RNA–Protein interactions for RNA: ENST00000368406.2

EFNA1-201, Transcript of ephrin A1, humanhuman

TSL 1 (best) BASIC

Gene EFNA1, Length 1,444 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EFNA1-201ENST00000368406 NISCHQ9Y2I1 1504 aa30.3■■■□□ 2.44
EFNA1-201ENST00000368406 CCDC180Q9P1Z9 1646 aa26.92■■□□□ 1.9
EFNA1-201ENST00000368406 ABCC9O60706 1549 aa26.27■■□□□ 1.8
EFNA1-201ENST00000368406 NACADO15069 1562 aa25.33■■□□□ 1.65
EFNA1-201ENST00000368406 RB1CC1Q8TDY2 1594 aa25.32■■□□□ 1.64
EFNA1-201ENST00000368406 DCAF8L2P0C7V8 631 aa25.27■■□□□ 1.64
EFNA1-201ENST00000368406 ZCCHC6Q5VYS8 1495 aaKnown RBP25.23■■□□□ 1.63
EFNA1-201ENST00000368406 MYO15BQ96JP2 1530 aa25.22■■□□□ 1.63
EFNA1-201ENST00000368406 DCAF1Q9Y4B6 1507 aa25.11■■□□□ 1.61
EFNA1-201ENST00000368406 UNC13AQ9UPW8 1703 aa24.71■■□□□ 1.55
EFNA1-201ENST00000368406 PABPN1Q86U42 306 aaKnown RBP eCLIP24.57■■□□□ 1.52
EFNA1-201ENST00000368406 BICRAQ9NZM4 1560 aa24.54■■□□□ 1.52
EFNA1-201ENST00000368406 SCRIBQ14160 1630 aa24.5■■□□□ 1.51
EFNA1-201ENST00000368406 SHROOM4Q9ULL8 1493 aa24.35■■□□□ 1.49
EFNA1-201ENST00000368406 DNAJC5BQ9UF47 199 aa24.12■■□□□ 1.45
EFNA1-201ENST00000368406 EIF4G1Q04637 1599 aaKnown RBP23.9■■□□□ 1.42
EFNA1-201ENST00000368406 CC2D2AQ9P2K1 1620 aa23.78■■□□□ 1.4
EFNA1-201ENST00000368406 CECR2Q9BXF3 1484 aa23.63■■□□□ 1.37
EFNA1-201ENST00000368406 SMARCA4P51532 1647 aa23.48■■□□□ 1.35
EFNA1-201ENST00000368406 BAZ1AQ9NRL2 1556 aaPredicted RBP23.47■■□□□ 1.35
EFNA1-201ENST00000368406 NCAPD3P42695 1498 aa23.38■■□□□ 1.33
EFNA1-201ENST00000368406 ATAD2BQ9ULI0 1458 aa23.37■■□□□ 1.33
EFNA1-201ENST00000368406 SMARCA2P51531 1590 aa23.35■■□□□ 1.33
EFNA1-201ENST00000368406 MROH2BQ7Z745 1585 aa23.32■■□□□ 1.32
EFNA1-201ENST00000368406 PEG3Q9GZU2 1588 aa23.29■■□□□ 1.32
EFNA1-201ENST00000368406 HMGXB3Q12766 1538 aa23.24■■□□□ 1.31
EFNA1-201ENST00000368406 BAZ1BQ9UIG0 1483 aaKnown RBP23.16■■□□□ 1.3
EFNA1-201ENST00000368406 RSF1Q96T23 1441 aaPredicted RBP23.1■■□□□ 1.29
EFNA1-201ENST00000368406 WIZO95785 1651 aa23.05■■□□□ 1.28
EFNA1-201ENST00000368406 TOP2AP11388 1531 aaKnown RBP22.84■■□□□ 1.25
EFNA1-201ENST00000368406 NESP48681 1621 aa22.74■■□□□ 1.23
EFNA1-201ENST00000368406 LAMC3Q9Y6N6 1575 aa22.74■■□□□ 1.23
EFNA1-201ENST00000368406 CADPSQ9ULU8 1353 aa22.69■■□□□ 1.22
EFNA1-201ENST00000368406 SUPT5HO00267 1087 aaKnown RBP22.67■■□□□ 1.22
EFNA1-201ENST00000368406 ERCC6Q03468 1493 aa22.66■■□□□ 1.22
EFNA1-201ENST00000368406 PDS5BQ9NTI5 1447 aa22.6■■□□□ 1.21
EFNA1-201ENST00000368406 CCDC88BA6NC98 1476 aa22.58■■□□□ 1.2
EFNA1-201ENST00000368406 CFTRP13569 1480 aa22.56■■□□□ 1.2
EFNA1-201ENST00000368406 KIF21AQ7Z4S6 1674 aa22.46■■□□□ 1.19
EFNA1-201ENST00000368406 CUX2O14529 1486 aa22.45■■□□□ 1.18
EFNA1-201ENST00000368406 FANCD2Q9BXW9 1451 aa22.41■■□□□ 1.18
EFNA1-201ENST00000368406 THOC2Q8NI27 1593 aaKnown RBP22.39■■□□□ 1.17
EFNA1-201ENST00000368406 CEP164Q9UPV0 1460 aa22.37■■□□□ 1.17
EFNA1-201ENST00000368406 PRDM2Q13029 1718 aa22.35■■□□□ 1.17
EFNA1-201ENST00000368406 MRC2Q9UBG0 1479 aa22.34■■□□□ 1.17
EFNA1-201ENST00000368406 WDR62O43379 1518 aa22.26■■□□□ 1.15
EFNA1-201ENST00000368406 URB2Q14146 1524 aaKnown RBP22.17■■□□□ 1.14
EFNA1-201ENST00000368406 ABCC8Q09428 1581 aa22.1■■□□□ 1.13
EFNA1-201ENST00000368406 TOPBP1Q92547 1522 aa22.05■■□□□ 1.12
EFNA1-201ENST00000368406 DNMBPQ6XZF7 1577 aa22.02■■□□□ 1.12
EFNA1-201ENST00000368406 IFT140Q96RY7 1462 aa21.93■■□□□ 1.1
EFNA1-201ENST00000368406 CUX1P39880 1505 aa21.88■■□□□ 1.09
EFNA1-201ENST00000368406 POLA1P09884 1462 aaPredicted RBP21.86■■□□□ 1.09
EFNA1-201ENST00000368406 TARBP1Q13395 1621 aaKnown RBP21.8■■□□□ 1.08
EFNA1-201ENST00000368406 FGD5Q6ZNL6 1462 aa21.79■■□□□ 1.08
EFNA1-201ENST00000368406 ZNF608Q9ULD9 1512 aaPredicted RBP21.78■■□□□ 1.08
EFNA1-201ENST00000368406 SOGA1O94964 1423 aa21.78■■□□□ 1.08
EFNA1-201ENST00000368406 WRNQ14191 1432 aaPredicted RBP eCLIP21.77■■□□□ 1.08
EFNA1-201ENST00000368406 DNAJC5Q9H3Z4 198 aa21.75■■□□□ 1.07
EFNA1-201ENST00000368406 RAD54L2Q9Y4B4 1467 aa21.74■■□□□ 1.07
EFNA1-201ENST00000368406 TOP2BQ02880 1626 aa21.71■■□□□ 1.07
EFNA1-201ENST00000368406 BIVM-ERCC5R4GMW8 1640 aa21.69■■□□□ 1.06
EFNA1-201ENST00000368406 EIF4G3O43432 1585 aaKnown RBP21.69■■□□□ 1.06
EFNA1-201ENST00000368406 AQRO60306 1485 aaKnown RBP eCLIP21.68■■□□□ 1.061e-11■■■■■ 43.1
EFNA1-201ENST00000368406 SYNJ1O43426 1573 aa21.68■■□□□ 1.06
EFNA1-201ENST00000368406 WDR97A6NE52 1622 aa21.66■■□□□ 1.06
EFNA1-201ENST00000368406 TDRD9Q8NDG6 1382 aaKnown RBP21.65■■□□□ 1.06
EFNA1-201ENST00000368406 ABCA10Q8WWZ4 1543 aa21.62■■□□□ 1.05
EFNA1-201ENST00000368406 OSCARQ8IYS5 282 aa21.55■■□□□ 1.04
EFNA1-201ENST00000368406 GAPVD1Q14C86 1478 aa21.53■■□□□ 1.04
EFNA1-201ENST00000368406 GRIN2BQ13224 1484 aa21.52■■□□□ 1.04
EFNA1-201ENST00000368406 ABCA5Q8WWZ7 1642 aa21.5■■□□□ 1.03
EFNA1-201ENST00000368406 MAGI1Q96QZ7 1491 aaPredicted RBP21.48■■□□□ 1.03
EFNA1-201ENST00000368406 SNAPC4Q5SXM2 1469 aa21.46■■□□□ 1.03
EFNA1-201ENST00000368406 PBRM1Q86U86 1689 aa21.43■■□□□ 1.02
EFNA1-201ENST00000368406 FBLN2P98095 1184 aa21.4■■□□□ 1.02
EFNA1-201ENST00000368406 CHD1O14646 1710 aa21.39■■□□□ 1.02
EFNA1-201ENST00000368406 SYNJ2O15056 1496 aa21.39■■□□□ 1.01
EFNA1-201ENST00000368406 CHMP7Q8WUX9 453 aaPredicted RBP21.38■■□□□ 1.01
EFNA1-201ENST00000368406 TRIM41Q8WV44 630 aa21.38■■□□□ 1.01
EFNA1-201ENST00000368406 ERICH3Q5RHP9 1530 aa21.36■■□□□ 1.01
EFNA1-201ENST00000368406 KIF27Q86VH2 1401 aa21.33■■□□□ 1
EFNA1-201ENST00000368406 FHAD1B1AJZ9 1412 aa21.29■■□□□ 1
EFNA1-201ENST00000368406 CHIC1Q5VXU3 224 aa21.29■■□□□ 1
EFNA1-201ENST00000368406 ADAMTS12P58397 1594 aa21.28■■□□□ 1
EFNA1-201ENST00000368406 IGF1RP08069 1367 aa21.25■□□□□ 0.99
EFNA1-201ENST00000368406 GRIN2AQ12879 1464 aa21.24■□□□□ 0.99
EFNA1-201ENST00000368406 CLASP1Q7Z460 1538 aa21.2■□□□□ 0.98
EFNA1-201ENST00000368406 NUP160Q12769 1436 aa21.17■□□□□ 0.98
EFNA1-201ENST00000368406 CUL7Q14999 1698 aa21.15■□□□□ 0.98
EFNA1-201ENST00000368406 ARHGEF11O15085 1522 aa21.14■□□□□ 0.97
EFNA1-201ENST00000368406 RIMBP3CA6NJZ7 1639 aa21.13■□□□□ 0.97
EFNA1-201ENST00000368406 RIMBP3BA6NNM3 1639 aa21.13■□□□□ 0.97
EFNA1-201ENST00000368406 RIMBP3Q9UFD9 1639 aa21.13■□□□□ 0.97
EFNA1-201ENST00000368406 CARMIL1Q5VZK9 1371 aa21.12■□□□□ 0.97
EFNA1-201ENST00000368406 CEP170Q5SW79 1584 aa21.11■□□□□ 0.97
EFNA1-201ENST00000368406 RUSC2Q8N2Y8 1516 aa21.09■□□□□ 0.97
EFNA1-201ENST00000368406 SHROOM2Q13796 1616 aa20.98■□□□□ 0.95
EFNA1-201ENST00000368406 RAPGEF2Q9Y4G8 1499 aa20.98■□□□□ 0.95
EFNA1-201ENST00000368406 KIAA0586Q9BVV6 1533 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms