RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 PELP1Q8IZL8 1130 aaKnown RBP14.92□□□□□ -0.02
LIG3-202ENST00000378526 MYT1Q01538 1121 aa14.89□□□□□ -0.03
LIG3-202ENST00000378526 CCER1Q8TC90 406 aaPredicted RBP14.14□□□□□ -0.15
LIG3-202ENST00000378526 ERICH6Q7L0X2 663 aa14.12□□□□□ -0.15
LIG3-202ENST00000378526 TTBK1Q5TCY1 1321 aaPredicted RBP13.99□□□□□ -0.17
LIG3-202ENST00000378526 YTHDC1Q96MU7 727 aaKnown RBP13.93□□□□□ -0.18
LIG3-202ENST00000378526 CENPBP07199 599 aaPredicted RBP13.77□□□□□ -0.21
LIG3-202ENST00000378526 NEFLP07196 543 aa13.39□□□□□ -0.27
LIG3-202ENST00000378526 ZEB1P37275 1124 aaPredicted RBP13.36□□□□□ -0.27
LIG3-202ENST00000378526 DAXXQ9UER7 740 aaPredicted RBP13.27□□□□□ -0.29
LIG3-202ENST00000378526 RTL5Q5HYW3 569 aaPredicted RBP13.11□□□□□ -0.31
LIG3-202ENST00000378526 GLIPR1L2Q4G1C9 344 aa13.1□□□□□ -0.31
LIG3-202ENST00000378526 APLP2Q06481 763 aa13.07□□□□□ -0.32
LIG3-202ENST00000378526 DCAF8L2P0C7V8 631 aa12.98□□□□□ -0.33
LIG3-202ENST00000378526 PCGF6Q9BYE7 350 aa12.88□□□□□ -0.35
LIG3-202ENST00000378526 ZNF316A6NFI3 1004 aaPredicted RBP12.88□□□□□ -0.35
LIG3-202ENST00000378526 SUPT5HO00267 1087 aaKnown RBP12.82□□□□□ -0.36
LIG3-202ENST00000378526 FAM9AQ8IZU1 332 aaPredicted RBP12.75□□□□□ -0.37
LIG3-202ENST00000378526 RANGAP1P46060 587 aaPredicted RBP12.73□□□□□ -0.37
LIG3-202ENST00000378526 CLSPNQ9HAW4 1339 aa12.72□□□□□ -0.37
LIG3-202ENST00000378526 MYT1LQ9UL68 1186 aa12.7□□□□□ -0.38
LIG3-202ENST00000378526 EIF5BO60841 1220 aaKnown RBP12.64□□□□□ -0.39
LIG3-202ENST00000378526 ANP32BQ92688 251 aaKnown RBP12.5□□□□□ -0.41
LIG3-202ENST00000378526 EHMT2Q96KQ7 1210 aa12.5□□□□□ -0.41
LIG3-202ENST00000378526 TNNT2P45379 298 aaPredicted RBP12.45□□□□□ -0.42
LIG3-202ENST00000378526 CDK11AQ9UQ88 783 aaPredicted RBP12.45□□□□□ -0.42
LIG3-202ENST00000378526 HRCP23327 699 aa12.42□□□□□ -0.42
LIG3-202ENST00000378526 ANP32AP39687 249 aaKnown RBP12.36□□□□□ -0.43
LIG3-202ENST00000378526 TRIM26Q12899 539 aaPredicted RBP12.32□□□□□ -0.44
LIG3-202ENST00000378526 NCLP19338 710 aaKnown RBP12.26□□□□□ -0.45
LIG3-202ENST00000378526 TRIM44Q96DX7 344 aaPredicted RBP12.25□□□□□ -0.45
LIG3-202ENST00000378526 CDK11BP21127 795 aaKnown RBP12.25□□□□□ -0.45
LIG3-202ENST00000378526 GTF3C3Q9Y5Q9 886 aa12.23□□□□□ -0.45
LIG3-202ENST00000378526 DIEXFQ68CQ4 756 aaKnown RBP12.23□□□□□ -0.45
LIG3-202ENST00000378526 ZBTB47Q9UFB7 747 aaPredicted RBP12.19□□□□□ -0.46
LIG3-202ENST00000378526 SHROOM4Q9ULL8 1493 aa12.13□□□□□ -0.47
LIG3-202ENST00000378526 POLR3GLQ9BT43 218 aa12.1□□□□□ -0.47
LIG3-202ENST00000378526 ANP32EQ9BTT0 268 aa12.06□□□□□ -0.48
LIG3-202ENST00000378526 UPF2Q9HAU5 1272 aaKnown RBP12.03□□□□□ -0.48
LIG3-202ENST00000378526 HSP90AA1P07900 732 aaKnown RBP12.02□□□□□ -0.49
LIG3-202ENST00000378526 ZNF326Q5BKZ1 582 aaKnown RBP12.01□□□□□ -0.49
LIG3-202ENST00000378526 ERICH6BQ5W0A0 696 aa12□□□□□ -0.49
LIG3-202ENST00000378526 ACIN1Q9UKV3 1341 aaKnown RBP12□□□□□ -0.49
LIG3-202ENST00000378526 ATP1B4Q9UN42 357 aaPredicted RBP12□□□□□ -0.49
LIG3-202ENST00000378526 TRIM41Q8WV44 630 aa12□□□□□ -0.49
LIG3-202ENST00000378526 BCANQ96GW7 911 aa11.98□□□□□ -0.49
LIG3-202ENST00000378526 UBTFP17480 764 aaKnown RBP11.97□□□□□ -0.49
LIG3-202ENST00000378526 NEFMP07197 916 aa11.93□□□□□ -0.5
LIG3-202ENST00000378526 ANP32CO43423 234 aa11.93□□□□□ -0.5
LIG3-202ENST00000378526 NBR1Q14596 966 aa11.9□□□□□ -0.5
LIG3-202ENST00000378526 CANXP27824 592 aaKnown RBP11.9□□□□□ -0.51
LIG3-202ENST00000378526 NPM2Q86SE8 214 aaKnown RBP11.88□□□□□ -0.51
LIG3-202ENST00000378526 PTMSP20962 102 aa11.86□□□□□ -0.51
LIG3-202ENST00000378526 NAP1L5Q96NT1 182 aaPredicted RBP11.84□□□□□ -0.51
LIG3-202ENST00000378526 BCL11AQ9H165 835 aa11.83□□□□□ -0.52
LIG3-202ENST00000378526 CALRP27797 417 aaKnown RBP11.83□□□□□ -0.52
LIG3-202ENST00000378526 DDRGK1Q96HY6 314 aa11.82□□□□□ -0.52
LIG3-202ENST00000378526 SLC24A1O60721 1099 aa11.8□□□□□ -0.52
LIG3-202ENST00000378526 SLC4A1APQ9BWU0 796 aaKnown RBP11.79□□□□□ -0.52
LIG3-202ENST00000378526 DNTTIP2Q5QJE6 756 aaKnown RBP11.78□□□□□ -0.52
LIG3-202ENST00000378526 GOLGA6L22H0YM25 854 aa11.76□□□□□ -0.53
LIG3-202ENST00000378526 BECN1Q14457 450 aa11.76□□□□□ -0.53
LIG3-202ENST00000378526 PPARGC1BQ86YN6 1023 aaKnown RBP11.76□□□□□ -0.53
LIG3-202ENST00000378526 TNNT3P45378 269 aaPredicted RBP11.74□□□□□ -0.53
LIG3-202ENST00000378526 CNGB1Q14028 1251 aaPredicted RBP11.74□□□□□ -0.53
LIG3-202ENST00000378526 CHAF1AQ13111 956 aaPredicted RBP11.73□□□□□ -0.53
LIG3-202ENST00000378526 PTMAP06454 111 aaKnown RBP11.7□□□□□ -0.54
LIG3-202ENST00000378526 ARXQ96QS3 562 aa11.7□□□□□ -0.54
LIG3-202ENST00000378526 FKBP8Q14318 412 aa11.69□□□□□ -0.54
LIG3-202ENST00000378526 PPM1GO15355 546 aaPredicted RBP11.68□□□□□ -0.54
LIG3-202ENST00000378526 GOLGA6L6A8MZA4 724 aa11.66□□□□□ -0.54
LIG3-202ENST00000378526 AMER1Q5JTC6 1135 aaPredicted RBP11.65□□□□□ -0.54
LIG3-202ENST00000378526 NRDCO43847 1150 aa11.64□□□□□ -0.55
LIG3-202ENST00000378526 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.63□□□□□ -0.55
LIG3-202ENST00000378526 ITGAEP38570 1179 aa11.63□□□□□ -0.55
LIG3-202ENST00000378526 HNRNPUL2Q1KMD3 747 aaKnown RBP11.62□□□□□ -0.55
LIG3-202ENST00000378526 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.62□□□□□ -0.55
LIG3-202ENST00000378526 ZRSR1Q15695 479 aaKnown RBP11.61□□□□□ -0.55
LIG3-202ENST00000378526 CCDC136Q96JN2 1154 aa11.61□□□□□ -0.55
LIG3-202ENST00000378526 L1TD1Q5T7N2 865 aaKnown RBP11.61□□□□□ -0.55
LIG3-202ENST00000378526 MSNP26038 577 aaKnown RBP11.6□□□□□ -0.55
LIG3-202ENST00000378526 SETQ01105 290 aaPredicted RBP11.58□□□□□ -0.56
LIG3-202ENST00000378526 USP35Q9P2H5 1018 aa11.57□□□□□ -0.56
LIG3-202ENST00000378526 RTN4Q9NQC3 1192 aaKnown RBP11.54□□□□□ -0.56
LIG3-202ENST00000378526 NISCHQ9Y2I1 1504 aa11.53□□□□□ -0.56
LIG3-202ENST00000378526 A0A0U1RQG5 324 aaPredicted RBP11.51□□□□□ -0.57
LIG3-202ENST00000378526 APPP05067 770 aa11.5□□□□□ -0.57
LIG3-202ENST00000378526 RSPH6AQ9H0K4 717 aa11.5□□□□□ -0.57
LIG3-202ENST00000378526 PNNQ9H307 717 aaKnown RBP11.49□□□□□ -0.57
LIG3-202ENST00000378526 ARID4BQ4LE39 1312 aaPredicted RBP11.49□□□□□ -0.57
LIG3-202ENST00000378526 HSP90AA2PQ14568 343 aaPredicted RBP11.48□□□□□ -0.57
LIG3-202ENST00000378526 NOP58Q9Y2X3 529 aaKnown RBP11.47□□□□□ -0.57
LIG3-202ENST00000378526 SCAF1Q9H7N4 1312 aaKnown RBP11.47□□□□□ -0.57
LIG3-202ENST00000378526 GOLGA6L1Q8N7Z2 621 aa11.46□□□□□ -0.57
LIG3-202ENST00000378526 LAS1LQ9Y4W2 734 aaKnown RBP11.46□□□□□ -0.58
LIG3-202ENST00000378526 DEKP35659 375 aaKnown RBP11.46□□□□□ -0.58
LIG3-202ENST00000378526 MYH16Q9H6N6 1097 aa11.45□□□□□ -0.58
LIG3-202ENST00000378526 HNRNPUQ00839 825 aaKnown RBP eCLIP11.42□□□□□ -0.58
LIG3-202ENST00000378526 NEUROD1Q13562 356 aa11.42□□□□□ -0.58
LIG3-202ENST00000378526 CASC1Q6TDU7 716 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms