RNA–Protein interactions for RNA: ENST00000381208.9

RPAIN-202, Transcript of RPA interacting protein, humanhuman

TSL 1 (best) BASIC

Gene RPAIN, Length 1,394 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-202ENST00000381208 NISCHQ9Y2I1 1504 aa32.17■■■□□ 2.74
RPAIN-202ENST00000381208 AEBP2Q6ZN18 517 aaPredicted RBP31.46■■■□□ 2.63
RPAIN-202ENST00000381208 CHIC1Q5VXU3 224 aa29.56■■■□□ 2.32
RPAIN-202ENST00000381208 CCDC180Q9P1Z9 1646 aa28.8■■■□□ 2.2
RPAIN-202ENST00000381208 ABCC9O60706 1549 aa28.61■■■□□ 2.17
RPAIN-202ENST00000381208 RB1CC1Q8TDY2 1594 aa27.38■■□□□ 1.97
RPAIN-202ENST00000381208 NACADO15069 1562 aa27.26■■□□□ 1.95
RPAIN-202ENST00000381208 SENP3Q9H4L4 574 aaPredicted RBP27.16■■□□□ 1.94
RPAIN-202ENST00000381208 DCAF8L2P0C7V8 631 aa27.09■■□□□ 1.93
RPAIN-202ENST00000381208 MYO15BQ96JP2 1530 aa26.99■■□□□ 1.91
RPAIN-202ENST00000381208 ZCCHC6Q5VYS8 1495 aaKnown RBP26.7■■□□□ 1.86
RPAIN-202ENST00000381208 PABPN1Q86U42 306 aaKnown RBP eCLIP26.67■■□□□ 1.86
RPAIN-202ENST00000381208 DNAJC5BQ9UF47 199 aa26.67■■□□□ 1.86
RPAIN-202ENST00000381208 DCAF1Q9Y4B6 1507 aa26.66■■□□□ 1.86
RPAIN-202ENST00000381208 PHF23Q9BUL5 403 aaPredicted RBP26.61■■□□□ 1.85
RPAIN-202ENST00000381208 UNC13AQ9UPW8 1703 aa26.58■■□□□ 1.85
RPAIN-202ENST00000381208 BICRAQ9NZM4 1560 aa26.48■■□□□ 1.83
RPAIN-202ENST00000381208 SHROOM4Q9ULL8 1493 aa26.34■■□□□ 1.81
RPAIN-202ENST00000381208 SCRIBQ14160 1630 aa26.17■■□□□ 1.78
RPAIN-202ENST00000381208 EIF4G1Q04637 1599 aaKnown RBP25.86■■□□□ 1.73
RPAIN-202ENST00000381208 CC2D2AQ9P2K1 1620 aa25.85■■□□□ 1.73
RPAIN-202ENST00000381208 CECR2Q9BXF3 1484 aa25.81■■□□□ 1.72
RPAIN-202ENST00000381208 POTEDQ86YR6 584 aa25.36■■□□□ 1.65
RPAIN-202ENST00000381208 FOXD1Q16676 465 aa25.34■■□□□ 1.65
RPAIN-202ENST00000381208 NCAPD3P42695 1498 aa25.16■■□□□ 1.62
RPAIN-202ENST00000381208 ATAD2BQ9ULI0 1458 aa25.06■■□□□ 1.6
RPAIN-202ENST00000381208 SMARCA2P51531 1590 aa25.04■■□□□ 1.6
RPAIN-202ENST00000381208 SMARCA4P51532 1647 aa25.04■■□□□ 1.6
RPAIN-202ENST00000381208 BAZ1AQ9NRL2 1556 aaPredicted RBP25■■□□□ 1.59
RPAIN-202ENST00000381208 HMGXB3Q12766 1538 aa24.96■■□□□ 1.59
RPAIN-202ENST00000381208 PEG3Q9GZU2 1588 aa24.85■■□□□ 1.57
RPAIN-202ENST00000381208 BAZ1BQ9UIG0 1483 aaKnown RBP24.84■■□□□ 1.57
RPAIN-202ENST00000381208 ERCC6Q03468 1493 aa24.77■■□□□ 1.56
RPAIN-202ENST00000381208 MROH2BQ7Z745 1585 aa24.73■■□□□ 1.55
RPAIN-202ENST00000381208 CUX2O14529 1486 aa24.71■■□□□ 1.55
RPAIN-202ENST00000381208 NESP48681 1621 aa24.58■■□□□ 1.53
RPAIN-202ENST00000381208 LAMC3Q9Y6N6 1575 aa24.55■■□□□ 1.52
RPAIN-202ENST00000381208 DNAJC5Q9H3Z4 198 aa24.51■■□□□ 1.51
RPAIN-202ENST00000381208 PDS5BQ9NTI5 1447 aa24.46■■□□□ 1.51
RPAIN-202ENST00000381208 CADPSQ9ULU8 1353 aa24.41■■□□□ 1.5
RPAIN-202ENST00000381208 WIZO95785 1651 aa24.41■■□□□ 1.5
RPAIN-202ENST00000381208 RSF1Q96T23 1441 aaPredicted RBP24.33■■□□□ 1.49
RPAIN-202ENST00000381208 THOC2Q8NI27 1593 aaKnown RBP24.32■■□□□ 1.48
RPAIN-202ENST00000381208 MSH5O43196 834 aa24.25■■□□□ 1.47
RPAIN-202ENST00000381208 KIF21AQ7Z4S6 1674 aa24.24■■□□□ 1.47
RPAIN-202ENST00000381208 TOP2AP11388 1531 aaKnown RBP24.2■■□□□ 1.47
RPAIN-202ENST00000381208 MRC2Q9UBG0 1479 aa24.17■■□□□ 1.46
RPAIN-202ENST00000381208 CFTRP13569 1480 aa24.14■■□□□ 1.46
RPAIN-202ENST00000381208 CEP164Q9UPV0 1460 aa24.11■■□□□ 1.45
RPAIN-202ENST00000381208 WDR62O43379 1518 aa24.1■■□□□ 1.45
RPAIN-202ENST00000381208 FANCD2Q9BXW9 1451 aa24.09■■□□□ 1.45
RPAIN-202ENST00000381208 CCDC88BA6NC98 1476 aa23.91■■□□□ 1.42
RPAIN-202ENST00000381208 URB2Q14146 1524 aaKnown RBP23.83■■□□□ 1.41
RPAIN-202ENST00000381208 PRDM2Q13029 1718 aa23.81■■□□□ 1.4
RPAIN-202ENST00000381208 ABCC8Q09428 1581 aa23.71■■□□□ 1.39
RPAIN-202ENST00000381208 IFT140Q96RY7 1462 aa23.65■■□□□ 1.38
RPAIN-202ENST00000381208 TOPBP1Q92547 1522 aa23.63■■□□□ 1.37
RPAIN-202ENST00000381208 OSCARQ8IYS5 282 aa23.63■■□□□ 1.37
RPAIN-202ENST00000381208 DNMBPQ6XZF7 1577 aa23.56■■□□□ 1.36
RPAIN-202ENST00000381208 ZNF608Q9ULD9 1512 aaPredicted RBP23.49■■□□□ 1.35
RPAIN-202ENST00000381208 PIAS4Q8N2W9 510 aaPredicted RBP23.49■■□□□ 1.35
RPAIN-202ENST00000381208 TRIM41Q8WV44 630 aa23.42■■□□□ 1.34
RPAIN-202ENST00000381208 POLA1P09884 1462 aaPredicted RBP23.41■■□□□ 1.34
RPAIN-202ENST00000381208 TARBP1Q13395 1621 aaKnown RBP23.37■■□□□ 1.33
RPAIN-202ENST00000381208 EIF4G3O43432 1585 aaKnown RBP23.37■■□□□ 1.33
RPAIN-202ENST00000381208 SUPT5HO00267 1087 aaKnown RBP23.34■■□□□ 1.33
RPAIN-202ENST00000381208 SOGA1O94964 1423 aa23.33■■□□□ 1.33
RPAIN-202ENST00000381208 AQRO60306 1485 aaKnown RBP eCLIP23.32■■□□□ 1.323e-7■■■□□ 18.2
RPAIN-202ENST00000381208 WDR97A6NE52 1622 aa23.27■■□□□ 1.32
RPAIN-202ENST00000381208 RAD54L2Q9Y4B4 1467 aa23.27■■□□□ 1.32
RPAIN-202ENST00000381208 FGD5Q6ZNL6 1462 aa23.26■■□□□ 1.31
RPAIN-202ENST00000381208 CUX1P39880 1505 aa23.24■■□□□ 1.31
RPAIN-202ENST00000381208 TDRD9Q8NDG6 1382 aaKnown RBP23.22■■□□□ 1.31
RPAIN-202ENST00000381208 FBLN2P98095 1184 aa23.18■■□□□ 1.3
RPAIN-202ENST00000381208 RIMBP3CA6NJZ7 1639 aa23.16■■□□□ 1.3
RPAIN-202ENST00000381208 RIMBP3BA6NNM3 1639 aa23.16■■□□□ 1.3
RPAIN-202ENST00000381208 RIMBP3Q9UFD9 1639 aa23.16■■□□□ 1.3
RPAIN-202ENST00000381208 ARHGEF11O15085 1522 aa23.15■■□□□ 1.3
RPAIN-202ENST00000381208 CHD1O14646 1710 aa23.12■■□□□ 1.29
RPAIN-202ENST00000381208 GRIN2BQ13224 1484 aa23.12■■□□□ 1.29
RPAIN-202ENST00000381208 MAGI1Q96QZ7 1491 aaPredicted RBP23.12■■□□□ 1.29
RPAIN-202ENST00000381208 SNAPC4Q5SXM2 1469 aa23.11■■□□□ 1.29
RPAIN-202ENST00000381208 CHMP7Q8WUX9 453 aaPredicted RBP23.1■■□□□ 1.29
RPAIN-202ENST00000381208 ABCA10Q8WWZ4 1543 aa23.06■■□□□ 1.28
RPAIN-202ENST00000381208 GAPVD1Q14C86 1478 aa23.04■■□□□ 1.28
RPAIN-202ENST00000381208 SYNJ2O15056 1496 aa23.03■■□□□ 1.28
RPAIN-202ENST00000381208 WRNQ14191 1432 aaPredicted RBP eCLIP23.02■■□□□ 1.28
RPAIN-202ENST00000381208 CYB5RLQ6IPT4 315 aa23■■□□□ 1.27
RPAIN-202ENST00000381208 SYNJ1O43426 1573 aa22.99■■□□□ 1.27
RPAIN-202ENST00000381208 CLASP1Q7Z460 1538 aa22.94■■□□□ 1.26
RPAIN-202ENST00000381208 TOP2BQ02880 1626 aa22.94■■□□□ 1.26
RPAIN-202ENST00000381208 ABCA5Q8WWZ7 1642 aa22.94■■□□□ 1.26
RPAIN-202ENST00000381208 PBRM1Q86U86 1689 aa22.92■■□□□ 1.26
RPAIN-202ENST00000381208 BIVM-ERCC5R4GMW8 1640 aa22.92■■□□□ 1.26
RPAIN-202ENST00000381208 ARAP1Q96P48 1450 aa22.92■■□□□ 1.26
RPAIN-202ENST00000381208 PPP6R1Q9UPN7 881 aa22.85■■□□□ 1.25
RPAIN-202ENST00000381208 GRIN2AQ12879 1464 aa22.8■■□□□ 1.24
RPAIN-202ENST00000381208 FHAD1B1AJZ9 1412 aa22.79■■□□□ 1.24
RPAIN-202ENST00000381208 ERICH3Q5RHP9 1530 aa22.78■■□□□ 1.24
RPAIN-202ENST00000381208 ADAMTS12P58397 1594 aa22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms