RNA–Protein interactions for RNA: ENST00000370087.5

SSR4-204, Transcript of signal sequence receptor subunit 4, humanhuman

APPRIS P1 TSL 3 BASIC

Gene SSR4, Length 745 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR4-204ENST00000370087 NISCHQ9Y2I1 1504 aa39.53■■■■□ 3.92
SSR4-204ENST00000370087 ABCC9O60706 1549 aa36.07■■■■□ 3.36
SSR4-204ENST00000370087 CCDC180Q9P1Z9 1646 aa35.69■■■■□ 3.3
SSR4-204ENST00000370087 DNAJC5BQ9UF47 199 aa34.19■■■■□ 3.06
SSR4-204ENST00000370087 RB1CC1Q8TDY2 1594 aa34.11■■■■□ 3.05
SSR4-204ENST00000370087 NACADO15069 1562 aa33.77■■■■□ 3
SSR4-204ENST00000370087 UNC13AQ9UPW8 1703 aa33.53■■■□□ 2.96
SSR4-204ENST00000370087 PABPN1Q86U42 306 aaKnown RBP eCLIP33.46■■■□□ 2.95
SSR4-204ENST00000370087 DCAF8L2P0C7V8 631 aa33.4■■■□□ 2.94
SSR4-204ENST00000370087 BICRAQ9NZM4 1560 aa33.26■■■□□ 2.91
SSR4-204ENST00000370087 MYO15BQ96JP2 1530 aa33.13■■■□□ 2.89
SSR4-204ENST00000370087 ZCCHC6Q5VYS8 1495 aaKnown RBP32.71■■■□□ 2.83
SSR4-204ENST00000370087 SHROOM4Q9ULL8 1493 aa32.6■■■□□ 2.81
SSR4-204ENST00000370087 CC2D2AQ9P2K1 1620 aa32.59■■■□□ 2.81
SSR4-204ENST00000370087 DCAF1Q9Y4B6 1507 aa32.59■■■□□ 2.81
SSR4-204ENST00000370087 SCRIBQ14160 1630 aa32.54■■■□□ 2.8
SSR4-204ENST00000370087 CECR2Q9BXF3 1484 aa32.49■■■□□ 2.79
SSR4-204ENST00000370087 EIF4G1Q04637 1599 aaKnown RBP32.41■■■□□ 2.78
SSR4-204ENST00000370087 DNAJC5Q9H3Z4 198 aa31.58■■■□□ 2.65
SSR4-204ENST00000370087 CUX2O14529 1486 aa31.18■■■□□ 2.58
SSR4-204ENST00000370087 NCAPD3P42695 1498 aa31.15■■■□□ 2.58
SSR4-204ENST00000370087 ERCC6Q03468 1493 aa31.09■■■□□ 2.57
SSR4-204ENST00000370087 ATAD2BQ9ULI0 1458 aa31.05■■■□□ 2.56
SSR4-204ENST00000370087 SMARCA4P51532 1647 aa30.98■■■□□ 2.55
SSR4-204ENST00000370087 HMGXB3Q12766 1538 aa30.94■■■□□ 2.54
SSR4-204ENST00000370087 NESP48681 1621 aa30.91■■■□□ 2.54
SSR4-204ENST00000370087 SMARCA2P51531 1590 aa30.91■■■□□ 2.54
SSR4-204ENST00000370087 THOC2Q8NI27 1593 aaKnown RBP30.71■■■□□ 2.51
SSR4-204ENST00000370087 BAZ1BQ9UIG0 1483 aaKnown RBP30.7■■■□□ 2.51
SSR4-204ENST00000370087 BAZ1AQ9NRL2 1556 aaPredicted RBP30.68■■■□□ 2.5
SSR4-204ENST00000370087 PEG3Q9GZU2 1588 aa30.64■■■□□ 2.5
SSR4-204ENST00000370087 KIF21AQ7Z4S6 1674 aa30.56■■■□□ 2.48
SSR4-204ENST00000370087 LAMC3Q9Y6N6 1575 aa30.55■■■□□ 2.48
SSR4-204ENST00000370087 MROH2BQ7Z745 1585 aa30.5■■■□□ 2.47
SSR4-204ENST00000370087 PDS5BQ9NTI5 1447 aa30.3■■■□□ 2.44
SSR4-204ENST00000370087 CADPSQ9ULU8 1353 aa30.16■■■□□ 2.42
SSR4-204ENST00000370087 MRC2Q9UBG0 1479 aa30.16■■■□□ 2.42
SSR4-204ENST00000370087 WIZO95785 1651 aa30.16■■■□□ 2.42
SSR4-204ENST00000370087 WDR62O43379 1518 aa30.14■■■□□ 2.42
SSR4-204ENST00000370087 TRIM41Q8WV44 630 aa30.06■■■□□ 2.4
SSR4-204ENST00000370087 CEP164Q9UPV0 1460 aa29.94■■■□□ 2.38
SSR4-204ENST00000370087 FANCD2Q9BXW9 1451 aa29.88■■■□□ 2.37
SSR4-204ENST00000370087 CFTRP13569 1480 aa29.79■■■□□ 2.36
SSR4-204ENST00000370087 URB2Q14146 1524 aaKnown RBP29.72■■■□□ 2.35
SSR4-204ENST00000370087 TOP2AP11388 1531 aaKnown RBP29.69■■■□□ 2.34
SSR4-204ENST00000370087 RSF1Q96T23 1441 aaPredicted RBP29.66■■■□□ 2.34
SSR4-204ENST00000370087 PRDM2Q13029 1718 aa29.59■■■□□ 2.33
SSR4-204ENST00000370087 OSCARQ8IYS5 282 aa29.59■■■□□ 2.33
SSR4-204ENST00000370087 RIMBP3CA6NJZ7 1639 aa29.46■■■□□ 2.31
SSR4-204ENST00000370087 RIMBP3BA6NNM3 1639 aa29.46■■■□□ 2.31
SSR4-204ENST00000370087 RIMBP3Q9UFD9 1639 aa29.46■■■□□ 2.31
SSR4-204ENST00000370087 ZNF608Q9ULD9 1512 aaPredicted RBP29.43■■■□□ 2.3
SSR4-204ENST00000370087 CCDC88BA6NC98 1476 aa29.33■■■□□ 2.29
SSR4-204ENST00000370087 IFT140Q96RY7 1462 aa29.33■■■□□ 2.29
SSR4-204ENST00000370087 TOPBP1Q92547 1522 aa29.3■■■□□ 2.28
SSR4-204ENST00000370087 ARHGEF11O15085 1522 aa29.28■■■□□ 2.28
SSR4-204ENST00000370087 EIF4G3O43432 1585 aaKnown RBP29.27■■■□□ 2.28
SSR4-204ENST00000370087 CHD1O14646 1710 aa29.17■■■□□ 2.26
SSR4-204ENST00000370087 DNMBPQ6XZF7 1577 aa29.16■■■□□ 2.26
SSR4-204ENST00000370087 TARBP1Q13395 1621 aaKnown RBP29.12■■■□□ 2.25
SSR4-204ENST00000370087 ABCC8Q09428 1581 aa29.09■■■□□ 2.25
SSR4-204ENST00000370087 AQRO60306 1485 aaKnown RBP eCLIP29.05■■■□□ 2.241e-7■■■■■ 36.9
SSR4-204ENST00000370087 ARAP1Q96P48 1450 aa28.99■■■□□ 2.23
SSR4-204ENST00000370087 CYB5RLQ6IPT4 315 aa28.98■■■□□ 2.23
SSR4-204ENST00000370087 POLA1P09884 1462 aaPredicted RBP28.97■■■□□ 2.23
SSR4-204ENST00000370087 RAD54L2Q9Y4B4 1467 aa28.89■■■□□ 2.22
SSR4-204ENST00000370087 FBLN2P98095 1184 aa28.84■■■□□ 2.21
SSR4-204ENST00000370087 TDRD9Q8NDG6 1382 aaKnown RBP28.78■■■□□ 2.2
SSR4-204ENST00000370087 SNAPC4Q5SXM2 1469 aa28.78■■■□□ 2.2
SSR4-204ENST00000370087 CLASP1Q7Z460 1538 aa28.77■■■□□ 2.2
SSR4-204ENST00000370087 SOGA1O94964 1423 aa28.76■■■□□ 2.19
SSR4-204ENST00000370087 TRHP20396 242 aaPredicted RBP28.75■■■□□ 2.19
SSR4-204ENST00000370087 FGD5Q6ZNL6 1462 aa28.74■■■□□ 2.19
SSR4-204ENST00000370087 WDR97A6NE52 1622 aa28.71■■■□□ 2.19
SSR4-204ENST00000370087 CUX1P39880 1505 aa28.69■■■□□ 2.18
SSR4-204ENST00000370087 SYNJ1O43426 1573 aa28.64■■■□□ 2.18
SSR4-204ENST00000370087 MAGI1Q96QZ7 1491 aaPredicted RBP28.62■■■□□ 2.17
SSR4-204ENST00000370087 PBRM1Q86U86 1689 aa28.58■■■□□ 2.17
SSR4-204ENST00000370087 GRIN2BQ13224 1484 aa28.57■■■□□ 2.16
SSR4-204ENST00000370087 SYNJ2O15056 1496 aa28.53■■■□□ 2.16
SSR4-204ENST00000370087 CHMP7Q8WUX9 453 aaPredicted RBP28.53■■■□□ 2.16
SSR4-204ENST00000370087 ABCA5Q8WWZ7 1642 aa28.44■■■□□ 2.14
SSR4-204ENST00000370087 GAPVD1Q14C86 1478 aa28.43■■■□□ 2.14
SSR4-204ENST00000370087 ABCA10Q8WWZ4 1543 aa28.36■■■□□ 2.13
SSR4-204ENST00000370087 ERCC6L2Q5T890 1561 aa28.35■■■□□ 2.13
SSR4-204ENST00000370087 ADAMTS12P58397 1594 aa28.25■■■□□ 2.11
SSR4-204ENST00000370087 GRIN2AQ12879 1464 aa28.25■■■□□ 2.11
SSR4-204ENST00000370087 CEP170Q5SW79 1584 aa28.24■■■□□ 2.11
SSR4-204ENST00000370087 NUP160Q12769 1436 aa28.17■■■□□ 2.1
SSR4-204ENST00000370087 AEBP2Q6ZN18 517 aaPredicted RBP28.16■■■□□ 2.1
SSR4-204ENST00000370087 SHROOM2Q13796 1616 aa28.15■■■□□ 2.1
SSR4-204ENST00000370087 BIVM-ERCC5R4GMW8 1640 aa28.14■■■□□ 2.09
SSR4-204ENST00000370087 WRNQ14191 1432 aaPredicted RBP eCLIP28.09■■■□□ 2.09
SSR4-204ENST00000370087 TOP2BQ02880 1626 aa28.09■■■□□ 2.09
SSR4-204ENST00000370087 KIF13AQ9H1H9 1805 aa28.05■■■□□ 2.08
SSR4-204ENST00000370087 FHAD1B1AJZ9 1412 aa28.02■■■□□ 2.08
SSR4-204ENST00000370087 ERICH3Q5RHP9 1530 aa27.98■■■□□ 2.07
SSR4-204ENST00000370087 SUPT5HO00267 1087 aaKnown RBP27.97■■■□□ 2.07
SSR4-204ENST00000370087 PRG4Q92954 1404 aaPredicted RBP27.89■■■□□ 2.06
SSR4-204ENST00000370087 RUSC2Q8N2Y8 1516 aa27.87■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms