RNA–Protein interactions for RNA: ENST00000393546.8

PDLIM7-204, Transcript of PDZ and LIM domain 7, humanhuman

TSL 3

Gene PDLIM7, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-204ENST00000393546 NISCHQ9Y2I1 1504 aa45.75■■■■■ 4.91
PDLIM7-204ENST00000393546 CCDC180Q9P1Z9 1646 aa40.58■■■■■ 4.09
PDLIM7-204ENST00000393546 ABCC9O60706 1549 aa39.65■■■■□ 3.94
PDLIM7-204ENST00000393546 DCAF8L2P0C7V8 631 aa38.33■■■■□ 3.73
PDLIM7-204ENST00000393546 RB1CC1Q8TDY2 1594 aa38.19■■■■□ 3.7
PDLIM7-204ENST00000393546 NACADO15069 1562 aa38.17■■■■□ 3.7
PDLIM7-204ENST00000393546 ZCCHC6Q5VYS8 1495 aaKnown RBP38.09■■■■□ 3.69
PDLIM7-204ENST00000393546 MYO15BQ96JP2 1530 aa37.97■■■■□ 3.67
PDLIM7-204ENST00000393546 DCAF1Q9Y4B6 1507 aa37.85■■■■□ 3.65
PDLIM7-204ENST00000393546 UNC13AQ9UPW8 1703 aa37.26■■■■□ 3.56
PDLIM7-204ENST00000393546 PABPN1Q86U42 306 aaKnown RBP eCLIP37.13■■■■□ 3.53
PDLIM7-204ENST00000393546 SCRIBQ14160 1630 aa37.06■■■■□ 3.52
PDLIM7-204ENST00000393546 BICRAQ9NZM4 1560 aa36.99■■■■□ 3.51
PDLIM7-204ENST00000393546 SHROOM4Q9ULL8 1493 aa36.62■■■■□ 3.45
PDLIM7-204ENST00000393546 DNAJC5BQ9UF47 199 aa36.32■■■■□ 3.4
PDLIM7-204ENST00000393546 EIF4G1Q04637 1599 aaKnown RBP36.02■■■■□ 3.36
PDLIM7-204ENST00000393546 CC2D2AQ9P2K1 1620 aa35.85■■■■□ 3.33
PDLIM7-204ENST00000393546 CECR2Q9BXF3 1484 aa35.62■■■■□ 3.29
PDLIM7-204ENST00000393546 BAZ1AQ9NRL2 1556 aaPredicted RBP35.45■■■■□ 3.27
PDLIM7-204ENST00000393546 SMARCA4P51532 1647 aa35.45■■■■□ 3.27
PDLIM7-204ENST00000393546 ATAD2BQ9ULI0 1458 aa35.26■■■■□ 3.23
PDLIM7-204ENST00000393546 MROH2BQ7Z745 1585 aa35.25■■■■□ 3.23
PDLIM7-204ENST00000393546 NCAPD3P42695 1498 aa35.23■■■■□ 3.23
PDLIM7-204ENST00000393546 SMARCA2P51531 1590 aa35.23■■■■□ 3.23
PDLIM7-204ENST00000393546 PEG3Q9GZU2 1588 aa35.09■■■■□ 3.21
PDLIM7-204ENST00000393546 HMGXB3Q12766 1538 aa35.03■■■■□ 3.2
PDLIM7-204ENST00000393546 BAZ1BQ9UIG0 1483 aaKnown RBP34.98■■■■□ 3.19
PDLIM7-204ENST00000393546 RSF1Q96T23 1441 aaPredicted RBP34.91■■■■□ 3.18
PDLIM7-204ENST00000393546 WIZO95785 1651 aa34.87■■■■□ 3.17
PDLIM7-204ENST00000393546 TOP2AP11388 1531 aaKnown RBP34.5■■■■□ 3.11
PDLIM7-204ENST00000393546 NESP48681 1621 aa34.33■■■■□ 3.09
PDLIM7-204ENST00000393546 LAMC3Q9Y6N6 1575 aa34.27■■■■□ 3.08
PDLIM7-204ENST00000393546 CADPSQ9ULU8 1353 aa34.23■■■■□ 3.07
PDLIM7-204ENST00000393546 SUPT5HO00267 1087 aaKnown RBP34.21■■■■□ 3.07
PDLIM7-204ENST00000393546 ERCC6Q03468 1493 aa34.2■■■■□ 3.06
PDLIM7-204ENST00000393546 CCDC88BA6NC98 1476 aa34.14■■■■□ 3.06
PDLIM7-204ENST00000393546 PDS5BQ9NTI5 1447 aa34.09■■■■□ 3.05
PDLIM7-204ENST00000393546 CFTRP13569 1480 aa34.02■■■■□ 3.04
PDLIM7-204ENST00000393546 KIF21AQ7Z4S6 1674 aa33.9■■■■□ 3.02
PDLIM7-204ENST00000393546 FANCD2Q9BXW9 1451 aa33.82■■■■□ 3
PDLIM7-204ENST00000393546 CUX2O14529 1486 aa33.76■■■■□ 3
PDLIM7-204ENST00000393546 CEP164Q9UPV0 1460 aa33.76■■■■□ 3
PDLIM7-204ENST00000393546 THOC2Q8NI27 1593 aaKnown RBP33.73■■■□□ 2.99
PDLIM7-204ENST00000393546 PRDM2Q13029 1718 aa33.73■■■□□ 2.99
PDLIM7-204ENST00000393546 MRC2Q9UBG0 1479 aa33.69■■■□□ 2.98
PDLIM7-204ENST00000393546 WDR62O43379 1518 aa33.53■■■□□ 2.96
PDLIM7-204ENST00000393546 URB2Q14146 1524 aaKnown RBP33.45■■■□□ 2.95
PDLIM7-204ENST00000393546 ABCC8Q09428 1581 aa33.33■■■□□ 2.93
PDLIM7-204ENST00000393546 TOPBP1Q92547 1522 aa33.28■■■□□ 2.92
PDLIM7-204ENST00000393546 DNAJC5Q9H3Z4 198 aa33.24■■■□□ 2.91
PDLIM7-204ENST00000393546 DNMBPQ6XZF7 1577 aa33.24■■■□□ 2.91
PDLIM7-204ENST00000393546 IFT140Q96RY7 1462 aa33.06■■■□□ 2.88
PDLIM7-204ENST00000393546 CUX1P39880 1505 aa33.06■■■□□ 2.88
PDLIM7-204ENST00000393546 POLA1P09884 1462 aaPredicted RBP32.99■■■□□ 2.87
PDLIM7-204ENST00000393546 FGD5Q6ZNL6 1462 aa32.94■■■□□ 2.86
PDLIM7-204ENST00000393546 SOGA1O94964 1423 aa32.93■■■□□ 2.86
PDLIM7-204ENST00000393546 WRNQ14191 1432 aaPredicted RBP eCLIP32.93■■■□□ 2.86
PDLIM7-204ENST00000393546 TARBP1Q13395 1621 aaKnown RBP32.88■■■□□ 2.85
PDLIM7-204ENST00000393546 ZNF608Q9ULD9 1512 aaPredicted RBP32.87■■■□□ 2.85
PDLIM7-204ENST00000393546 RAD54L2Q9Y4B4 1467 aa32.87■■■□□ 2.85
PDLIM7-204ENST00000393546 TOP2BQ02880 1626 aa32.8■■■□□ 2.84
PDLIM7-204ENST00000393546 SYNJ1O43426 1573 aa32.79■■■□□ 2.84
PDLIM7-204ENST00000393546 BIVM-ERCC5R4GMW8 1640 aa32.78■■■□□ 2.84
PDLIM7-204ENST00000393546 AQRO60306 1485 aaKnown RBP eCLIP32.74■■■□□ 2.836e-10■■■■■ 29.7
PDLIM7-204ENST00000393546 EIF4G3O43432 1585 aaKnown RBP32.72■■■□□ 2.83
PDLIM7-204ENST00000393546 TDRD9Q8NDG6 1382 aaKnown RBP32.71■■■□□ 2.83
PDLIM7-204ENST00000393546 WDR97A6NE52 1622 aa32.64■■■□□ 2.82
PDLIM7-204ENST00000393546 ABCA10Q8WWZ4 1543 aa32.63■■■□□ 2.81
PDLIM7-204ENST00000393546 GAPVD1Q14C86 1478 aa32.52■■■□□ 2.8
PDLIM7-204ENST00000393546 GRIN2BQ13224 1484 aa32.5■■■□□ 2.79
PDLIM7-204ENST00000393546 OSCARQ8IYS5 282 aa32.49■■■□□ 2.79
PDLIM7-204ENST00000393546 ABCA5Q8WWZ7 1642 aa32.44■■■□□ 2.78
PDLIM7-204ENST00000393546 SNAPC4Q5SXM2 1469 aa32.42■■■□□ 2.78
PDLIM7-204ENST00000393546 FBLN2P98095 1184 aa32.41■■■□□ 2.78
PDLIM7-204ENST00000393546 MAGI1Q96QZ7 1491 aaPredicted RBP32.39■■■□□ 2.78
PDLIM7-204ENST00000393546 PBRM1Q86U86 1689 aa32.39■■■□□ 2.78
PDLIM7-204ENST00000393546 CHMP7Q8WUX9 453 aaPredicted RBP32.34■■■□□ 2.77
PDLIM7-204ENST00000393546 TRIM41Q8WV44 630 aa32.32■■■□□ 2.76
PDLIM7-204ENST00000393546 CHD1O14646 1710 aa32.3■■■□□ 2.76
PDLIM7-204ENST00000393546 SYNJ2O15056 1496 aa32.26■■■□□ 2.75
PDLIM7-204ENST00000393546 KIF27Q86VH2 1401 aa32.26■■■□□ 2.75
PDLIM7-204ENST00000393546 ERICH3Q5RHP9 1530 aa32.25■■■□□ 2.75
PDLIM7-204ENST00000393546 FHAD1B1AJZ9 1412 aa32.16■■■□□ 2.74
PDLIM7-204ENST00000393546 ADAMTS12P58397 1594 aa32.13■■■□□ 2.73
PDLIM7-204ENST00000393546 IGF1RP08069 1367 aa32.11■■■□□ 2.73
PDLIM7-204ENST00000393546 GRIN2AQ12879 1464 aa32.06■■■□□ 2.72
PDLIM7-204ENST00000393546 CHIC1Q5VXU3 224 aa31.97■■■□□ 2.71
PDLIM7-204ENST00000393546 RUSC2Q8N2Y8 1516 aa31.96■■■□□ 2.71
PDLIM7-204ENST00000393546 CUL7Q14999 1698 aa31.96■■■□□ 2.71
PDLIM7-204ENST00000393546 CLASP1Q7Z460 1538 aa31.95■■■□□ 2.7
PDLIM7-204ENST00000393546 CARMIL1Q5VZK9 1371 aa31.94■■■□□ 2.7
PDLIM7-204ENST00000393546 NUP160Q12769 1436 aa31.91■■■□□ 2.7
PDLIM7-204ENST00000393546 CEP170Q5SW79 1584 aa31.87■■■□□ 2.69
PDLIM7-204ENST00000393546 ARHGEF11O15085 1522 aa31.85■■■□□ 2.69
PDLIM7-204ENST00000393546 RIMBP3CA6NJZ7 1639 aa31.84■■■□□ 2.69
PDLIM7-204ENST00000393546 RIMBP3BA6NNM3 1639 aa31.84■■■□□ 2.69
PDLIM7-204ENST00000393546 RIMBP3Q9UFD9 1639 aa31.84■■■□□ 2.69
PDLIM7-204ENST00000393546 RAPGEF2Q9Y4G8 1499 aa31.73■■■□□ 2.67
PDLIM7-204ENST00000393546 CSRNP3Q8WYN3 585 aa31.72■■■□□ 2.67
PDLIM7-204ENST00000393546 EEA1Q15075 1411 aa31.71■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms