RNA–Protein interactions for RNA: ENST00000396594.7

GNE-202, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

TSL 1 (best) BASIC

Gene GNE, Length 5,298 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-202ENST00000396594 NISCHQ9Y2I1 1504 aa27.04■■□□□ 1.92
GNE-202ENST00000396594 DCAF8L2P0C7V8 631 aa26.63■■□□□ 1.85
GNE-202ENST00000396594 SUPT5HO00267 1087 aaKnown RBP25.18■■□□□ 1.62
GNE-202ENST00000396594 FAM9AQ8IZU1 332 aaPredicted RBP24.93■■□□□ 1.58
GNE-202ENST00000396594 SHROOM4Q9ULL8 1493 aa24.73■■□□□ 1.55
GNE-202ENST00000396594 APLP2Q06481 763 aa24.67■■□□□ 1.54
GNE-202ENST00000396594 PELP1Q8IZL8 1130 aaKnown RBP24.54■■□□□ 1.52
GNE-202ENST00000396594 ZEB1P37275 1124 aaPredicted RBP24■■□□□ 1.43
GNE-202ENST00000396594 TRIM41Q8WV44 630 aa23.85■■□□□ 1.41
GNE-202ENST00000396594 EHMT2Q96KQ7 1210 aa23.55■■□□□ 1.36
GNE-202ENST00000396594 UBTFP17480 764 aaKnown RBP23.46■■□□□ 1.35
GNE-202ENST00000396594 CENPBP07199 599 aaPredicted RBP23.43■■□□□ 1.34
GNE-202ENST00000396594 CCER1Q8TC90 406 aaPredicted RBP23.43■■□□□ 1.34
GNE-202ENST00000396594 ATP1B4Q9UN42 357 aaPredicted RBP23.19■■□□□ 1.3
GNE-202ENST00000396594 PCGF6Q9BYE7 350 aa23.19■■□□□ 1.3
GNE-202ENST00000396594 TRIM26Q12899 539 aaPredicted RBP22.98■■□□□ 1.27
GNE-202ENST00000396594 NEFLP07196 543 aa22.97■■□□□ 1.27
GNE-202ENST00000396594 RANGAP1P46060 587 aaPredicted RBP22.95■■□□□ 1.26
GNE-202ENST00000396594 ERICH6Q7L0X2 663 aa22.89■■□□□ 1.26
GNE-202ENST00000396594 TTBK1Q5TCY1 1321 aaPredicted RBP22.87■■□□□ 1.25
GNE-202ENST00000396594 CCDC180Q9P1Z9 1646 aa22.84■■□□□ 1.25
GNE-202ENST00000396594 ABCC9O60706 1549 aa22.81■■□□□ 1.24
GNE-202ENST00000396594 MYT1Q01538 1121 aa22.69■■□□□ 1.22
GNE-202ENST00000396594 CHIC1Q5VXU3 224 aa22.67■■□□□ 1.22
GNE-202ENST00000396594 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.65■■□□□ 1.22
GNE-202ENST00000396594 HNRNPUL2Q1KMD3 747 aaKnown RBP22.65■■□□□ 1.22
GNE-202ENST00000396594 MYT1LQ9UL68 1186 aa22.57■■□□□ 1.2
GNE-202ENST00000396594 ZCCHC6Q5VYS8 1495 aaKnown RBP22.46■■□□□ 1.19
GNE-202ENST00000396594 HRCP23327 699 aa22.3■■□□□ 1.16
GNE-202ENST00000396594 PABPN1Q86U42 306 aaKnown RBP eCLIP22.28■■□□□ 1.16
GNE-202ENST00000396594 RB1CC1Q8TDY2 1594 aa22.23■■□□□ 1.15
GNE-202ENST00000396594 DAXXQ9UER7 740 aaPredicted RBP22.23■■□□□ 1.15
GNE-202ENST00000396594 ITGAEP38570 1179 aa22.19■■□□□ 1.14
GNE-202ENST00000396594 CDK11AQ9UQ88 783 aaPredicted RBP22.18■■□□□ 1.14
GNE-202ENST00000396594 SCRIBQ14160 1630 aa22.14■■□□□ 1.13
GNE-202ENST00000396594 ACIN1Q9UKV3 1341 aaKnown RBP22.12■■□□□ 1.13
GNE-202ENST00000396594 NACADO15069 1562 aa22.11■■□□□ 1.13
GNE-202ENST00000396594 FAM50AQ14320 339 aaKnown RBP22.08■■□□□ 1.13
GNE-202ENST00000396594 CSRNP3Q8WYN3 585 aa22.05■■□□□ 1.12
GNE-202ENST00000396594 YTHDC1Q96MU7 727 aaKnown RBP22.05■■□□□ 1.12
GNE-202ENST00000396594 LOC105371045A0A1W2PR82 267 aa22.04■■□□□ 1.12
GNE-202ENST00000396594 TRIM52Q96A61 297 aa22■■□□□ 1.11
GNE-202ENST00000396594 PPARGC1BQ86YN6 1023 aaKnown RBP21.99■■□□□ 1.11
GNE-202ENST00000396594 POLR3GLQ9BT43 218 aa21.98■■□□□ 1.11
GNE-202ENST00000396594 EEA1Q15075 1411 aa21.92■■□□□ 1.1
GNE-202ENST00000396594 DCAF1Q9Y4B6 1507 aa21.92■■□□□ 1.1
GNE-202ENST00000396594 ANP32CO43423 234 aa21.8■■□□□ 1.08
GNE-202ENST00000396594 SLC4A1APQ9BWU0 796 aaKnown RBP21.79■■□□□ 1.08
GNE-202ENST00000396594 DIEXFQ68CQ4 756 aaKnown RBP21.79■■□□□ 1.08
GNE-202ENST00000396594 FBLN2P98095 1184 aa21.77■■□□□ 1.08
GNE-202ENST00000396594 NEFMP07197 916 aa21.77■■□□□ 1.07
GNE-202ENST00000396594 CLSPNQ9HAW4 1339 aa21.77■■□□□ 1.07
GNE-202ENST00000396594 NPM1P06748 294 aaKnown RBP eCLIP21.71■■□□□ 1.07
GNE-202ENST00000396594 ZBTB47Q9UFB7 747 aaPredicted RBP21.68■■□□□ 1.06
GNE-202ENST00000396594 ZNF316A6NFI3 1004 aaPredicted RBP21.64■■□□□ 1.05
GNE-202ENST00000396594 ESF1Q9H501 851 aaKnown RBP21.61■■□□□ 1.05
GNE-202ENST00000396594 RSF1Q96T23 1441 aaPredicted RBP21.57■■□□□ 1.04
GNE-202ENST00000396594 NEUROD1Q13562 356 aa21.57■■□□□ 1.04
GNE-202ENST00000396594 RTL5Q5HYW3 569 aaPredicted RBP21.56■■□□□ 1.04
GNE-202ENST00000396594 BAZ1AQ9NRL2 1556 aaPredicted RBP21.53■■□□□ 1.04
GNE-202ENST00000396594 BAZ1BQ9UIG0 1483 aaKnown RBP21.51■■□□□ 1.03
GNE-202ENST00000396594 TONSLQ96HA7 1378 aa21.48■■□□□ 1.03
GNE-202ENST00000396594 GOLGA3Q08378 1498 aa21.47■■□□□ 1.03
GNE-202ENST00000396594 MYO15BQ96JP2 1530 aa21.43■■□□□ 1.02
GNE-202ENST00000396594 ZNF326Q5BKZ1 582 aaKnown RBP21.4■■□□□ 1.02
GNE-202ENST00000396594 KIF27Q86VH2 1401 aa21.38■■□□□ 1.01
GNE-202ENST00000396594 TSPY4P0CV99 314 aa21.38■■□□□ 1.01
GNE-202ENST00000396594 TSPY10P0CW01 314 aa21.38■■□□□ 1.01
GNE-202ENST00000396594 MTUS2Q5JR59 1369 aa21.38■■□□□ 1.01
GNE-202ENST00000396594 ZNF777Q9ULD5 760 aaPredicted RBP21.36■■□□□ 1.01
GNE-202ENST00000396594 CANXP27824 592 aaKnown RBP21.35■■□□□ 1.01
GNE-202ENST00000396594 CLIP1P30622 1438 aa21.34■■□□□ 1.01
GNE-202ENST00000396594 CHMP7Q8WUX9 453 aaPredicted RBP21.34■■□□□ 1.01
GNE-202ENST00000396594 BCANQ96GW7 911 aa21.34■■□□□ 1.01
GNE-202ENST00000396594 P3H3Q8IVL6 736 aa21.34■■□□□ 1.01
GNE-202ENST00000396594 CEP164Q9UPV0 1460 aa21.33■■□□□ 1.01
GNE-202ENST00000396594 WRNQ14191 1432 aaPredicted RBP eCLIP21.33■■□□□ 1
GNE-202ENST00000396594 STAG3Q9UJ98 1225 aa21.29■■□□□ 1
GNE-202ENST00000396594 CNGB1Q14028 1251 aaPredicted RBP21.22■□□□□ 0.99
GNE-202ENST00000396594 SMARCA2P51531 1590 aa21.22■□□□□ 0.99
GNE-202ENST00000396594 TNIKQ9UKE5 1360 aa21.2■□□□□ 0.98
GNE-202ENST00000396594 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.18■□□□□ 0.98
GNE-202ENST00000396594 SLC24A1O60721 1099 aa21.17■□□□□ 0.98
GNE-202ENST00000396594 FHAD1B1AJZ9 1412 aa21.17■□□□□ 0.98
GNE-202ENST00000396594 PLEKHD1A6NEE1 506 aa21.17■□□□□ 0.98
GNE-202ENST00000396594 CDCA8Q53HL2 280 aa21.12■□□□□ 0.97
GNE-202ENST00000396594 EIF5BO60841 1220 aaKnown RBP21.08■□□□□ 0.96
GNE-202ENST00000396594 ANP32AP39687 249 aaKnown RBP21.07■□□□□ 0.96
GNE-202ENST00000396594 CEP162Q5TB80 1403 aa21.06■□□□□ 0.96
GNE-202ENST00000396594 ERCC6Q03468 1493 aa21.06■□□□□ 0.96
GNE-202ENST00000396594 UPF2Q9HAU5 1272 aaKnown RBP21.03■□□□□ 0.96
GNE-202ENST00000396594 CHGAP10645 457 aaKnown RBP21.01■□□□□ 0.95
GNE-202ENST00000396594 ARID3CA6NKF2 412 aa21.01■□□□□ 0.95
GNE-202ENST00000396594 PDS5BQ9NTI5 1447 aa20.98■□□□□ 0.95
GNE-202ENST00000396594 WDR43Q15061 677 aaKnown RBP eCLIP20.96■□□□□ 0.95
GNE-202ENST00000396594 TIMELESSQ9UNS1 1208 aa20.95■□□□□ 0.94
GNE-202ENST00000396594 EIF4G2P78344 907 aaKnown RBP eCLIP20.94■□□□□ 0.94
GNE-202ENST00000396594 TMC1Q8TDI8 760 aa20.91■□□□□ 0.94
GNE-202ENST00000396594 GTF3C3Q9Y5Q9 886 aa20.88■□□□□ 0.93
GNE-202ENST00000396594 CARMIL2Q6F5E8 1435 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms