RNA–Protein interactions for RNA: ENST00000398488.5

MBD1-207, Transcript of methyl-CpG binding domain protein 1, humanhuman

TSL 1 (best) BASIC

Gene MBD1, Length 1,512 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD1-207ENST00000398488 NISCHQ9Y2I1 1504 aa38.14■■■■□ 3.7
MBD1-207ENST00000398488 CCDC180Q9P1Z9 1646 aa33.73■■■□□ 2.99
MBD1-207ENST00000398488 ABCC9O60706 1549 aa32.99■■■□□ 2.87
MBD1-207ENST00000398488 DCAF8L2P0C7V8 631 aa31.84■■■□□ 2.69
MBD1-207ENST00000398488 ZCCHC6Q5VYS8 1495 aaKnown RBP31.81■■■□□ 2.68
MBD1-207ENST00000398488 NACADO15069 1562 aa31.69■■■□□ 2.66
MBD1-207ENST00000398488 RB1CC1Q8TDY2 1594 aa31.68■■■□□ 2.66
MBD1-207ENST00000398488 MYO15BQ96JP2 1530 aa31.53■■■□□ 2.64
MBD1-207ENST00000398488 DCAF1Q9Y4B6 1507 aa31.49■■■□□ 2.63
MBD1-207ENST00000398488 UNC13AQ9UPW8 1703 aa31.06■■■□□ 2.56
MBD1-207ENST00000398488 SCRIBQ14160 1630 aa30.91■■■□□ 2.54
MBD1-207ENST00000398488 PABPN1Q86U42 306 aaKnown RBP eCLIP30.91■■■□□ 2.54
MBD1-207ENST00000398488 BICRAQ9NZM4 1560 aa30.85■■■□□ 2.53
MBD1-207ENST00000398488 SHROOM4Q9ULL8 1493 aa30.34■■■□□ 2.45
MBD1-207ENST00000398488 DNAJC5BQ9UF47 199 aa30.24■■■□□ 2.43
MBD1-207ENST00000398488 EIF4G1Q04637 1599 aaKnown RBP29.96■■■□□ 2.39
MBD1-207ENST00000398488 CC2D2AQ9P2K1 1620 aa29.81■■■□□ 2.36
MBD1-207ENST00000398488 CECR2Q9BXF3 1484 aa29.8■■■□□ 2.36
MBD1-207ENST00000398488 SMARCA4P51532 1647 aa29.55■■■□□ 2.32
MBD1-207ENST00000398488 BAZ1AQ9NRL2 1556 aaPredicted RBP29.49■■■□□ 2.31
MBD1-207ENST00000398488 MROH2BQ7Z745 1585 aa29.46■■■□□ 2.31
MBD1-207ENST00000398488 ATAD2BQ9ULI0 1458 aa29.36■■■□□ 2.29
MBD1-207ENST00000398488 NCAPD3P42695 1498 aa29.29■■■□□ 2.28
MBD1-207ENST00000398488 SMARCA2P51531 1590 aa29.25■■■□□ 2.27
MBD1-207ENST00000398488 PEG3Q9GZU2 1588 aa29.22■■■□□ 2.27
MBD1-207ENST00000398488 RSF1Q96T23 1441 aaPredicted RBP29.17■■■□□ 2.26
MBD1-207ENST00000398488 WIZO95785 1651 aa29.14■■■□□ 2.26
MBD1-207ENST00000398488 HMGXB3Q12766 1538 aa29.12■■■□□ 2.25
MBD1-207ENST00000398488 BAZ1BQ9UIG0 1483 aaKnown RBP29.08■■■□□ 2.25
MBD1-207ENST00000398488 TOP2AP11388 1531 aaKnown RBP28.77■■■□□ 2.2
MBD1-207ENST00000398488 NESP48681 1621 aa28.64■■■□□ 2.18
MBD1-207ENST00000398488 SUPT5HO00267 1087 aaKnown RBP28.59■■■□□ 2.17
MBD1-207ENST00000398488 CCDC88BA6NC98 1476 aa28.5■■■□□ 2.15
MBD1-207ENST00000398488 CADPSQ9ULU8 1353 aa28.45■■■□□ 2.15
MBD1-207ENST00000398488 LAMC3Q9Y6N6 1575 aa28.43■■■□□ 2.14
MBD1-207ENST00000398488 CFTRP13569 1480 aa28.32■■■□□ 2.12
MBD1-207ENST00000398488 ERCC6Q03468 1493 aa28.32■■■□□ 2.12
MBD1-207ENST00000398488 PDS5BQ9NTI5 1447 aa28.24■■■□□ 2.11
MBD1-207ENST00000398488 KIF21AQ7Z4S6 1674 aa28.23■■■□□ 2.11
MBD1-207ENST00000398488 FANCD2Q9BXW9 1451 aa28.13■■■□□ 2.09
MBD1-207ENST00000398488 THOC2Q8NI27 1593 aaKnown RBP28.09■■■□□ 2.09
MBD1-207ENST00000398488 PRDM2Q13029 1718 aa28.04■■■□□ 2.08
MBD1-207ENST00000398488 CEP164Q9UPV0 1460 aa28.04■■■□□ 2.08
MBD1-207ENST00000398488 MRC2Q9UBG0 1479 aa27.98■■■□□ 2.07
MBD1-207ENST00000398488 CUX2O14529 1486 aa27.93■■■□□ 2.06
MBD1-207ENST00000398488 URB2Q14146 1524 aaKnown RBP27.89■■■□□ 2.06
MBD1-207ENST00000398488 WDR62O43379 1518 aa27.88■■■□□ 2.05
MBD1-207ENST00000398488 TOPBP1Q92547 1522 aa27.72■■■□□ 2.03
MBD1-207ENST00000398488 DNMBPQ6XZF7 1577 aa27.65■■■□□ 2.02
MBD1-207ENST00000398488 CUX1P39880 1505 aa27.61■■■□□ 2.01
MBD1-207ENST00000398488 ABCC8Q09428 1581 aa27.6■■■□□ 2.01
MBD1-207ENST00000398488 POLA1P09884 1462 aaPredicted RBP27.5■■□□□ 1.99
MBD1-207ENST00000398488 FGD5Q6ZNL6 1462 aa27.46■■□□□ 1.99
MBD1-207ENST00000398488 IFT140Q96RY7 1462 aa27.44■■□□□ 1.98
MBD1-207ENST00000398488 WRNQ14191 1432 aaPredicted RBP eCLIP27.44■■□□□ 1.98
MBD1-207ENST00000398488 RAD54L2Q9Y4B4 1467 aa27.43■■□□□ 1.98
MBD1-207ENST00000398488 SYNJ1O43426 1573 aa27.43■■□□□ 1.98
MBD1-207ENST00000398488 ZNF608Q9ULD9 1512 aaPredicted RBP27.42■■□□□ 1.98
MBD1-207ENST00000398488 TARBP1Q13395 1621 aaKnown RBP27.41■■□□□ 1.98
MBD1-207ENST00000398488 SOGA1O94964 1423 aa27.37■■□□□ 1.97
MBD1-207ENST00000398488 TOP2BQ02880 1626 aa27.35■■□□□ 1.97
MBD1-207ENST00000398488 BIVM-ERCC5R4GMW8 1640 aa27.35■■□□□ 1.97
MBD1-207ENST00000398488 AQRO60306 1485 aaKnown RBP eCLIP27.27■■□□□ 1.966e-7■■■□□ 18.9
MBD1-207ENST00000398488 TDRD9Q8NDG6 1382 aaKnown RBP27.25■■□□□ 1.95
MBD1-207ENST00000398488 EIF4G3O43432 1585 aaKnown RBP27.24■■□□□ 1.95
MBD1-207ENST00000398488 WDR97A6NE52 1622 aa27.2■■□□□ 1.95
MBD1-207ENST00000398488 ABCA10Q8WWZ4 1543 aa27.17■■□□□ 1.94
MBD1-207ENST00000398488 ABCA5Q8WWZ7 1642 aa27.06■■□□□ 1.92
MBD1-207ENST00000398488 GAPVD1Q14C86 1478 aa27.05■■□□□ 1.92
MBD1-207ENST00000398488 GRIN2BQ13224 1484 aa27■■□□□ 1.91
MBD1-207ENST00000398488 SNAPC4Q5SXM2 1469 aa26.99■■□□□ 1.91
MBD1-207ENST00000398488 PBRM1Q86U86 1689 aa26.96■■□□□ 1.91
MBD1-207ENST00000398488 DNAJC5Q9H3Z4 198 aa26.95■■□□□ 1.91
MBD1-207ENST00000398488 TRIM41Q8WV44 630 aa26.92■■□□□ 1.9
MBD1-207ENST00000398488 MAGI1Q96QZ7 1491 aaPredicted RBP26.88■■□□□ 1.89
MBD1-207ENST00000398488 CHD1O14646 1710 aa26.88■■□□□ 1.89
MBD1-207ENST00000398488 FBLN2P98095 1184 aa26.87■■□□□ 1.89
MBD1-207ENST00000398488 OSCARQ8IYS5 282 aa26.85■■□□□ 1.89
MBD1-207ENST00000398488 KIF27Q86VH2 1401 aa26.82■■□□□ 1.88
MBD1-207ENST00000398488 ERICH3Q5RHP9 1530 aa26.81■■□□□ 1.88
MBD1-207ENST00000398488 RUSC2Q8N2Y8 1516 aa26.81■■□□□ 1.88
MBD1-207ENST00000398488 CHIC1Q5VXU3 224 aa26.8■■□□□ 1.88
MBD1-207ENST00000398488 SYNJ2O15056 1496 aa26.8■■□□□ 1.88
MBD1-207ENST00000398488 CHMP7Q8WUX9 453 aaPredicted RBP26.79■■□□□ 1.88
MBD1-207ENST00000398488 ADAMTS12P58397 1594 aa26.78■■□□□ 1.88
MBD1-207ENST00000398488 IGF1RP08069 1367 aa26.78■■□□□ 1.88
MBD1-207ENST00000398488 FHAD1B1AJZ9 1412 aa26.73■■□□□ 1.87
MBD1-207ENST00000398488 GRIN2AQ12879 1464 aa26.67■■□□□ 1.86
MBD1-207ENST00000398488 CLASP1Q7Z460 1538 aa26.59■■□□□ 1.85
MBD1-207ENST00000398488 CARMIL1Q5VZK9 1371 aa26.58■■□□□ 1.85
MBD1-207ENST00000398488 CEP170Q5SW79 1584 aa26.58■■□□□ 1.85
MBD1-207ENST00000398488 CUL7Q14999 1698 aa26.58■■□□□ 1.84
MBD1-207ENST00000398488 NUP160Q12769 1436 aa26.56■■□□□ 1.84
MBD1-207ENST00000398488 FAM9AQ8IZU1 332 aaPredicted RBP26.46■■□□□ 1.83
MBD1-207ENST00000398488 ARHGEF11O15085 1522 aa26.44■■□□□ 1.82
MBD1-207ENST00000398488 RIMBP3CA6NJZ7 1639 aa26.44■■□□□ 1.82
MBD1-207ENST00000398488 RIMBP3BA6NNM3 1639 aa26.44■■□□□ 1.82
MBD1-207ENST00000398488 RIMBP3Q9UFD9 1639 aa26.44■■□□□ 1.82
MBD1-207ENST00000398488 CSRNP3Q8WYN3 585 aa26.43■■□□□ 1.82
MBD1-207ENST00000398488 RAPGEF2Q9Y4G8 1499 aa26.41■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms