RNA–Protein interactions for RNA: ENST00000397381.4

UCA1-201, Transcript of urothelial cancer associated 1, humanhuman

TSL 1 (best) BASIC

Gene UCA1, Length 2,299 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UCA1-201ENST00000397381 NISCHQ9Y2I1 1504 aa18.41■□□□□ 0.54
UCA1-201ENST00000397381 AEBP2Q6ZN18 517 aaPredicted RBP16.64■□□□□ 0.25
UCA1-201ENST00000397381 CHIC1Q5VXU3 224 aa15.99■□□□□ 0.15
UCA1-201ENST00000397381 SHROOM4Q9ULL8 1493 aa15.8■□□□□ 0.12
UCA1-201ENST00000397381 SUPT5HO00267 1087 aaKnown RBP15.67■□□□□ 0.1
UCA1-201ENST00000397381 ZCCHC6Q5VYS8 1495 aaKnown RBP15.65■□□□□ 0.1
UCA1-201ENST00000397381 HRCP23327 699 aa15.6■□□□□ 0.09
UCA1-201ENST00000397381 CCDC180Q9P1Z9 1646 aa15.57■□□□□ 0.08
UCA1-201ENST00000397381 MYO15BQ96JP2 1530 aa15.47■□□□□ 0.07
UCA1-201ENST00000397381 PCGF6Q9BYE7 350 aa15.28■□□□□ 0.04
UCA1-201ENST00000397381 DCAF1Q9Y4B6 1507 aa15.28■□□□□ 0.04
UCA1-201ENST00000397381 PPARGC1BQ86YN6 1023 aaKnown RBP15.1■□□□□ 0.01
UCA1-201ENST00000397381 DCAF8L2P0C7V8 631 aa15.02□□□□□ -0.01
UCA1-201ENST00000397381 TRIM26Q12899 539 aaPredicted RBP15□□□□□ -0.01
UCA1-201ENST00000397381 LOC105371045A0A1W2PR82 267 aa14.95□□□□□ -0.02
UCA1-201ENST00000397381 ZEB1P37275 1124 aaPredicted RBP14.9□□□□□ -0.02
UCA1-201ENST00000397381 ABCC9O60706 1549 aa14.85□□□□□ -0.03
UCA1-201ENST00000397381 PELP1Q8IZL8 1130 aaKnown RBP14.83□□□□□ -0.04
UCA1-201ENST00000397381 RSF1Q96T23 1441 aaPredicted RBP14.67□□□□□ -0.06
UCA1-201ENST00000397381 TRIM41Q8WV44 630 aa14.63□□□□□ -0.07
UCA1-201ENST00000397381 RB1CC1Q8TDY2 1594 aa14.62□□□□□ -0.07
UCA1-201ENST00000397381 SCRIBQ14160 1630 aa14.54□□□□□ -0.08
UCA1-201ENST00000397381 SCAF1Q9H7N4 1312 aaKnown RBP14.54□□□□□ -0.08
UCA1-201ENST00000397381 FAM9AQ8IZU1 332 aaPredicted RBP14.44□□□□□ -0.1
UCA1-201ENST00000397381 ACIN1Q9UKV3 1341 aaKnown RBP14.33□□□□□ -0.11
UCA1-201ENST00000397381 MROH2BQ7Z745 1585 aa14.3□□□□□ -0.12
UCA1-201ENST00000397381 NACADO15069 1562 aa14.29□□□□□ -0.12
UCA1-201ENST00000397381 CCER1Q8TC90 406 aaPredicted RBP14.28□□□□□ -0.12
UCA1-201ENST00000397381 CECR2Q9BXF3 1484 aa14.28□□□□□ -0.12
UCA1-201ENST00000397381 EIF4G1Q04637 1599 aaKnown RBP14.25□□□□□ -0.13
UCA1-201ENST00000397381 EHMT2Q96KQ7 1210 aa14.25□□□□□ -0.13
UCA1-201ENST00000397381 BAZ1AQ9NRL2 1556 aaPredicted RBP14.25□□□□□ -0.13
UCA1-201ENST00000397381 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.24□□□□□ -0.13
UCA1-201ENST00000397381 CENPBP07199 599 aaPredicted RBP14.24□□□□□ -0.13
UCA1-201ENST00000397381 WIZO95785 1651 aa14.24□□□□□ -0.13
UCA1-201ENST00000397381 MYT1Q01538 1121 aa14.24□□□□□ -0.13
UCA1-201ENST00000397381 NEUROD1Q13562 356 aa14.23□□□□□ -0.13
UCA1-201ENST00000397381 WRNQ14191 1432 aaPredicted RBP eCLIP14.23□□□□□ -0.13
UCA1-201ENST00000397381 DIEXFQ68CQ4 756 aaKnown RBP14.2□□□□□ -0.14
UCA1-201ENST00000397381 SENP3Q9H4L4 574 aaPredicted RBP14.2□□□□□ -0.14
UCA1-201ENST00000397381 GTF3C3Q9Y5Q9 886 aa14.13□□□□□ -0.15
UCA1-201ENST00000397381 CEP162Q5TB80 1403 aa14.09□□□□□ -0.15
UCA1-201ENST00000397381 TOP2AP11388 1531 aaKnown RBP14.08□□□□□ -0.16
UCA1-201ENST00000397381 TNIKQ9UKE5 1360 aa14.07□□□□□ -0.16
UCA1-201ENST00000397381 EEA1Q15075 1411 aa14.06□□□□□ -0.16
UCA1-201ENST00000397381 ZNF316A6NFI3 1004 aaPredicted RBP14.04□□□□□ -0.16
UCA1-201ENST00000397381 CCDC88BA6NC98 1476 aa14.02□□□□□ -0.16
UCA1-201ENST00000397381 ABCC8Q09428 1581 aa14.01□□□□□ -0.17
UCA1-201ENST00000397381 PHF23Q9BUL5 403 aaPredicted RBP14.01□□□□□ -0.17
UCA1-201ENST00000397381 SMARCA2P51531 1590 aa13.99□□□□□ -0.17
UCA1-201ENST00000397381 SMARCA4P51532 1647 aa13.96□□□□□ -0.17
UCA1-201ENST00000397381 SOGA1O94964 1423 aa13.95□□□□□ -0.18
UCA1-201ENST00000397381 GOLGA3Q08378 1498 aa13.93□□□□□ -0.18
UCA1-201ENST00000397381 CSRNP3Q8WYN3 585 aa13.93□□□□□ -0.18
UCA1-201ENST00000397381 TTBK1Q5TCY1 1321 aaPredicted RBP13.9□□□□□ -0.18
UCA1-201ENST00000397381 UBTFP17480 764 aaKnown RBP13.87□□□□□ -0.19
UCA1-201ENST00000397381 RUSC2Q8N2Y8 1516 aa13.85□□□□□ -0.19
UCA1-201ENST00000397381 KIF21BO75037 1637 aa13.83□□□□□ -0.19
UCA1-201ENST00000397381 CEP164Q9UPV0 1460 aa13.83□□□□□ -0.2
UCA1-201ENST00000397381 MIER1Q8N108 512 aa13.82□□□□□ -0.2
UCA1-201ENST00000397381 YTHDC1Q96MU7 727 aaKnown RBP13.81□□□□□ -0.2
UCA1-201ENST00000397381 CLSPNQ9HAW4 1339 aa13.77□□□□□ -0.21
UCA1-201ENST00000397381 VPS8Q8N3P4 1428 aa13.76□□□□□ -0.21
UCA1-201ENST00000397381 BAZ1BQ9UIG0 1483 aaKnown RBP13.76□□□□□ -0.21
UCA1-201ENST00000397381 CLIP1P30622 1438 aa13.76□□□□□ -0.21
UCA1-201ENST00000397381 UNC13AQ9UPW8 1703 aa13.75□□□□□ -0.21
UCA1-201ENST00000397381 HNRNPUL2Q1KMD3 747 aaKnown RBP13.74□□□□□ -0.21
UCA1-201ENST00000397381 PEG3Q9GZU2 1588 aa13.71□□□□□ -0.22
UCA1-201ENST00000397381 SYNJ1O43426 1573 aa13.7□□□□□ -0.22
UCA1-201ENST00000397381 APLP2Q06481 763 aa13.69□□□□□ -0.22
UCA1-201ENST00000397381 RAPGEF2Q9Y4G8 1499 aa13.61□□□□□ -0.23
UCA1-201ENST00000397381 DHX57Q6P158 1386 aaKnown RBP13.59□□□□□ -0.23
UCA1-201ENST00000397381 SUPT16HQ9Y5B9 1047 aaKnown RBP13.56□□□□□ -0.24
UCA1-201ENST00000397381 ERICH3Q5RHP9 1530 aa13.56□□□□□ -0.24
UCA1-201ENST00000397381 BICRAQ9NZM4 1560 aa13.55□□□□□ -0.24
UCA1-201ENST00000397381 TOP2BQ02880 1626 aa13.54□□□□□ -0.24
UCA1-201ENST00000397381 CUX2O14529 1486 aa13.52□□□□□ -0.25
UCA1-201ENST00000397381 BIVM-ERCC5R4GMW8 1640 aa13.51□□□□□ -0.25
UCA1-201ENST00000397381 RRBP1Q9P2E9 1410 aaKnown RBP13.5□□□□□ -0.25
UCA1-201ENST00000397381 ARAP1Q96P48 1450 aa13.5□□□□□ -0.25
UCA1-201ENST00000397381 ATAD2BQ9ULI0 1458 aa13.49□□□□□ -0.25
UCA1-201ENST00000397381 PRXQ9BXM0 1461 aa13.48□□□□□ -0.25
UCA1-201ENST00000397381 TSHZ2Q9NRE2 1034 aa13.43□□□□□ -0.26
UCA1-201ENST00000397381 RANGAP1P46060 587 aaPredicted RBP13.41□□□□□ -0.26
UCA1-201ENST00000397381 PABPN1Q86U42 306 aaKnown RBP eCLIP13.41□□□□□ -0.26
UCA1-201ENST00000397381 KANK4Q5T7N3 995 aaPredicted RBP13.41□□□□□ -0.26
UCA1-201ENST00000397381 CCNB3Q8WWL7 1395 aa13.4□□□□□ -0.26
UCA1-201ENST00000397381 ANP32EQ9BTT0 268 aa13.38□□□□□ -0.27
UCA1-201ENST00000397381 KIF27Q86VH2 1401 aa13.34□□□□□ -0.27
UCA1-201ENST00000397381 MAP3K1Q13233 1512 aa13.34□□□□□ -0.27
UCA1-201ENST00000397381 MAPKBP1O60336 1514 aa13.33□□□□□ -0.28
UCA1-201ENST00000397381 ARHGAP35Q9NRY4 1499 aa13.32□□□□□ -0.28
UCA1-201ENST00000397381 RAB3GAP2Q9H2M9 1393 aa13.3□□□□□ -0.28
UCA1-201ENST00000397381 CUX1P39880 1505 aa13.3□□□□□ -0.28
UCA1-201ENST00000397381 SETD5Q9C0A6 1442 aa13.27□□□□□ -0.28
UCA1-201ENST00000397381 TIAM1Q13009 1591 aa13.27□□□□□ -0.29
UCA1-201ENST00000397381 TIMELESSQ9UNS1 1208 aa13.27□□□□□ -0.29
UCA1-201ENST00000397381 HMGXB3Q12766 1538 aa13.25□□□□□ -0.29
UCA1-201ENST00000397381 KCNH8Q96L42 1107 aa13.24□□□□□ -0.29
UCA1-201ENST00000397381 WDR97A6NE52 1622 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms