RNA–Protein interactions for RNA: ENST00000374843.8

HLA-DMA-201, Transcript of major histocompatibility complex, class II, DM alpha, humanhuman

APPRIS P1 BASIC

Gene HLA-DMA, Length 1,123 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMA-201ENST00000374843 NISCHQ9Y2I1 1504 aa40.38■■■■■ 4.06
HLA-DMA-201ENST00000374843 CCDC180Q9P1Z9 1646 aa35.57■■■■□ 3.29
HLA-DMA-201ENST00000374843 ZCCHC6Q5VYS8 1495 aaKnown RBP33.89■■■■□ 3.02
HLA-DMA-201ENST00000374843 ABCC9O60706 1549 aa33.78■■■■□ 3
HLA-DMA-201ENST00000374843 DCAF1Q9Y4B6 1507 aa33.54■■■□□ 2.96
HLA-DMA-201ENST00000374843 MYO15BQ96JP2 1530 aa33.35■■■□□ 2.93
HLA-DMA-201ENST00000374843 NACADO15069 1562 aa33.18■■■□□ 2.9
HLA-DMA-201ENST00000374843 DCAF8L2P0C7V8 631 aa33.07■■■□□ 2.88
HLA-DMA-201ENST00000374843 RB1CC1Q8TDY2 1594 aa32.97■■■□□ 2.87
HLA-DMA-201ENST00000374843 SCRIBQ14160 1630 aa32.44■■■□□ 2.78
HLA-DMA-201ENST00000374843 SHROOM4Q9ULL8 1493 aa32.29■■■□□ 2.76
HLA-DMA-201ENST00000374843 UNC13AQ9UPW8 1703 aa32.24■■■□□ 2.75
HLA-DMA-201ENST00000374843 BICRAQ9NZM4 1560 aa31.98■■■□□ 2.71
HLA-DMA-201ENST00000374843 PABPN1Q86U42 306 aaKnown RBP eCLIP31.64■■■□□ 2.66
HLA-DMA-201ENST00000374843 CECR2Q9BXF3 1484 aa31.31■■■□□ 2.6
HLA-DMA-201ENST00000374843 BAZ1AQ9NRL2 1556 aaPredicted RBP31.25■■■□□ 2.59
HLA-DMA-201ENST00000374843 SMARCA4P51532 1647 aa31.16■■■□□ 2.58
HLA-DMA-201ENST00000374843 MROH2BQ7Z745 1585 aa31.13■■■□□ 2.57
HLA-DMA-201ENST00000374843 RSF1Q96T23 1441 aaPredicted RBP31.09■■■□□ 2.57
HLA-DMA-201ENST00000374843 EIF4G1Q04637 1599 aaKnown RBP31.04■■■□□ 2.56
HLA-DMA-201ENST00000374843 PEG3Q9GZU2 1588 aa30.9■■■□□ 2.54
HLA-DMA-201ENST00000374843 WIZO95785 1651 aa30.81■■■□□ 2.52
HLA-DMA-201ENST00000374843 SUPT5HO00267 1087 aaKnown RBP30.78■■■□□ 2.52
HLA-DMA-201ENST00000374843 SMARCA2P51531 1590 aa30.76■■■□□ 2.52
HLA-DMA-201ENST00000374843 ATAD2BQ9ULI0 1458 aa30.74■■■□□ 2.51
HLA-DMA-201ENST00000374843 CC2D2AQ9P2K1 1620 aa30.65■■■□□ 2.5
HLA-DMA-201ENST00000374843 TOP2AP11388 1531 aaKnown RBP30.61■■■□□ 2.49
HLA-DMA-201ENST00000374843 NCAPD3P42695 1498 aa30.59■■■□□ 2.49
HLA-DMA-201ENST00000374843 HMGXB3Q12766 1538 aa30.58■■■□□ 2.49
HLA-DMA-201ENST00000374843 BAZ1BQ9UIG0 1483 aaKnown RBP30.51■■■□□ 2.48
HLA-DMA-201ENST00000374843 CCDC88BA6NC98 1476 aa30.18■■■□□ 2.42
HLA-DMA-201ENST00000374843 DNAJC5BQ9UF47 199 aa30.13■■■□□ 2.41
HLA-DMA-201ENST00000374843 CFTRP13569 1480 aa29.77■■■□□ 2.36
HLA-DMA-201ENST00000374843 CADPSQ9ULU8 1353 aa29.7■■■□□ 2.35
HLA-DMA-201ENST00000374843 PRDM2Q13029 1718 aa29.65■■■□□ 2.34
HLA-DMA-201ENST00000374843 LAMC3Q9Y6N6 1575 aa29.64■■■□□ 2.34
HLA-DMA-201ENST00000374843 NESP48681 1621 aa29.52■■■□□ 2.32
HLA-DMA-201ENST00000374843 FANCD2Q9BXW9 1451 aa29.37■■■□□ 2.29
HLA-DMA-201ENST00000374843 PDS5BQ9NTI5 1447 aa29.36■■■□□ 2.29
HLA-DMA-201ENST00000374843 CHIC1Q5VXU3 224 aa29.35■■■□□ 2.29
HLA-DMA-201ENST00000374843 ABCC8Q09428 1581 aa29.34■■■□□ 2.29
HLA-DMA-201ENST00000374843 WRNQ14191 1432 aaPredicted RBP eCLIP29.27■■■□□ 2.28
HLA-DMA-201ENST00000374843 CEP164Q9UPV0 1460 aa29.26■■■□□ 2.27
HLA-DMA-201ENST00000374843 KIF21AQ7Z4S6 1674 aa29.24■■■□□ 2.27
HLA-DMA-201ENST00000374843 SYNJ1O43426 1573 aa29.19■■■□□ 2.26
HLA-DMA-201ENST00000374843 BIVM-ERCC5R4GMW8 1640 aa29.17■■■□□ 2.26
HLA-DMA-201ENST00000374843 TOP2BQ02880 1626 aa29.16■■■□□ 2.26
HLA-DMA-201ENST00000374843 CUX1P39880 1505 aa29.16■■■□□ 2.26
HLA-DMA-201ENST00000374843 DNMBPQ6XZF7 1577 aa29.1■■■□□ 2.25
HLA-DMA-201ENST00000374843 TRIM41Q8WV44 630 aa29.07■■■□□ 2.24
HLA-DMA-201ENST00000374843 URB2Q14146 1524 aaKnown RBP29.05■■■□□ 2.24
HLA-DMA-201ENST00000374843 MRC2Q9UBG0 1479 aa29.05■■■□□ 2.24
HLA-DMA-201ENST00000374843 ERCC6Q03468 1493 aa29.04■■■□□ 2.24
HLA-DMA-201ENST00000374843 TOPBP1Q92547 1522 aa29.03■■■□□ 2.24
HLA-DMA-201ENST00000374843 THOC2Q8NI27 1593 aaKnown RBP28.98■■■□□ 2.23
HLA-DMA-201ENST00000374843 WDR62O43379 1518 aa28.97■■■□□ 2.23
HLA-DMA-201ENST00000374843 FGD5Q6ZNL6 1462 aa28.9■■■□□ 2.22
HLA-DMA-201ENST00000374843 POLA1P09884 1462 aaPredicted RBP28.85■■■□□ 2.21
HLA-DMA-201ENST00000374843 WDR97A6NE52 1622 aa28.7■■■□□ 2.19
HLA-DMA-201ENST00000374843 ABCA10Q8WWZ4 1543 aa28.69■■■□□ 2.18
HLA-DMA-201ENST00000374843 CUX2O14529 1486 aa28.69■■■□□ 2.18
HLA-DMA-201ENST00000374843 EEA1Q15075 1411 aa28.69■■■□□ 2.18
HLA-DMA-201ENST00000374843 SOGA1O94964 1423 aa28.68■■■□□ 2.18
HLA-DMA-201ENST00000374843 TARBP1Q13395 1621 aaKnown RBP28.67■■■□□ 2.18
HLA-DMA-201ENST00000374843 RAD54L2Q9Y4B4 1467 aa28.66■■■□□ 2.18
HLA-DMA-201ENST00000374843 IFT140Q96RY7 1462 aa28.62■■■□□ 2.17
HLA-DMA-201ENST00000374843 KIF27Q86VH2 1401 aa28.59■■■□□ 2.17
HLA-DMA-201ENST00000374843 RUSC2Q8N2Y8 1516 aa28.57■■■□□ 2.16
HLA-DMA-201ENST00000374843 ABCA5Q8WWZ7 1642 aa28.54■■■□□ 2.16
HLA-DMA-201ENST00000374843 GAPVD1Q14C86 1478 aa28.4■■■□□ 2.14
HLA-DMA-201ENST00000374843 FAM9AQ8IZU1 332 aaPredicted RBP28.39■■■□□ 2.14
HLA-DMA-201ENST00000374843 ZNF608Q9ULD9 1512 aaPredicted RBP28.38■■■□□ 2.13
HLA-DMA-201ENST00000374843 CSRNP3Q8WYN3 585 aa28.38■■■□□ 2.13
HLA-DMA-201ENST00000374843 TDRD9Q8NDG6 1382 aaKnown RBP28.37■■■□□ 2.13
HLA-DMA-201ENST00000374843 EIF4G3O43432 1585 aaKnown RBP28.37■■■□□ 2.13
HLA-DMA-201ENST00000374843 ERICH3Q5RHP9 1530 aa28.37■■■□□ 2.13
HLA-DMA-201ENST00000374843 KIF21BO75037 1637 aa28.36■■■□□ 2.13
HLA-DMA-201ENST00000374843 IGF1RP08069 1367 aa28.34■■■□□ 2.13
HLA-DMA-201ENST00000374843 PRXQ9BXM0 1461 aa28.33■■■□□ 2.13
HLA-DMA-201ENST00000374843 PBRM1Q86U86 1689 aa28.32■■■□□ 2.12
HLA-DMA-201ENST00000374843 AQRO60306 1485 aaKnown RBP eCLIP28.3■■■□□ 2.12
HLA-DMA-201ENST00000374843 CUL7Q14999 1698 aa28.29■■■□□ 2.12
HLA-DMA-201ENST00000374843 GRIN2BQ13224 1484 aa28.28■■■□□ 2.12
HLA-DMA-201ENST00000374843 GOLGA3Q08378 1498 aa28.21■■■□□ 2.11
HLA-DMA-201ENST00000374843 ADAMTS12P58397 1594 aa28.2■■■□□ 2.1
HLA-DMA-201ENST00000374843 CARMIL1Q5VZK9 1371 aa28.17■■■□□ 2.1
HLA-DMA-201ENST00000374843 RAPGEF2Q9Y4G8 1499 aa28.15■■■□□ 2.1
HLA-DMA-201ENST00000374843 MAGI1Q96QZ7 1491 aaPredicted RBP28.15■■■□□ 2.1
HLA-DMA-201ENST00000374843 SNAPC4Q5SXM2 1469 aa28.13■■■□□ 2.09
HLA-DMA-201ENST00000374843 FHAD1B1AJZ9 1412 aa28.11■■■□□ 2.09
HLA-DMA-201ENST00000374843 LOC105371045A0A1W2PR82 267 aa28.07■■■□□ 2.08
HLA-DMA-201ENST00000374843 SYNJ2O15056 1496 aa28.01■■■□□ 2.07
HLA-DMA-201ENST00000374843 TNIKQ9UKE5 1360 aa28■■■□□ 2.07
HLA-DMA-201ENST00000374843 GRIN2AQ12879 1464 aa27.94■■■□□ 2.06
HLA-DMA-201ENST00000374843 EHMT2Q96KQ7 1210 aa27.88■■■□□ 2.05
HLA-DMA-201ENST00000374843 UBTFP17480 764 aaKnown RBP27.87■■■□□ 2.05
HLA-DMA-201ENST00000374843 CTTNBP2Q8WZ74 1663 aa27.87■■■□□ 2.05
HLA-DMA-201ENST00000374843 NUP160Q12769 1436 aa27.81■■■□□ 2.04
HLA-DMA-201ENST00000374843 CHD1O14646 1710 aa27.8■■■□□ 2.04
HLA-DMA-201ENST00000374843 CEP162Q5TB80 1403 aa27.79■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms