RNA–Protein interactions for RNA: ENST00000375499.7

SDHB-201, Transcript of succinate dehydrogenase complex iron sulfur subunit B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDHB, Length 1,153 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDHB-201ENST00000375499 NISCHQ9Y2I1 1504 aa38.57■■■■□ 3.76
SDHB-201ENST00000375499 CCDC180Q9P1Z9 1646 aa34.4■■■■□ 3.1
SDHB-201ENST00000375499 ABCC9O60706 1549 aa34.32■■■■□ 3.08
SDHB-201ENST00000375499 DNAJC5BQ9UF47 199 aa32.62■■■□□ 2.81
SDHB-201ENST00000375499 RB1CC1Q8TDY2 1594 aa32.6■■■□□ 2.81
SDHB-201ENST00000375499 NACADO15069 1562 aa32.36■■■□□ 2.77
SDHB-201ENST00000375499 DCAF8L2P0C7V8 631 aa32.23■■■□□ 2.75
SDHB-201ENST00000375499 ZCCHC6Q5VYS8 1495 aaKnown RBP32.1■■■□□ 2.73
SDHB-201ENST00000375499 MYO15BQ96JP2 1530 aa32.07■■■□□ 2.72
SDHB-201ENST00000375499 PABPN1Q86U42 306 aaKnown RBP eCLIP31.91■■■□□ 2.7
SDHB-201ENST00000375499 UNC13AQ9UPW8 1703 aa31.88■■■□□ 2.69
SDHB-201ENST00000375499 DCAF1Q9Y4B6 1507 aa31.85■■■□□ 2.69
SDHB-201ENST00000375499 BICRAQ9NZM4 1560 aa31.61■■■□□ 2.65
SDHB-201ENST00000375499 SCRIBQ14160 1630 aa31.43■■■□□ 2.62
SDHB-201ENST00000375499 SHROOM4Q9ULL8 1493 aa31.3■■■□□ 2.6
SDHB-201ENST00000375499 CECR2Q9BXF3 1484 aa31.03■■■□□ 2.56
SDHB-201ENST00000375499 CC2D2AQ9P2K1 1620 aa31.02■■■□□ 2.56
SDHB-201ENST00000375499 EIF4G1Q04637 1599 aaKnown RBP30.86■■■□□ 2.53
SDHB-201ENST00000375499 DNAJC5Q9H3Z4 198 aa30.43■■■□□ 2.46
SDHB-201ENST00000375499 SMARCA4P51532 1647 aa30.02■■■□□ 2.4
SDHB-201ENST00000375499 CUX2O14529 1486 aa29.9■■■□□ 2.38
SDHB-201ENST00000375499 ATAD2BQ9ULI0 1458 aa29.89■■■□□ 2.38
SDHB-201ENST00000375499 BAZ1AQ9NRL2 1556 aaPredicted RBP29.87■■■□□ 2.37
SDHB-201ENST00000375499 NCAPD3P42695 1498 aa29.87■■■□□ 2.37
SDHB-201ENST00000375499 SMARCA2P51531 1590 aa29.79■■■□□ 2.36
SDHB-201ENST00000375499 MROH2BQ7Z745 1585 aa29.77■■■□□ 2.36
SDHB-201ENST00000375499 ERCC6Q03468 1493 aa29.74■■■□□ 2.35
SDHB-201ENST00000375499 HMGXB3Q12766 1538 aa29.73■■■□□ 2.35
SDHB-201ENST00000375499 PEG3Q9GZU2 1588 aa29.7■■■□□ 2.35
SDHB-201ENST00000375499 BAZ1BQ9UIG0 1483 aaKnown RBP29.61■■■□□ 2.33
SDHB-201ENST00000375499 WIZO95785 1651 aa29.45■■■□□ 2.31
SDHB-201ENST00000375499 NESP48681 1621 aa29.33■■■□□ 2.29
SDHB-201ENST00000375499 RSF1Q96T23 1441 aaPredicted RBP29.29■■■□□ 2.28
SDHB-201ENST00000375499 LAMC3Q9Y6N6 1575 aa29.21■■■□□ 2.27
SDHB-201ENST00000375499 THOC2Q8NI27 1593 aaKnown RBP29.13■■■□□ 2.25
SDHB-201ENST00000375499 PDS5BQ9NTI5 1447 aa29.11■■■□□ 2.25
SDHB-201ENST00000375499 TOP2AP11388 1531 aaKnown RBP29.07■■■□□ 2.24
SDHB-201ENST00000375499 KIF21AQ7Z4S6 1674 aa28.99■■■□□ 2.23
SDHB-201ENST00000375499 CADPSQ9ULU8 1353 aa28.97■■■□□ 2.23
SDHB-201ENST00000375499 CFTRP13569 1480 aa28.78■■■□□ 2.2
SDHB-201ENST00000375499 MRC2Q9UBG0 1479 aa28.78■■■□□ 2.2
SDHB-201ENST00000375499 TRIM41Q8WV44 630 aa28.76■■■□□ 2.19
SDHB-201ENST00000375499 CCDC88BA6NC98 1476 aa28.72■■■□□ 2.19
SDHB-201ENST00000375499 WDR62O43379 1518 aa28.72■■■□□ 2.19
SDHB-201ENST00000375499 FANCD2Q9BXW9 1451 aa28.68■■■□□ 2.18
SDHB-201ENST00000375499 CEP164Q9UPV0 1460 aa28.65■■■□□ 2.18
SDHB-201ENST00000375499 PRDM2Q13029 1718 aa28.6■■■□□ 2.17
SDHB-201ENST00000375499 OSCARQ8IYS5 282 aa28.54■■■□□ 2.16
SDHB-201ENST00000375499 URB2Q14146 1524 aaKnown RBP28.46■■■□□ 2.15
SDHB-201ENST00000375499 SUPT5HO00267 1087 aaKnown RBP28.3■■■□□ 2.12
SDHB-201ENST00000375499 TOPBP1Q92547 1522 aa28.22■■■□□ 2.11
SDHB-201ENST00000375499 DNMBPQ6XZF7 1577 aa28.15■■■□□ 2.1
SDHB-201ENST00000375499 IFT140Q96RY7 1462 aa28.08■■■□□ 2.09
SDHB-201ENST00000375499 ABCC8Q09428 1581 aa28.07■■■□□ 2.08
SDHB-201ENST00000375499 ZNF608Q9ULD9 1512 aaPredicted RBP28.03■■■□□ 2.08
SDHB-201ENST00000375499 RIMBP3CA6NJZ7 1639 aa28.01■■■□□ 2.07
SDHB-201ENST00000375499 RIMBP3BA6NNM3 1639 aa28.01■■■□□ 2.07
SDHB-201ENST00000375499 RIMBP3Q9UFD9 1639 aa28.01■■■□□ 2.07
SDHB-201ENST00000375499 POLA1P09884 1462 aaPredicted RBP27.96■■■□□ 2.07
SDHB-201ENST00000375499 TARBP1Q13395 1621 aaKnown RBP27.96■■■□□ 2.07
SDHB-201ENST00000375499 CUX1P39880 1505 aa27.94■■■□□ 2.06
SDHB-201ENST00000375499 ARHGEF11O15085 1522 aa27.92■■■□□ 2.06
SDHB-201ENST00000375499 EIF4G3O43432 1585 aaKnown RBP27.91■■■□□ 2.06
SDHB-201ENST00000375499 RAD54L2Q9Y4B4 1467 aa27.87■■■□□ 2.05
SDHB-201ENST00000375499 FGD5Q6ZNL6 1462 aa27.86■■■□□ 2.05
SDHB-201ENST00000375499 CYB5RLQ6IPT4 315 aa27.81■■■□□ 2.04
SDHB-201ENST00000375499 AQRO60306 1485 aaKnown RBP eCLIP27.8■■■□□ 2.042e-7■■■■■ 91.1
SDHB-201ENST00000375499 SOGA1O94964 1423 aa27.77■■■□□ 2.04
SDHB-201ENST00000375499 WDR97A6NE52 1622 aa27.71■■■□□ 2.03
SDHB-201ENST00000375499 TDRD9Q8NDG6 1382 aaKnown RBP27.69■■■□□ 2.02
SDHB-201ENST00000375499 TRHP20396 242 aaPredicted RBP27.64■■■□□ 2.02
SDHB-201ENST00000375499 FBLN2P98095 1184 aa27.64■■■□□ 2.02
SDHB-201ENST00000375499 SYNJ1O43426 1573 aa27.63■■■□□ 2.01
SDHB-201ENST00000375499 CHD1O14646 1710 aa27.63■■■□□ 2.01
SDHB-201ENST00000375499 BIVM-ERCC5R4GMW8 1640 aa27.62■■■□□ 2.01
SDHB-201ENST00000375499 TOP2BQ02880 1626 aa27.59■■■□□ 2.01
SDHB-201ENST00000375499 WRNQ14191 1432 aaPredicted RBP eCLIP27.59■■■□□ 2.01
SDHB-201ENST00000375499 ARAP1Q96P48 1450 aa27.57■■■□□ 2
SDHB-201ENST00000375499 ABCA10Q8WWZ4 1543 aa27.56■■■□□ 2
SDHB-201ENST00000375499 SNAPC4Q5SXM2 1469 aa27.55■■■□□ 2
SDHB-201ENST00000375499 ABCA5Q8WWZ7 1642 aa27.52■■■□□ 2
SDHB-201ENST00000375499 PBRM1Q86U86 1689 aa27.51■■□□□ 1.99
SDHB-201ENST00000375499 GRIN2BQ13224 1484 aa27.49■■□□□ 1.99
SDHB-201ENST00000375499 GAPVD1Q14C86 1478 aa27.48■■□□□ 1.99
SDHB-201ENST00000375499 MAGI1Q96QZ7 1491 aaPredicted RBP27.44■■□□□ 1.98
SDHB-201ENST00000375499 CHMP7Q8WUX9 453 aaPredicted RBP27.44■■□□□ 1.98
SDHB-201ENST00000375499 CLASP1Q7Z460 1538 aa27.36■■□□□ 1.97
SDHB-201ENST00000375499 SYNJ2O15056 1496 aa27.35■■□□□ 1.97
SDHB-201ENST00000375499 ADAMTS12P58397 1594 aa27.27■■□□□ 1.96
SDHB-201ENST00000375499 AEBP2Q6ZN18 517 aaPredicted RBP27.21■■□□□ 1.95
SDHB-201ENST00000375499 ERICH3Q5RHP9 1530 aa27.2■■□□□ 1.94
SDHB-201ENST00000375499 GRIN2AQ12879 1464 aa27.17■■□□□ 1.94
SDHB-201ENST00000375499 FHAD1B1AJZ9 1412 aa27.13■■□□□ 1.93
SDHB-201ENST00000375499 CEP170Q5SW79 1584 aa27.11■■□□□ 1.93
SDHB-201ENST00000375499 NUP160Q12769 1436 aa27.07■■□□□ 1.92
SDHB-201ENST00000375499 KIF27Q86VH2 1401 aa26.99■■□□□ 1.91
SDHB-201ENST00000375499 ERCC6L2Q5T890 1561 aa26.97■■□□□ 1.91
SDHB-201ENST00000375499 IGF1RP08069 1367 aa26.96■■□□□ 1.91
SDHB-201ENST00000375499 SHROOM2Q13796 1616 aa26.92■■□□□ 1.9
SDHB-201ENST00000375499 CUL7Q14999 1698 aa26.91■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms