RNA–Protein interactions for RNA: ENST00000368311.5

SSR2-202, Transcript of signal sequence receptor subunit 2, humanhuman

TSL 1 (best)

Gene SSR2, Length 5,166 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSR2-202ENST00000368311 NISCHQ9Y2I1 1504 aa15.94■□□□□ 0.14
SSR2-202ENST00000368311 DCAF8L2P0C7V8 631 aa15.09■□□□□ 0.01
SSR2-202ENST00000368311 FAM9AQ8IZU1 332 aaPredicted RBP14.21□□□□□ -0.13
SSR2-202ENST00000368311 CCDC180Q9P1Z9 1646 aa14.02□□□□□ -0.16
SSR2-202ENST00000368311 ABCC9O60706 1549 aa13.95□□□□□ -0.18
SSR2-202ENST00000368311 RB1CC1Q8TDY2 1594 aa13.69□□□□□ -0.22
SSR2-202ENST00000368311 NACADO15069 1562 aa13.54□□□□□ -0.24
SSR2-202ENST00000368311 SHROOM4Q9ULL8 1493 aa13.54□□□□□ -0.24
SSR2-202ENST00000368311 SUPT5HO00267 1087 aaKnown RBP13.45□□□□□ -0.26
SSR2-202ENST00000368311 PABPN1Q86U42 306 aaKnown RBP eCLIP13.3□□□□□ -0.28
SSR2-202ENST00000368311 APLP2Q06481 763 aa13.3□□□□□ -0.28
SSR2-202ENST00000368311 ZCCHC6Q5VYS8 1495 aaKnown RBP13.18□□□□□ -0.3
SSR2-202ENST00000368311 DCAF1Q9Y4B6 1507 aa13.16□□□□□ -0.3
SSR2-202ENST00000368311 MYO15BQ96JP2 1530 aa13.15□□□□□ -0.3
SSR2-202ENST00000368311 SCRIBQ14160 1630 aa13.13□□□□□ -0.31
SSR2-202ENST00000368311 TRIM41Q8WV44 630 aa12.94□□□□□ -0.34
SSR2-202ENST00000368311 ERCC6Q03468 1493 aa12.89□□□□□ -0.35
SSR2-202ENST00000368311 NPM1P06748 294 aaKnown RBP eCLIP12.81□□□□□ -0.36
SSR2-202ENST00000368311 SMARCA2P51531 1590 aa12.79□□□□□ -0.36
SSR2-202ENST00000368311 BAZ1BQ9UIG0 1483 aaKnown RBP12.78□□□□□ -0.36
SSR2-202ENST00000368311 UBTFP17480 764 aaKnown RBP12.75□□□□□ -0.37
SSR2-202ENST00000368311 BAZ1AQ9NRL2 1556 aaPredicted RBP12.74□□□□□ -0.37
SSR2-202ENST00000368311 MYT1LQ9UL68 1186 aa12.74□□□□□ -0.37
SSR2-202ENST00000368311 ATP1B4Q9UN42 357 aaPredicted RBP12.74□□□□□ -0.37
SSR2-202ENST00000368311 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.72□□□□□ -0.37
SSR2-202ENST00000368311 HNRNPUL2Q1KMD3 747 aaKnown RBP12.72□□□□□ -0.37
SSR2-202ENST00000368311 PDS5BQ9NTI5 1447 aa12.72□□□□□ -0.37
SSR2-202ENST00000368311 FBLN2P98095 1184 aa12.69□□□□□ -0.38
SSR2-202ENST00000368311 CECR2Q9BXF3 1484 aa12.65□□□□□ -0.39
SSR2-202ENST00000368311 CDK11AQ9UQ88 783 aaPredicted RBP12.6□□□□□ -0.39
SSR2-202ENST00000368311 CHMP7Q8WUX9 453 aaPredicted RBP12.55□□□□□ -0.4
SSR2-202ENST00000368311 ABCC8Q09428 1581 aa12.51□□□□□ -0.41
SSR2-202ENST00000368311 ESF1Q9H501 851 aaKnown RBP12.5□□□□□ -0.41
SSR2-202ENST00000368311 RANGAP1P46060 587 aaPredicted RBP12.43□□□□□ -0.42
SSR2-202ENST00000368311 TTBK1Q5TCY1 1321 aaPredicted RBP12.43□□□□□ -0.42
SSR2-202ENST00000368311 EHMT2Q96KQ7 1210 aa12.39□□□□□ -0.43
SSR2-202ENST00000368311 ACIN1Q9UKV3 1341 aaKnown RBP12.36□□□□□ -0.43
SSR2-202ENST00000368311 CEP164Q9UPV0 1460 aa12.35□□□□□ -0.43
SSR2-202ENST00000368311 EEA1Q15075 1411 aa12.33□□□□□ -0.44
SSR2-202ENST00000368311 CADPSQ9ULU8 1353 aa12.32□□□□□ -0.44
SSR2-202ENST00000368311 EIF4G1Q04637 1599 aaKnown RBP12.3□□□□□ -0.44
SSR2-202ENST00000368311 WRNQ14191 1432 aaPredicted RBP eCLIP12.29□□□□□ -0.44
SSR2-202ENST00000368311 NCAPD3P42695 1498 aa12.29□□□□□ -0.44
SSR2-202ENST00000368311 KIF27Q86VH2 1401 aa12.27□□□□□ -0.45
SSR2-202ENST00000368311 ATAD2BQ9ULI0 1458 aa12.27□□□□□ -0.45
SSR2-202ENST00000368311 RSF1Q96T23 1441 aaPredicted RBP12.25□□□□□ -0.45
SSR2-202ENST00000368311 CARMIL2Q6F5E8 1435 aa12.25□□□□□ -0.45
SSR2-202ENST00000368311 SMARCA4P51532 1647 aa12.24□□□□□ -0.45
SSR2-202ENST00000368311 TOP2AP11388 1531 aaKnown RBP12.24□□□□□ -0.45
SSR2-202ENST00000368311 HMGXB3Q12766 1538 aa12.22□□□□□ -0.45
SSR2-202ENST00000368311 OSCARQ8IYS5 282 aa12.21□□□□□ -0.46
SSR2-202ENST00000368311 CSRNP3Q8WYN3 585 aa12.2□□□□□ -0.46
SSR2-202ENST00000368311 TRHP20396 242 aaPredicted RBP12.19□□□□□ -0.46
SSR2-202ENST00000368311 CC2D2AQ9P2K1 1620 aa12.17□□□□□ -0.46
SSR2-202ENST00000368311 MRC2Q9UBG0 1479 aa12.13□□□□□ -0.47
SSR2-202ENST00000368311 PLEKHD1A6NEE1 506 aa12.12□□□□□ -0.47
SSR2-202ENST00000368311 FANCD2Q9BXW9 1451 aa12.12□□□□□ -0.47
SSR2-202ENST00000368311 SOGA1O94964 1423 aa12.11□□□□□ -0.47
SSR2-202ENST00000368311 LAMC3Q9Y6N6 1575 aa12.07□□□□□ -0.48
SSR2-202ENST00000368311 GOLGA3Q08378 1498 aa12.06□□□□□ -0.48
SSR2-202ENST00000368311 STAG3Q9UJ98 1225 aa12.06□□□□□ -0.48
SSR2-202ENST00000368311 IFT140Q96RY7 1462 aa12.06□□□□□ -0.48
SSR2-202ENST00000368311 CLIP1P30622 1438 aa12.06□□□□□ -0.48
SSR2-202ENST00000368311 AEBP2Q6ZN18 517 aaPredicted RBP12.04□□□□□ -0.48
SSR2-202ENST00000368311 BCANQ96GW7 911 aa12.04□□□□□ -0.48
SSR2-202ENST00000368311 ZEB1P37275 1124 aaPredicted RBP12.04□□□□□ -0.48
SSR2-202ENST00000368311 MROH2BQ7Z745 1585 aa12.02□□□□□ -0.48
SSR2-202ENST00000368311 CUX2O14529 1486 aa12.02□□□□□ -0.48
SSR2-202ENST00000368311 TSPY4P0CV99 314 aa12.01□□□□□ -0.49
SSR2-202ENST00000368311 TSPY10P0CW01 314 aa12.01□□□□□ -0.49
SSR2-202ENST00000368311 HDGFP51858 240 aaKnown RBP11.99□□□□□ -0.49
SSR2-202ENST00000368311 ARID4BQ4LE39 1312 aaPredicted RBP11.98□□□□□ -0.49
SSR2-202ENST00000368311 CHIC1Q5VXU3 224 aa11.98□□□□□ -0.49
SSR2-202ENST00000368311 CCDC88BA6NC98 1476 aa11.98□□□□□ -0.49
SSR2-202ENST00000368311 FAM50AQ14320 339 aaKnown RBP11.97□□□□□ -0.49
SSR2-202ENST00000368311 FHAD1B1AJZ9 1412 aa11.95□□□□□ -0.5
SSR2-202ENST00000368311 CARMIL1Q5VZK9 1371 aa11.94□□□□□ -0.5
SSR2-202ENST00000368311 ZNF777Q9ULD5 760 aaPredicted RBP11.93□□□□□ -0.5
SSR2-202ENST00000368311 MTUS2Q5JR59 1369 aa11.93□□□□□ -0.5
SSR2-202ENST00000368311 TRIM52Q96A61 297 aa11.92□□□□□ -0.5
SSR2-202ENST00000368311 GRIN2BQ13224 1484 aa11.89□□□□□ -0.51
SSR2-202ENST00000368311 BICRAQ9NZM4 1560 aa11.89□□□□□ -0.51
SSR2-202ENST00000368311 KANK1Q14678 1352 aa11.88□□□□□ -0.51
SSR2-202ENST00000368311 P3H3Q8IVL6 736 aa11.87□□□□□ -0.51
SSR2-202ENST00000368311 PELP1Q8IZL8 1130 aaKnown RBP11.87□□□□□ -0.51
SSR2-202ENST00000368311 CFTRP13569 1480 aa11.86□□□□□ -0.51
SSR2-202ENST00000368311 CEP162Q5TB80 1403 aa11.84□□□□□ -0.51
SSR2-202ENST00000368311 KCNH8Q96L42 1107 aa11.84□□□□□ -0.51
SSR2-202ENST00000368311 FMN1Q68DA7 1419 aa11.83□□□□□ -0.52
SSR2-202ENST00000368311 GAPVD1Q14C86 1478 aa11.83□□□□□ -0.52
SSR2-202ENST00000368311 WIZO95785 1651 aa11.82□□□□□ -0.52
SSR2-202ENST00000368311 ITGAEP38570 1179 aa11.81□□□□□ -0.52
SSR2-202ENST00000368311 RSPH4AQ5TD94 716 aa11.81□□□□□ -0.52
SSR2-202ENST00000368311 CCER1Q8TC90 406 aaPredicted RBP11.81□□□□□ -0.52
SSR2-202ENST00000368311 PPP1R15AO75807 674 aaPredicted RBP11.8□□□□□ -0.52
SSR2-202ENST00000368311 RAPGEF2Q9Y4G8 1499 aa11.8□□□□□ -0.52
SSR2-202ENST00000368311 MYT1Q01538 1121 aa11.79□□□□□ -0.52
SSR2-202ENST00000368311 EFCAB2Q5VUJ9 269 aa11.79□□□□□ -0.52
SSR2-202ENST00000368311 DNMBPQ6XZF7 1577 aa11.79□□□□□ -0.52
SSR2-202ENST00000368311 TDRD9Q8NDG6 1382 aaKnown RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms