RNA–Protein interactions for RNA: ENST00000399438.7

TRAPPC13-202, Transcript of trafficking protein particle complex 13, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TRAPPC13, Length 3,221 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC13-202ENST00000399438 SLC24A1O60721 1099 aa13.16□□□□□ -0.3
TRAPPC13-202ENST00000399438 CHIC1Q5VXU3 224 aa13.07□□□□□ -0.32
TRAPPC13-202ENST00000399438 NISCHQ9Y2I1 1504 aa12.44□□□□□ -0.42
TRAPPC13-202ENST00000399438 EHMT2Q96KQ7 1210 aa12.35□□□□□ -0.43
TRAPPC13-202ENST00000399438 AEBP2Q6ZN18 517 aaPredicted RBP12.21□□□□□ -0.45
TRAPPC13-202ENST00000399438 PLPPR3Q6T4P5 718 aa12.03□□□□□ -0.48
TRAPPC13-202ENST00000399438 RTN4Q9NQC3 1192 aaKnown RBP11.94□□□□□ -0.5
TRAPPC13-202ENST00000399438 DAXXQ9UER7 740 aaPredicted RBP11.83□□□□□ -0.52
TRAPPC13-202ENST00000399438 PHF23Q9BUL5 403 aaPredicted RBP11.81□□□□□ -0.52
TRAPPC13-202ENST00000399438 NCBP3Q53F19 620 aaKnown RBP11.78□□□□□ -0.52
TRAPPC13-202ENST00000399438 AMER1Q5JTC6 1135 aaPredicted RBP11.71□□□□□ -0.54
TRAPPC13-202ENST00000399438 CSRNP3Q8WYN3 585 aa11.64□□□□□ -0.55
TRAPPC13-202ENST00000399438 KCNA4P22459 653 aa11.63□□□□□ -0.55
TRAPPC13-202ENST00000399438 PRKCSHP14314 528 aaPredicted RBP11.36□□□□□ -0.59
TRAPPC13-202ENST00000399438 ARXQ96QS3 562 aa11.24□□□□□ -0.61
TRAPPC13-202ENST00000399438 TIMELESSQ9UNS1 1208 aa11.14□□□□□ -0.63
TRAPPC13-202ENST00000399438 APLP2Q06481 763 aa11.1□□□□□ -0.63
TRAPPC13-202ENST00000399438 TAOK2Q9UL54 1235 aa11.05□□□□□ -0.64
TRAPPC13-202ENST00000399438 SLC4A1APQ9BWU0 796 aaKnown RBP11.02□□□□□ -0.65
TRAPPC13-202ENST00000399438 TTBK1Q5TCY1 1321 aaPredicted RBP11□□□□□ -0.65
TRAPPC13-202ENST00000399438 CCDC180Q9P1Z9 1646 aa10.99□□□□□ -0.65
TRAPPC13-202ENST00000399438 TULP1O00294 542 aaPredicted RBP10.93□□□□□ -0.66
TRAPPC13-202ENST00000399438 BCANQ96GW7 911 aa10.91□□□□□ -0.66
TRAPPC13-202ENST00000399438 PELP1Q8IZL8 1130 aaKnown RBP10.9□□□□□ -0.67
TRAPPC13-202ENST00000399438 HOMEZQ8IX15 550 aa10.84□□□□□ -0.67
TRAPPC13-202ENST00000399438 TPRNQ4KMQ1 711 aa10.82□□□□□ -0.68
TRAPPC13-202ENST00000399438 ERICH6Q7L0X2 663 aa10.79□□□□□ -0.68
TRAPPC13-202ENST00000399438 PLCB2Q00722 1185 aa10.78□□□□□ -0.68
TRAPPC13-202ENST00000399438 MYT1Q01538 1121 aa10.78□□□□□ -0.68
TRAPPC13-202ENST00000399438 RANGAP1P46060 587 aaPredicted RBP10.74□□□□□ -0.69
TRAPPC13-202ENST00000399438 ZBTB22O15209 634 aa10.68□□□□□ -0.7
TRAPPC13-202ENST00000399438 GTF3C3Q9Y5Q9 886 aa10.65□□□□□ -0.7
TRAPPC13-202ENST00000399438 SHROOM4Q9ULL8 1493 aa10.65□□□□□ -0.7
TRAPPC13-202ENST00000399438 KLHL34Q8N239 644 aa10.62□□□□□ -0.71
TRAPPC13-202ENST00000399438 ADRA2BP18089 450 aa10.61□□□□□ -0.71
TRAPPC13-202ENST00000399438 HAP1P54257 671 aaPredicted RBP10.59□□□□□ -0.71
TRAPPC13-202ENST00000399438 PODXL2Q9NZ53 605 aa10.57□□□□□ -0.72
TRAPPC13-202ENST00000399438 DCAF8L2P0C7V8 631 aa10.48□□□□□ -0.73
TRAPPC13-202ENST00000399438 ABCC9O60706 1549 aa10.46□□□□□ -0.73
TRAPPC13-202ENST00000399438 VSIG10Q8N0Z9 540 aa10.44□□□□□ -0.74
TRAPPC13-202ENST00000399438 TMEM132AQ24JP5 1023 aa10.43□□□□□ -0.74
TRAPPC13-202ENST00000399438 ZCCHC6Q5VYS8 1495 aaKnown RBP10.43□□□□□ -0.74
TRAPPC13-202ENST00000399438 SUPT5HO00267 1087 aaKnown RBP10.41□□□□□ -0.74
TRAPPC13-202ENST00000399438 NPM2Q86SE8 214 aaKnown RBP10.34□□□□□ -0.75
TRAPPC13-202ENST00000399438 FKBP8Q14318 412 aa10.33□□□□□ -0.76
TRAPPC13-202ENST00000399438 KDM2AQ9Y2K7 1162 aa10.33□□□□□ -0.76
TRAPPC13-202ENST00000399438 DCAF1Q9Y4B6 1507 aa10.33□□□□□ -0.76
TRAPPC13-202ENST00000399438 EIF5BO60841 1220 aaKnown RBP10.3□□□□□ -0.76
TRAPPC13-202ENST00000399438 MYO15BQ96JP2 1530 aa10.28□□□□□ -0.76
TRAPPC13-202ENST00000399438 NPM3O75607 178 aaKnown RBP10.28□□□□□ -0.76
TRAPPC13-202ENST00000399438 C14orf37Q86TY3 774 aa10.28□□□□□ -0.76
TRAPPC13-202ENST00000399438 NACADO15069 1562 aa10.25□□□□□ -0.77
TRAPPC13-202ENST00000399438 FBXO3Q9UK99 471 aa10.23□□□□□ -0.77
TRAPPC13-202ENST00000399438 FBLN2P98095 1184 aa10.2□□□□□ -0.78
TRAPPC13-202ENST00000399438 RB1CC1Q8TDY2 1594 aa10.2□□□□□ -0.78
TRAPPC13-202ENST00000399438 TRIM26Q12899 539 aaPredicted RBP10.18□□□□□ -0.78
TRAPPC13-202ENST00000399438 HRCP23327 699 aa10.09□□□□□ -0.79
TRAPPC13-202ENST00000399438 UBTFP17480 764 aaKnown RBP10.06□□□□□ -0.8
TRAPPC13-202ENST00000399438 PPP4R3CPQ6ZMV5 832 aa10.04□□□□□ -0.8
TRAPPC13-202ENST00000399438 SCRIBQ14160 1630 aa10.01□□□□□ -0.81
TRAPPC13-202ENST00000399438 FOXD4L1Q9NU39 408 aa10.01□□□□□ -0.81
TRAPPC13-202ENST00000399438 LOC105371045A0A1W2PR82 267 aa10□□□□□ -0.81
TRAPPC13-202ENST00000399438 UNC13AQ9UPW8 1703 aa10□□□□□ -0.81
TRAPPC13-202ENST00000399438 PPP6R1Q9UPN7 881 aa9.99□□□□□ -0.81
TRAPPC13-202ENST00000399438 PLEKHG5O94827 1062 aa9.96□□□□□ -0.82
TRAPPC13-202ENST00000399438 BICRAQ9NZM4 1560 aa9.91□□□□□ -0.82
TRAPPC13-202ENST00000399438 SENP3Q9H4L4 574 aaPredicted RBP9.88□□□□□ -0.83
TRAPPC13-202ENST00000399438 PABPN1Q86U42 306 aaKnown RBP eCLIP9.79□□□□□ -0.84
TRAPPC13-202ENST00000399438 NBR1Q14596 966 aa9.79□□□□□ -0.84
TRAPPC13-202ENST00000399438 PAXIP1Q6ZW49 1069 aaPredicted RBP9.79□□□□□ -0.84
TRAPPC13-202ENST00000399438 TSHZ2Q9NRE2 1034 aa9.77□□□□□ -0.84
TRAPPC13-202ENST00000399438 BBXQ8WY36 941 aaPredicted RBP9.75□□□□□ -0.85
TRAPPC13-202ENST00000399438 CFAP44Q96MT7 982 aa9.73□□□□□ -0.85
TRAPPC13-202ENST00000399438 FAM9AQ8IZU1 332 aaPredicted RBP9.72□□□□□ -0.85
TRAPPC13-202ENST00000399438 PCGF6Q9BYE7 350 aa9.72□□□□□ -0.85
TRAPPC13-202ENST00000399438 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.71□□□□□ -0.85
TRAPPC13-202ENST00000399438 NPM1P06748 294 aaKnown RBP eCLIP9.71□□□□□ -0.86
TRAPPC13-202ENST00000399438 PKD2Q13563 968 aa9.71□□□□□ -0.86
TRAPPC13-202ENST00000399438 DNAJC5Q9H3Z4 198 aa9.7□□□□□ -0.86
TRAPPC13-202ENST00000399438 IGSF3O75054 1194 aa9.67□□□□□ -0.86
TRAPPC13-202ENST00000399438 CECR2Q9BXF3 1484 aa9.65□□□□□ -0.86
TRAPPC13-202ENST00000399438 CHMP4AQ9BY43 222 aa9.63□□□□□ -0.87
TRAPPC13-202ENST00000399438 CCDC9Q9Y3X0 531 aaKnown RBP9.63□□□□□ -0.87
TRAPPC13-202ENST00000399438 BAZ1AQ9NRL2 1556 aaPredicted RBP9.62□□□□□ -0.87
TRAPPC13-202ENST00000399438 CNKSR2Q8WXI2 1034 aa9.62□□□□□ -0.87
TRAPPC13-202ENST00000399438 SMARCA4P51532 1647 aa9.61□□□□□ -0.87
TRAPPC13-202ENST00000399438 PPARGC1BQ86YN6 1023 aaKnown RBP9.61□□□□□ -0.87
TRAPPC13-202ENST00000399438 EIF4G1Q04637 1599 aaKnown RBP9.6□□□□□ -0.87
TRAPPC13-202ENST00000399438 SAMD1Q6SPF0 538 aaPredicted RBP9.6□□□□□ -0.87
TRAPPC13-202ENST00000399438 MROH2BQ7Z745 1585 aa9.59□□□□□ -0.87
TRAPPC13-202ENST00000399438 TRHP20396 242 aaPredicted RBP9.58□□□□□ -0.88
TRAPPC13-202ENST00000399438 PDIA4P13667 645 aaKnown RBP9.57□□□□□ -0.88
TRAPPC13-202ENST00000399438 CDK11BP21127 795 aaKnown RBP9.57□□□□□ -0.88
TRAPPC13-202ENST00000399438 CDK11AQ9UQ88 783 aaPredicted RBP9.57□□□□□ -0.88
TRAPPC13-202ENST00000399438 RSF1Q96T23 1441 aaPredicted RBP9.56□□□□□ -0.88
TRAPPC13-202ENST00000399438 BRPF1P55201 1214 aaPredicted RBP9.53□□□□□ -0.88
TRAPPC13-202ENST00000399438 PEG3Q9GZU2 1588 aa9.53□□□□□ -0.88
TRAPPC13-202ENST00000399438 SPRYD3Q8NCJ5 442 aa9.52□□□□□ -0.88
TRAPPC13-202ENST00000399438 NECTIN2Q92692 538 aa9.52□□□□□ -0.89
TRAPPC13-202ENST00000399438 DNAJC5BQ9UF47 199 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms