RNA–Protein interactions for RNA: ENST00000399042.4

BRCC3-206, Transcript of BRCA1/BRCA2-containing complex subunit 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene BRCC3, Length 954 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3-206ENST00000399042 AEBP2Q6ZN18 517 aaPredicted RBP21.42■■□□□ 1.02
BRCC3-206ENST00000399042 CHIC1Q5VXU3 224 aa20.82■□□□□ 0.92
BRCC3-206ENST00000399042 NISCHQ9Y2I1 1504 aa20.68■□□□□ 0.9
BRCC3-206ENST00000399042 PHF23Q9BUL5 403 aaPredicted RBP18.32■□□□□ 0.52
BRCC3-206ENST00000399042 SENP3Q9H4L4 574 aaPredicted RBP18.16■□□□□ 0.5
BRCC3-206ENST00000399042 CCDC180Q9P1Z9 1646 aa18.15■□□□□ 0.5
BRCC3-206ENST00000399042 ABCC9O60706 1549 aa17.67■□□□□ 0.42
BRCC3-206ENST00000399042 DCAF8L2P0C7V8 631 aa17.5■□□□□ 0.39
BRCC3-206ENST00000399042 ZCCHC6Q5VYS8 1495 aaKnown RBP17.25■□□□□ 0.35
BRCC3-206ENST00000399042 NACADO15069 1562 aa17.08■□□□□ 0.32
BRCC3-206ENST00000399042 DCAF1Q9Y4B6 1507 aa17.06■□□□□ 0.32
BRCC3-206ENST00000399042 RB1CC1Q8TDY2 1594 aa17.05■□□□□ 0.32
BRCC3-206ENST00000399042 MYO15BQ96JP2 1530 aa17■□□□□ 0.31
BRCC3-206ENST00000399042 FOXD1Q16676 465 aa16.89■□□□□ 0.29
BRCC3-206ENST00000399042 PLPPR3Q6T4P5 718 aa16.85■□□□□ 0.29
BRCC3-206ENST00000399042 SHROOM4Q9ULL8 1493 aa16.74■□□□□ 0.27
BRCC3-206ENST00000399042 SCRIBQ14160 1630 aa16.72■□□□□ 0.27
BRCC3-206ENST00000399042 PABPN1Q86U42 306 aaKnown RBP eCLIP16.65■□□□□ 0.26
BRCC3-206ENST00000399042 UNC13AQ9UPW8 1703 aa16.48■□□□□ 0.23
BRCC3-206ENST00000399042 BICRAQ9NZM4 1560 aa16.41■□□□□ 0.22
BRCC3-206ENST00000399042 PPP6R1Q9UPN7 881 aa16.19■□□□□ 0.18
BRCC3-206ENST00000399042 ADRA2BP18089 450 aa16.14■□□□□ 0.17
BRCC3-206ENST00000399042 CECR2Q9BXF3 1484 aa16.1■□□□□ 0.17
BRCC3-206ENST00000399042 EIF4G1Q04637 1599 aaKnown RBP16.03■□□□□ 0.16
BRCC3-206ENST00000399042 BAZ1AQ9NRL2 1556 aaPredicted RBP16.02■□□□□ 0.16
BRCC3-206ENST00000399042 SUPT5HO00267 1087 aaKnown RBP15.97■□□□□ 0.15
BRCC3-206ENST00000399042 SMARCA4P51532 1647 aa15.95■□□□□ 0.14
BRCC3-206ENST00000399042 MROH2BQ7Z745 1585 aa15.94■□□□□ 0.14
BRCC3-206ENST00000399042 RSF1Q96T23 1441 aaPredicted RBP15.91■□□□□ 0.14
BRCC3-206ENST00000399042 DNAJC5BQ9UF47 199 aa15.9■□□□□ 0.14
BRCC3-206ENST00000399042 CC2D2AQ9P2K1 1620 aa15.9■□□□□ 0.14
BRCC3-206ENST00000399042 PIAS4Q8N2W9 510 aaPredicted RBP15.86■□□□□ 0.13
BRCC3-206ENST00000399042 ATAD2BQ9ULI0 1458 aa15.84■□□□□ 0.13
BRCC3-206ENST00000399042 SMARCA2P51531 1590 aa15.83■□□□□ 0.13
BRCC3-206ENST00000399042 BAZ1BQ9UIG0 1483 aaKnown RBP15.78■□□□□ 0.12
BRCC3-206ENST00000399042 WIZO95785 1651 aa15.77■□□□□ 0.12
BRCC3-206ENST00000399042 NCAPD3P42695 1498 aa15.77■□□□□ 0.11
BRCC3-206ENST00000399042 PEG3Q9GZU2 1588 aa15.72■□□□□ 0.11
BRCC3-206ENST00000399042 HMGXB3Q12766 1538 aa15.68■□□□□ 0.1
BRCC3-206ENST00000399042 TOP2AP11388 1531 aaKnown RBP15.63■□□□□ 0.09
BRCC3-206ENST00000399042 MSH5O43196 834 aa15.59■□□□□ 0.09
BRCC3-206ENST00000399042 CCDC88BA6NC98 1476 aa15.5■□□□□ 0.07
BRCC3-206ENST00000399042 CADPSQ9ULU8 1353 aa15.39■□□□□ 0.05
BRCC3-206ENST00000399042 POTEDQ86YR6 584 aa15.35■□□□□ 0.05
BRCC3-206ENST00000399042 NESP48681 1621 aa15.32■□□□□ 0.04
BRCC3-206ENST00000399042 CFTRP13569 1480 aa15.3■□□□□ 0.04
BRCC3-206ENST00000399042 PDS5BQ9NTI5 1447 aa15.29■□□□□ 0.04
BRCC3-206ENST00000399042 LAMC3Q9Y6N6 1575 aa15.28■□□□□ 0.04
BRCC3-206ENST00000399042 ERCC6Q03468 1493 aa15.27■□□□□ 0.04
BRCC3-206ENST00000399042 FANCD2Q9BXW9 1451 aa15.2■□□□□ 0.02
BRCC3-206ENST00000399042 CEP164Q9UPV0 1460 aa15.16■□□□□ 0.02
BRCC3-206ENST00000399042 PRDM2Q13029 1718 aa15.06■□□□□ 0
BRCC3-206ENST00000399042 TRIM41Q8WV44 630 aa15.06■□□□□ 0
BRCC3-206ENST00000399042 MRC2Q9UBG0 1479 aa15.06■□□□□ 0
BRCC3-206ENST00000399042 KIF21AQ7Z4S6 1674 aa15.06■□□□□ 0
BRCC3-206ENST00000399042 WRNQ14191 1432 aaPredicted RBP eCLIP15.04■□□□□ -0
BRCC3-206ENST00000399042 ABCC8Q09428 1581 aa15.02□□□□□ -0.01
BRCC3-206ENST00000399042 URB2Q14146 1524 aaKnown RBP14.97□□□□□ -0.01
BRCC3-206ENST00000399042 TOPBP1Q92547 1522 aa14.96□□□□□ -0.02
BRCC3-206ENST00000399042 DNMBPQ6XZF7 1577 aa14.94□□□□□ -0.02
BRCC3-206ENST00000399042 CUX1P39880 1505 aa14.94□□□□□ -0.02
BRCC3-206ENST00000399042 WDR62O43379 1518 aa14.92□□□□□ -0.02
BRCC3-206ENST00000399042 THOC2Q8NI27 1593 aaKnown RBP14.91□□□□□ -0.02
BRCC3-206ENST00000399042 SYNJ1O43426 1573 aa14.89□□□□□ -0.03
BRCC3-206ENST00000399042 FGD5Q6ZNL6 1462 aa14.89□□□□□ -0.03
BRCC3-206ENST00000399042 SOGA1O94964 1423 aa14.88□□□□□ -0.03
BRCC3-206ENST00000399042 TOP2BQ02880 1626 aa14.87□□□□□ -0.03
BRCC3-206ENST00000399042 CUX2O14529 1486 aa14.87□□□□□ -0.03
BRCC3-206ENST00000399042 POLA1P09884 1462 aaPredicted RBP14.85□□□□□ -0.03
BRCC3-206ENST00000399042 PPP4R3CPQ6ZMV5 832 aa14.84□□□□□ -0.03
BRCC3-206ENST00000399042 RAD54L2Q9Y4B4 1467 aa14.83□□□□□ -0.03
BRCC3-206ENST00000399042 IFT140Q96RY7 1462 aa14.82□□□□□ -0.04
BRCC3-206ENST00000399042 BIVM-ERCC5R4GMW8 1640 aa14.82□□□□□ -0.04
BRCC3-206ENST00000399042 TDRD9Q8NDG6 1382 aaKnown RBP14.78□□□□□ -0.04
BRCC3-206ENST00000399042 FAM9AQ8IZU1 332 aaPredicted RBP14.78□□□□□ -0.04
BRCC3-206ENST00000399042 SCAF1Q9H7N4 1312 aaKnown RBP14.75□□□□□ -0.05
BRCC3-206ENST00000399042 KIF27Q86VH2 1401 aa14.74□□□□□ -0.05
BRCC3-206ENST00000399042 ABCA10Q8WWZ4 1543 aa14.72□□□□□ -0.05
BRCC3-206ENST00000399042 AQRO60306 1485 aaKnown RBP eCLIP14.72□□□□□ -0.053e-7■■■□□ 19
BRCC3-206ENST00000399042 ZNF608Q9ULD9 1512 aaPredicted RBP14.71□□□□□ -0.06
BRCC3-206ENST00000399042 TARBP1Q13395 1621 aaKnown RBP14.69□□□□□ -0.06
BRCC3-206ENST00000399042 GAPVD1Q14C86 1478 aa14.69□□□□□ -0.06
BRCC3-206ENST00000399042 MAPK8IP2Q13387 824 aaPredicted RBP14.68□□□□□ -0.06
BRCC3-206ENST00000399042 FBLN2P98095 1184 aa14.67□□□□□ -0.06
BRCC3-206ENST00000399042 CSRNP3Q8WYN3 585 aa14.65□□□□□ -0.06
BRCC3-206ENST00000399042 GRIN2BQ13224 1484 aa14.63□□□□□ -0.07
BRCC3-206ENST00000399042 EHMT2Q96KQ7 1210 aa14.63□□□□□ -0.07
BRCC3-206ENST00000399042 EEA1Q15075 1411 aa14.63□□□□□ -0.07
BRCC3-206ENST00000399042 RUSC2Q8N2Y8 1516 aa14.62□□□□□ -0.07
BRCC3-206ENST00000399042 CHMP7Q8WUX9 453 aaPredicted RBP14.62□□□□□ -0.07
BRCC3-206ENST00000399042 EIF4G3O43432 1585 aaKnown RBP14.61□□□□□ -0.07
BRCC3-206ENST00000399042 IGF1RP08069 1367 aa14.6□□□□□ -0.07
BRCC3-206ENST00000399042 WDR97A6NE52 1622 aa14.59□□□□□ -0.07
BRCC3-206ENST00000399042 ABCA5Q8WWZ7 1642 aa14.57□□□□□ -0.08
BRCC3-206ENST00000399042 SNAPC4Q5SXM2 1469 aa14.57□□□□□ -0.08
BRCC3-206ENST00000399042 CARMIL1Q5VZK9 1371 aa14.56□□□□□ -0.08
BRCC3-206ENST00000399042 ERICH3Q5RHP9 1530 aa14.55□□□□□ -0.08
BRCC3-206ENST00000399042 MAGI1Q96QZ7 1491 aaPredicted RBP14.53□□□□□ -0.08
BRCC3-206ENST00000399042 FHAD1B1AJZ9 1412 aa14.52□□□□□ -0.08
BRCC3-206ENST00000399042 UBTFP17480 764 aaKnown RBP14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms