RNA–Protein interactions for RNA: ENST00000393196.7

NME1-203, Transcript of NME/NM23 nucleoside diphosphate kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NME1, Length 940 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME1-203ENST00000393196 NISCHQ9Y2I1 1504 aa45.18■■■■■ 4.82
NME1-203ENST00000393196 CCDC180Q9P1Z9 1646 aa40.14■■■■■ 4.02
NME1-203ENST00000393196 ABCC9O60706 1549 aa39.14■■■■□ 3.86
NME1-203ENST00000393196 NACADO15069 1562 aa37.79■■■■□ 3.64
NME1-203ENST00000393196 RB1CC1Q8TDY2 1594 aa37.79■■■■□ 3.64
NME1-203ENST00000393196 DCAF8L2P0C7V8 631 aa37.69■■■■□ 3.62
NME1-203ENST00000393196 ZCCHC6Q5VYS8 1495 aaKnown RBP37.66■■■■□ 3.62
NME1-203ENST00000393196 MYO15BQ96JP2 1530 aa37.66■■■■□ 3.62
NME1-203ENST00000393196 DCAF1Q9Y4B6 1507 aa37.48■■■■□ 3.59
NME1-203ENST00000393196 UNC13AQ9UPW8 1703 aa36.65■■■■□ 3.46
NME1-203ENST00000393196 PABPN1Q86U42 306 aaKnown RBP eCLIP36.58■■■■□ 3.45
NME1-203ENST00000393196 SCRIBQ14160 1630 aa36.54■■■■□ 3.44
NME1-203ENST00000393196 BICRAQ9NZM4 1560 aa36.5■■■■□ 3.43
NME1-203ENST00000393196 SHROOM4Q9ULL8 1493 aa36.42■■■■□ 3.42
NME1-203ENST00000393196 DNAJC5BQ9UF47 199 aa35.78■■■■□ 3.32
NME1-203ENST00000393196 EIF4G1Q04637 1599 aaKnown RBP35.6■■■■□ 3.29
NME1-203ENST00000393196 CC2D2AQ9P2K1 1620 aa35.39■■■■□ 3.26
NME1-203ENST00000393196 CECR2Q9BXF3 1484 aa35.23■■■■□ 3.23
NME1-203ENST00000393196 BAZ1AQ9NRL2 1556 aaPredicted RBP35.06■■■■□ 3.2
NME1-203ENST00000393196 SMARCA4P51532 1647 aa35■■■■□ 3.19
NME1-203ENST00000393196 SMARCA2P51531 1590 aa34.87■■■■□ 3.17
NME1-203ENST00000393196 NCAPD3P42695 1498 aa34.86■■■■□ 3.17
NME1-203ENST00000393196 ATAD2BQ9ULI0 1458 aa34.84■■■■□ 3.17
NME1-203ENST00000393196 MROH2BQ7Z745 1585 aa34.75■■■■□ 3.15
NME1-203ENST00000393196 PEG3Q9GZU2 1588 aa34.72■■■■□ 3.15
NME1-203ENST00000393196 HMGXB3Q12766 1538 aa34.69■■■■□ 3.14
NME1-203ENST00000393196 BAZ1BQ9UIG0 1483 aaKnown RBP34.58■■■■□ 3.13
NME1-203ENST00000393196 RSF1Q96T23 1441 aaPredicted RBP34.45■■■■□ 3.11
NME1-203ENST00000393196 WIZO95785 1651 aa34.31■■■■□ 3.08
NME1-203ENST00000393196 TOP2AP11388 1531 aaKnown RBP34.1■■■■□ 3.05
NME1-203ENST00000393196 LAMC3Q9Y6N6 1575 aa33.91■■■■□ 3.02
NME1-203ENST00000393196 CADPSQ9ULU8 1353 aa33.85■■■■□ 3.01
NME1-203ENST00000393196 ERCC6Q03468 1493 aa33.84■■■■□ 3.01
NME1-203ENST00000393196 NESP48681 1621 aa33.84■■■■□ 3.01
NME1-203ENST00000393196 PDS5BQ9NTI5 1447 aa33.76■■■□□ 2.99
NME1-203ENST00000393196 CCDC88BA6NC98 1476 aa33.66■■■□□ 2.98
NME1-203ENST00000393196 CFTRP13569 1480 aa33.65■■■□□ 2.98
NME1-203ENST00000393196 SUPT5HO00267 1087 aaKnown RBP33.6■■■□□ 2.97
NME1-203ENST00000393196 CUX2O14529 1486 aa33.49■■■□□ 2.95
NME1-203ENST00000393196 FANCD2Q9BXW9 1451 aa33.43■■■□□ 2.94
NME1-203ENST00000393196 CEP164Q9UPV0 1460 aa33.41■■■□□ 2.94
NME1-203ENST00000393196 KIF21AQ7Z4S6 1674 aa33.4■■■□□ 2.94
NME1-203ENST00000393196 THOC2Q8NI27 1593 aaKnown RBP33.34■■■□□ 2.93
NME1-203ENST00000393196 MRC2Q9UBG0 1479 aa33.34■■■□□ 2.93
NME1-203ENST00000393196 PRDM2Q13029 1718 aa33.25■■■□□ 2.91
NME1-203ENST00000393196 WDR62O43379 1518 aa33.19■■■□□ 2.9
NME1-203ENST00000393196 URB2Q14146 1524 aaKnown RBP33.02■■■□□ 2.88
NME1-203ENST00000393196 ABCC8Q09428 1581 aa33.02■■■□□ 2.88
NME1-203ENST00000393196 TOPBP1Q92547 1522 aa32.87■■■□□ 2.85
NME1-203ENST00000393196 DNMBPQ6XZF7 1577 aa32.87■■■□□ 2.85
NME1-203ENST00000393196 IFT140Q96RY7 1462 aa32.74■■■□□ 2.83
NME1-203ENST00000393196 CUX1P39880 1505 aa32.61■■■□□ 2.81
NME1-203ENST00000393196 POLA1P09884 1462 aaPredicted RBP32.61■■■□□ 2.81
NME1-203ENST00000393196 FGD5Q6ZNL6 1462 aa32.53■■■□□ 2.8
NME1-203ENST00000393196 WRNQ14191 1432 aaPredicted RBP eCLIP32.52■■■□□ 2.8
NME1-203ENST00000393196 SOGA1O94964 1423 aa32.51■■■□□ 2.79
NME1-203ENST00000393196 TARBP1Q13395 1621 aaKnown RBP32.46■■■□□ 2.79
NME1-203ENST00000393196 ZNF608Q9ULD9 1512 aaPredicted RBP32.43■■■□□ 2.78
NME1-203ENST00000393196 RAD54L2Q9Y4B4 1467 aa32.4■■■□□ 2.78
NME1-203ENST00000393196 TOP2BQ02880 1626 aa32.39■■■□□ 2.78
NME1-203ENST00000393196 WDR97A6NE52 1622 aa32.37■■■□□ 2.77
NME1-203ENST00000393196 BIVM-ERCC5R4GMW8 1640 aa32.35■■■□□ 2.77
NME1-203ENST00000393196 EIF4G3O43432 1585 aaKnown RBP32.33■■■□□ 2.77
NME1-203ENST00000393196 DNAJC5Q9H3Z4 198 aa32.33■■■□□ 2.77
NME1-203ENST00000393196 SYNJ1O43426 1573 aa32.31■■■□□ 2.76
NME1-203ENST00000393196 AQRO60306 1485 aaKnown RBP eCLIP32.29■■■□□ 2.768e-7■■■□□ 16.8
NME1-203ENST00000393196 ABCA10Q8WWZ4 1543 aa32.27■■■□□ 2.76
NME1-203ENST00000393196 TDRD9Q8NDG6 1382 aaKnown RBP32.27■■■□□ 2.76
NME1-203ENST00000393196 GRIN2BQ13224 1484 aa32.16■■■□□ 2.74
NME1-203ENST00000393196 GAPVD1Q14C86 1478 aa32.13■■■□□ 2.73
NME1-203ENST00000393196 OSCARQ8IYS5 282 aa32.12■■■□□ 2.73
NME1-203ENST00000393196 MAGI1Q96QZ7 1491 aaPredicted RBP32.08■■■□□ 2.73
NME1-203ENST00000393196 ABCA5Q8WWZ7 1642 aa32.06■■■□□ 2.72
NME1-203ENST00000393196 SNAPC4Q5SXM2 1469 aa32.03■■■□□ 2.72
NME1-203ENST00000393196 FBLN2P98095 1184 aa31.95■■■□□ 2.71
NME1-203ENST00000393196 SYNJ2O15056 1496 aa31.93■■■□□ 2.7
NME1-203ENST00000393196 CHMP7Q8WUX9 453 aaPredicted RBP31.93■■■□□ 2.7
NME1-203ENST00000393196 PBRM1Q86U86 1689 aa31.92■■■□□ 2.7
NME1-203ENST00000393196 ERICH3Q5RHP9 1530 aa31.9■■■□□ 2.7
NME1-203ENST00000393196 KIF27Q86VH2 1401 aa31.89■■■□□ 2.7
NME1-203ENST00000393196 TRIM41Q8WV44 630 aa31.82■■■□□ 2.68
NME1-203ENST00000393196 CHD1O14646 1710 aa31.82■■■□□ 2.68
NME1-203ENST00000393196 AEBP2Q6ZN18 517 aaPredicted RBP31.81■■■□□ 2.68
NME1-203ENST00000393196 FHAD1B1AJZ9 1412 aa31.81■■■□□ 2.68
NME1-203ENST00000393196 ADAMTS12P58397 1594 aa31.77■■■□□ 2.68
NME1-203ENST00000393196 GRIN2AQ12879 1464 aa31.7■■■□□ 2.66
NME1-203ENST00000393196 IGF1RP08069 1367 aa31.68■■■□□ 2.66
NME1-203ENST00000393196 CUL7Q14999 1698 aa31.6■■■□□ 2.65
NME1-203ENST00000393196 CLASP1Q7Z460 1538 aa31.59■■■□□ 2.65
NME1-203ENST00000393196 NUP160Q12769 1436 aa31.57■■■□□ 2.64
NME1-203ENST00000393196 CARMIL1Q5VZK9 1371 aa31.52■■■□□ 2.64
NME1-203ENST00000393196 ARHGEF11O15085 1522 aa31.5■■■□□ 2.63
NME1-203ENST00000393196 CEP170Q5SW79 1584 aa31.45■■■□□ 2.63
NME1-203ENST00000393196 RIMBP3CA6NJZ7 1639 aa31.43■■■□□ 2.62
NME1-203ENST00000393196 RIMBP3BA6NNM3 1639 aa31.43■■■□□ 2.62
NME1-203ENST00000393196 RIMBP3Q9UFD9 1639 aa31.43■■■□□ 2.62
NME1-203ENST00000393196 CHIC1Q5VXU3 224 aa31.4■■■□□ 2.62
NME1-203ENST00000393196 RUSC2Q8N2Y8 1516 aa31.39■■■□□ 2.62
NME1-203ENST00000393196 EEA1Q15075 1411 aa31.39■■■□□ 2.62
NME1-203ENST00000393196 RAPGEF2Q9Y4G8 1499 aa31.34■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms