RNA–Protein interactions for RNA: ENST00000390457.2

TRAV27-201, Transcript of T cell receptor alpha variable 27, humanhuman

APPRIS P1 BASIC

Gene TRAV27, Length 425 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV27-201ENST00000390457 NISCHQ9Y2I1 1504 aa17.93■□□□□ 0.46
TRAV27-201ENST00000390457 AEBP2Q6ZN18 517 aaPredicted RBP17.87■□□□□ 0.45
TRAV27-201ENST00000390457 CHIC1Q5VXU3 224 aa16.8■□□□□ 0.28
TRAV27-201ENST00000390457 ABCC9O60706 1549 aa16.21■□□□□ 0.19
TRAV27-201ENST00000390457 CCDC180Q9P1Z9 1646 aa16.09■□□□□ 0.17
TRAV27-201ENST00000390457 SENP3Q9H4L4 574 aaPredicted RBP15.44■□□□□ 0.06
TRAV27-201ENST00000390457 DNAJC5BQ9UF47 199 aa15.4■□□□□ 0.06
TRAV27-201ENST00000390457 RB1CC1Q8TDY2 1594 aa15.37■□□□□ 0.05
TRAV27-201ENST00000390457 NACADO15069 1562 aa15.27■□□□□ 0.03
TRAV27-201ENST00000390457 PHF23Q9BUL5 403 aaPredicted RBP15.11■□□□□ 0.01
TRAV27-201ENST00000390457 DCAF8L2P0C7V8 631 aa15.08■□□□□ 0
TRAV27-201ENST00000390457 PABPN1Q86U42 306 aaKnown RBP eCLIP15.08■□□□□ 0
TRAV27-201ENST00000390457 MYO15BQ96JP2 1530 aa15.07■□□□□ 0
TRAV27-201ENST00000390457 UNC13AQ9UPW8 1703 aa15.03■□□□□ -0
TRAV27-201ENST00000390457 BICRAQ9NZM4 1560 aa14.99□□□□□ -0.01
TRAV27-201ENST00000390457 ZCCHC6Q5VYS8 1495 aaKnown RBP14.82□□□□□ -0.04
TRAV27-201ENST00000390457 DCAF1Q9Y4B6 1507 aa14.82□□□□□ -0.04
TRAV27-201ENST00000390457 SHROOM4Q9ULL8 1493 aa14.76□□□□□ -0.05
TRAV27-201ENST00000390457 CC2D2AQ9P2K1 1620 aa14.65□□□□□ -0.06
TRAV27-201ENST00000390457 CECR2Q9BXF3 1484 aa14.63□□□□□ -0.07
TRAV27-201ENST00000390457 SCRIBQ14160 1630 aa14.63□□□□□ -0.07
TRAV27-201ENST00000390457 EIF4G1Q04637 1599 aaKnown RBP14.6□□□□□ -0.07
TRAV27-201ENST00000390457 FOXD1Q16676 465 aa14.39□□□□□ -0.11
TRAV27-201ENST00000390457 POTEDQ86YR6 584 aa14.34□□□□□ -0.11
TRAV27-201ENST00000390457 DNAJC5Q9H3Z4 198 aa14.21□□□□□ -0.13
TRAV27-201ENST00000390457 NCAPD3P42695 1498 aa14.13□□□□□ -0.15
TRAV27-201ENST00000390457 ATAD2BQ9ULI0 1458 aa14.06□□□□□ -0.16
TRAV27-201ENST00000390457 CUX2O14529 1486 aa14.04□□□□□ -0.16
TRAV27-201ENST00000390457 HMGXB3Q12766 1538 aa13.99□□□□□ -0.17
TRAV27-201ENST00000390457 SMARCA4P51532 1647 aa13.98□□□□□ -0.17
TRAV27-201ENST00000390457 SMARCA2P51531 1590 aa13.97□□□□□ -0.17
TRAV27-201ENST00000390457 ERCC6Q03468 1493 aa13.96□□□□□ -0.17
TRAV27-201ENST00000390457 NESP48681 1621 aa13.91□□□□□ -0.18
TRAV27-201ENST00000390457 PEG3Q9GZU2 1588 aa13.89□□□□□ -0.19
TRAV27-201ENST00000390457 BAZ1AQ9NRL2 1556 aaPredicted RBP13.89□□□□□ -0.19
TRAV27-201ENST00000390457 BAZ1BQ9UIG0 1483 aaKnown RBP13.87□□□□□ -0.19
TRAV27-201ENST00000390457 MROH2BQ7Z745 1585 aa13.8□□□□□ -0.2
TRAV27-201ENST00000390457 THOC2Q8NI27 1593 aaKnown RBP13.79□□□□□ -0.2
TRAV27-201ENST00000390457 LAMC3Q9Y6N6 1575 aa13.79□□□□□ -0.2
TRAV27-201ENST00000390457 MSH5O43196 834 aa13.77□□□□□ -0.21
TRAV27-201ENST00000390457 PDS5BQ9NTI5 1447 aa13.71□□□□□ -0.22
TRAV27-201ENST00000390457 KIF21AQ7Z4S6 1674 aa13.69□□□□□ -0.22
TRAV27-201ENST00000390457 CADPSQ9ULU8 1353 aa13.68□□□□□ -0.22
TRAV27-201ENST00000390457 MRC2Q9UBG0 1479 aa13.6□□□□□ -0.23
TRAV27-201ENST00000390457 WIZO95785 1651 aa13.59□□□□□ -0.23
TRAV27-201ENST00000390457 WDR62O43379 1518 aa13.58□□□□□ -0.24
TRAV27-201ENST00000390457 CFTRP13569 1480 aa13.51□□□□□ -0.25
TRAV27-201ENST00000390457 FANCD2Q9BXW9 1451 aa13.5□□□□□ -0.25
TRAV27-201ENST00000390457 CEP164Q9UPV0 1460 aa13.5□□□□□ -0.25
TRAV27-201ENST00000390457 RSF1Q96T23 1441 aaPredicted RBP13.49□□□□□ -0.25
TRAV27-201ENST00000390457 TRIM41Q8WV44 630 aa13.44□□□□□ -0.26
TRAV27-201ENST00000390457 TOP2AP11388 1531 aaKnown RBP13.43□□□□□ -0.26
TRAV27-201ENST00000390457 URB2Q14146 1524 aaKnown RBP13.42□□□□□ -0.26
TRAV27-201ENST00000390457 OSCARQ8IYS5 282 aa13.37□□□□□ -0.27
TRAV27-201ENST00000390457 PIAS4Q8N2W9 510 aaPredicted RBP13.32□□□□□ -0.28
TRAV27-201ENST00000390457 CCDC88BA6NC98 1476 aa13.3□□□□□ -0.28
TRAV27-201ENST00000390457 PRDM2Q13029 1718 aa13.28□□□□□ -0.28
TRAV27-201ENST00000390457 ZNF608Q9ULD9 1512 aaPredicted RBP13.27□□□□□ -0.29
TRAV27-201ENST00000390457 IFT140Q96RY7 1462 aa13.26□□□□□ -0.29
TRAV27-201ENST00000390457 TOPBP1Q92547 1522 aa13.23□□□□□ -0.29
TRAV27-201ENST00000390457 RIMBP3CA6NJZ7 1639 aa13.2□□□□□ -0.3
TRAV27-201ENST00000390457 RIMBP3BA6NNM3 1639 aa13.2□□□□□ -0.3
TRAV27-201ENST00000390457 RIMBP3Q9UFD9 1639 aa13.2□□□□□ -0.3
TRAV27-201ENST00000390457 ABCC8Q09428 1581 aa13.19□□□□□ -0.3
TRAV27-201ENST00000390457 DNMBPQ6XZF7 1577 aa13.16□□□□□ -0.3
TRAV27-201ENST00000390457 ARHGEF11O15085 1522 aa13.16□□□□□ -0.3
TRAV27-201ENST00000390457 EIF4G3O43432 1585 aaKnown RBP13.15□□□□□ -0.3
TRAV27-201ENST00000390457 TARBP1Q13395 1621 aaKnown RBP13.14□□□□□ -0.31
TRAV27-201ENST00000390457 AQRO60306 1485 aaKnown RBP eCLIP13.12□□□□□ -0.31
TRAV27-201ENST00000390457 POLA1P09884 1462 aaPredicted RBP13.1□□□□□ -0.31
TRAV27-201ENST00000390457 CYB5RLQ6IPT4 315 aa13.06□□□□□ -0.32
TRAV27-201ENST00000390457 CHD1O14646 1710 aa13.05□□□□□ -0.32
TRAV27-201ENST00000390457 RAD54L2Q9Y4B4 1467 aa13.04□□□□□ -0.32
TRAV27-201ENST00000390457 ARAP1Q96P48 1450 aa13.04□□□□□ -0.32
TRAV27-201ENST00000390457 SOGA1O94964 1423 aa13.03□□□□□ -0.32
TRAV27-201ENST00000390457 TDRD9Q8NDG6 1382 aaKnown RBP13.02□□□□□ -0.33
TRAV27-201ENST00000390457 FBLN2P98095 1184 aa12.99□□□□□ -0.33
TRAV27-201ENST00000390457 FGD5Q6ZNL6 1462 aa12.98□□□□□ -0.33
TRAV27-201ENST00000390457 PPP6R1Q9UPN7 881 aa12.98□□□□□ -0.33
TRAV27-201ENST00000390457 WDR97A6NE52 1622 aa12.98□□□□□ -0.33
TRAV27-201ENST00000390457 CUX1P39880 1505 aa12.97□□□□□ -0.33
TRAV27-201ENST00000390457 CLASP1Q7Z460 1538 aa12.96□□□□□ -0.33
TRAV27-201ENST00000390457 SNAPC4Q5SXM2 1469 aa12.96□□□□□ -0.34
TRAV27-201ENST00000390457 PLPPR3Q6T4P5 718 aa12.95□□□□□ -0.34
TRAV27-201ENST00000390457 MAGI1Q96QZ7 1491 aaPredicted RBP12.94□□□□□ -0.34
TRAV27-201ENST00000390457 GRIN2BQ13224 1484 aa12.92□□□□□ -0.34
TRAV27-201ENST00000390457 ADRA2BP18089 450 aa12.91□□□□□ -0.34
TRAV27-201ENST00000390457 CHMP7Q8WUX9 453 aaPredicted RBP12.91□□□□□ -0.34
TRAV27-201ENST00000390457 TRHP20396 242 aaPredicted RBP12.9□□□□□ -0.34
TRAV27-201ENST00000390457 SYNJ2O15056 1496 aa12.9□□□□□ -0.34
TRAV27-201ENST00000390457 SYNJ1O43426 1573 aa12.89□□□□□ -0.35
TRAV27-201ENST00000390457 GAPVD1Q14C86 1478 aa12.86□□□□□ -0.35
TRAV27-201ENST00000390457 ABCA10Q8WWZ4 1543 aa12.86□□□□□ -0.35
TRAV27-201ENST00000390457 ABCA5Q8WWZ7 1642 aa12.83□□□□□ -0.36
TRAV27-201ENST00000390457 PBRM1Q86U86 1689 aa12.82□□□□□ -0.36
TRAV27-201ENST00000390457 NUP160Q12769 1436 aa12.76□□□□□ -0.37
TRAV27-201ENST00000390457 GRIN2AQ12879 1464 aa12.76□□□□□ -0.37
TRAV27-201ENST00000390457 WRNQ14191 1432 aaPredicted RBP eCLIP12.75□□□□□ -0.37
TRAV27-201ENST00000390457 ERCC6L2Q5T890 1561 aa12.75□□□□□ -0.37
TRAV27-201ENST00000390457 SUPT5HO00267 1087 aaKnown RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms