6□□□□□ -0.71
CLIP4-202ENST00000401605 BAZ1BQ9UIG0 1483 aaKnown RBP10.59□□□□□ -0.71
CLIP4-202ENST00000401605 ERCC6Q03468 1493 aa10.58□□□□□ -0.72
CLIP4-202ENST00000401605 PEG3Q9GZU2 1588 aa10.56□□□□□ -0.72
CLIP4-202ENST00000401605 MROH2BQ7Z745 1585 aa10.55□□□□□ -0.72
CLIP4-202ENST00000401605 CUX2O14529 1486 aa10.54□□□□□ -0.72
CLIP4-202ENST00000401605 PPP6R1Q9UPN7 881 aa10.53□□□□□ -0.72
CLIP4-202ENST00000401605 NESP48681 1621 aa10.5□□□□□ -0.73
CLIP4-202ENST00000401605 DNAJC5Q9H3Z4 198 aa10.5□□□□□ -0.73
CLIP4-202ENST00000401605 ERICH6Q7L0X2 663 aa10.46□□□□□ -0.74
CLIP4-202ENST00000401605 PDS5BQ9NTI5 1447 aa10.44□□□□□ -0.74
CLIP4-202ENST00000401605 DAXXQ9UER7 740 aaPredicted RBP10.44□□□□□ -0.74
CLIP4-202ENST00000401605 LAMC3Q9Y6N6 1575 aa10.44□□□□□ -0.74
CLIP4-202ENST00000401605 CADPSQ9ULU8 1353 aa10.43□□□□□ -0.74
CLIP4-202ENST00000401605 RSF1Q96T23 1441 aaPredicted RBP10.39□□□□□ -0.75
CLIP4-202ENST00000401605 APLP2Q06481 763 aa10.38□□□□□ -0.75
CLIP4-202ENST00000401605 WIZO95785 1651 aa10.37□□□□□ -0.75
CLIP4-202ENST00000401605 PPP4R3CPQ6ZMV5 832 aa10.35□□□□□ -0.75
CLIP4-202ENST00000401605 THOC2Q8NI27 1593 aaKnown RBP10.35□□□□□ -0.75
CLIP4-202ENST00000401605 NPM3O75607 178 aaKnown RBP10.34□□□□□ -0.75
CLIP4-202ENST00000401605 MRC2Q9UBG0 1479 aa10.31□□□□□ -0.76
CLIP4-202ENST00000401605 TAOK2Q9UL54 1235 aa10.31□□□□□ -0.76
CLIP4-202ENST00000401605 CFTRP13569 1480 aa10.3□□□□□ -0.76
CLIP4-202ENST00000401605 TOP2AP11388 1531 aaKnown RBP10.3□□□□□ -0.76
CLIP4-202ENST00000401605 FANCD2Q9BXW9 1451 aa10.28□□□□□ -0.76
CLIP4-202ENST00000401605 CEP164Q9UPV0 1460 aa10.28□□□□□ -0.76
CLIP4-202ENST00000401605 KIF21AQ7Z4S6 1674 aa10.27□□□□□ -0.76
CLIP4-202ENST00000401605 WDR62O43379 1518 aa10.26□□□□□ -0.77
CLIP4-202ENST00000401605 PLCB2Q00722 1185 aa10.23□□□□□ -0.77
CLIP4-202ENST00000401605 BCANQ96GW7 911 aa10.22□□□□□ -0.77
CLIP4-202ENST00000401605 FKBP8Q14318 412 aa10.21□□□□□ -0.77
CLIP4-202ENST00000401605 TIMELESSQ9UNS1 1208 aa10.21□□□□□ -0.77
CLIP4-202ENST00000401605 CCDC88BA6NC98 1476 aa10.2□□□□□ -0.78
CLIP4-202ENST00000401605 URB2Q14146 1524 aaKnown RBP10.17□□□□□ -0.78
CLIP4-202ENST00000401605 TPRNQ4KMQ1 711 aa10.16□□□□□ -0.78
CLIP4-202ENST00000401605 HAP1P54257 671 aaPredicted RBP10.12□□□□□ -0.79
CLIP4-202ENST00000401605 OSCARQ8IYS5 282 aa10.11□□□□□ -0.79
CLIP4-202ENST00000401605 FOXD4L1Q9NU39 408 aa10.09□□□□□ -0.79
CLIP4-202ENST00000401605 IFT140Q96RY7 1462 aa10.09□□□□□ -0.79
CLIP4-202ENST00000401605 TULP1O00294 542 aaPredicted RBP10.08□□□□□ -0.8
CLIP4-202ENST00000401605 ARXQ96QS3 562 aa10.08□□□□□ -0.8
CLIP4-202ENST00000401605 ABCC8Q09428 1581 aa10.08□□□□□ -0.8
CLIP4-202ENST00000401605 TOPBP1Q92547 1522 aa10.07□□□□□ -0.8
CLIP4-202ENST00000401605 TRIM41Q8WV44 630 aa10.04□□□□□ -0.8
CLIP4-202ENST00000401605 ZNF608Q9ULD9 1512 aaPredicted RBP10.04□□□□□ -0.8
CLIP4-202ENST00000401605 DNMBPQ6XZF7 1577 aa10.02□□□□□ -0.8
CLIP4-202ENST00000401605 PRDM2Q13029 1718 aa10.02□□□□□ -0.81
CLIP4-202ENST00000401605 SUPT5HO00267 1087 aaKnown RBP9.99□□□□□ -0.81
CLIP4-202ENST00000401605 POLA1P09884 1462 aaPredicted RBP9.98□□□□□ -0.81
CLIP4-202ENST00000401605 AQRO60306 1485 aaKnown RBP eCLIP9.97□□□□□ -0.81
CLIP4-202ENST00000401605 SOGA1O94964 1423 aa9.96□□□□□ -0.81
CLIP4-202ENST00000401605 FOXD1Q16676 465 aa9.95□□□□□ -0.82
CLIP4-202ENST00000401605 RAD54L2Q9Y4B4 1467 aa9.94□□□□□ -0.82
CLIP4-202ENST00000401605 EIF4G3O43432 1585 aaKnown RBP9.94□□□□□ -0.82
CLIP4-202ENST00000401605 TDRD9Q8NDG6 1382 aaKnown RBP9.94□□□□□ -0.82
CLIP4-202ENST00000401605 TARBP1Q13395 1621 aaKnown RBP9.94□□□□□ -0.82
CLIP4-202ENST00000401605 FBLN2P98095 1184 aa9.93□□□□□ -0.82
CLIP4-202ENST00000401605 FGD5Q6ZNL6 1462 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms