RNA–Protein interactions for RNA: ENST00000368259.6

CCT3-204, Transcript of chaperonin containing TCP1 subunit 3, humanhuman

TSL 2 BASIC

Gene CCT3, Length 1,815 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCT3-204ENST00000368259 NISCHQ9Y2I1 1504 aa24.92■■□□□ 1.58
CCT3-204ENST00000368259 HRCP23327 699 aa22.2■■□□□ 1.14
CCT3-204ENST00000368259 PELP1Q8IZL8 1130 aaKnown RBP22■■□□□ 1.11
CCT3-204ENST00000368259 CCDC180Q9P1Z9 1646 aa21.71■■□□□ 1.07
CCT3-204ENST00000368259 ABCC9O60706 1549 aa21.66■■□□□ 1.06
CCT3-204ENST00000368259 DCAF1Q9Y4B6 1507 aa21.55■■□□□ 1.04
CCT3-204ENST00000368259 MYO15BQ96JP2 1530 aa21.42■■□□□ 1.02
CCT3-204ENST00000368259 MYT1Q01538 1121 aa21.37■■□□□ 1.01
CCT3-204ENST00000368259 CHIC1Q5VXU3 224 aa21.33■■□□□ 1.01
CCT3-204ENST00000368259 PCGF6Q9BYE7 350 aa21.32■■□□□ 1
CCT3-204ENST00000368259 ZCCHC6Q5VYS8 1495 aaKnown RBP21.31■■□□□ 1
CCT3-204ENST00000368259 SUPT5HO00267 1087 aaKnown RBP21.26■□□□□ 0.99
CCT3-204ENST00000368259 SHROOM4Q9ULL8 1493 aa21.24■□□□□ 0.99
CCT3-204ENST00000368259 ZEB1P37275 1124 aaPredicted RBP21.18■□□□□ 0.98
CCT3-204ENST00000368259 PPARGC1BQ86YN6 1023 aaKnown RBP21.15■□□□□ 0.98
CCT3-204ENST00000368259 TRIM26Q12899 539 aaPredicted RBP21.04■□□□□ 0.96
CCT3-204ENST00000368259 SCAF1Q9H7N4 1312 aaKnown RBP20.81■□□□□ 0.92
CCT3-204ENST00000368259 DNAJC5BQ9UF47 199 aa20.72■□□□□ 0.91
CCT3-204ENST00000368259 RB1CC1Q8TDY2 1594 aa20.5■□□□□ 0.87
CCT3-204ENST00000368259 ACIN1Q9UKV3 1341 aaKnown RBP20.48■□□□□ 0.87
CCT3-204ENST00000368259 LOC105371045A0A1W2PR82 267 aa20.46■□□□□ 0.87
CCT3-204ENST00000368259 CENPBP07199 599 aaPredicted RBP20.35■□□□□ 0.85
CCT3-204ENST00000368259 NACADO15069 1562 aa20.23■□□□□ 0.83
CCT3-204ENST00000368259 TTBK1Q5TCY1 1321 aaPredicted RBP20.2■□□□□ 0.82
CCT3-204ENST00000368259 NEUROD1Q13562 356 aa20.19■□□□□ 0.82
CCT3-204ENST00000368259 DCAF8L2P0C7V8 631 aa20.17■□□□□ 0.82
CCT3-204ENST00000368259 GTF3C3Q9Y5Q9 886 aa20.11■□□□□ 0.81
CCT3-204ENST00000368259 PABPN1Q86U42 306 aaKnown RBP eCLIP20.02■□□□□ 0.79
CCT3-204ENST00000368259 DIEXFQ68CQ4 756 aaKnown RBP20■□□□□ 0.79
CCT3-204ENST00000368259 UNC13AQ9UPW8 1703 aa19.99■□□□□ 0.79
CCT3-204ENST00000368259 TRIM41Q8WV44 630 aa19.96■□□□□ 0.79
CCT3-204ENST00000368259 RSF1Q96T23 1441 aaPredicted RBP19.93■□□□□ 0.78
CCT3-204ENST00000368259 CLSPNQ9HAW4 1339 aa19.91■□□□□ 0.78
CCT3-204ENST00000368259 SCRIBQ14160 1630 aa19.89■□□□□ 0.77
CCT3-204ENST00000368259 WRNQ14191 1432 aaPredicted RBP eCLIP19.85■□□□□ 0.77
CCT3-204ENST00000368259 BICRAQ9NZM4 1560 aa19.85■□□□□ 0.77
CCT3-204ENST00000368259 CCER1Q8TC90 406 aaPredicted RBP19.85■□□□□ 0.77
CCT3-204ENST00000368259 ZNF316A6NFI3 1004 aaPredicted RBP19.71■□□□□ 0.75
CCT3-204ENST00000368259 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.69■□□□□ 0.74
CCT3-204ENST00000368259 CECR2Q9BXF3 1484 aa19.61■□□□□ 0.73
CCT3-204ENST00000368259 CC2D2AQ9P2K1 1620 aa19.59■□□□□ 0.73
CCT3-204ENST00000368259 EIF4G1Q04637 1599 aaKnown RBP19.57■□□□□ 0.72
CCT3-204ENST00000368259 DNAJC5Q9H3Z4 198 aa19.53■□□□□ 0.72
CCT3-204ENST00000368259 FAM9AQ8IZU1 332 aaPredicted RBP19.5■□□□□ 0.71
CCT3-204ENST00000368259 EEA1Q15075 1411 aa19.45■□□□□ 0.7
CCT3-204ENST00000368259 TNIKQ9UKE5 1360 aa19.42■□□□□ 0.7
CCT3-204ENST00000368259 BAZ1AQ9NRL2 1556 aaPredicted RBP19.42■□□□□ 0.7
CCT3-204ENST00000368259 ANP32EQ9BTT0 268 aa19.41■□□□□ 0.7
CCT3-204ENST00000368259 CEP162Q5TB80 1403 aa19.4■□□□□ 0.7
CCT3-204ENST00000368259 MIER1Q8N108 512 aa19.35■□□□□ 0.69
CCT3-204ENST00000368259 MROH2BQ7Z745 1585 aa19.26■□□□□ 0.67
CCT3-204ENST00000368259 YTHDC1Q96MU7 727 aaKnown RBP19.26■□□□□ 0.67
CCT3-204ENST00000368259 BCL11AQ9H165 835 aa19.26■□□□□ 0.67
CCT3-204ENST00000368259 SUPT16HQ9Y5B9 1047 aaKnown RBP19.25■□□□□ 0.67
CCT3-204ENST00000368259 WIZO95785 1651 aa19.2■□□□□ 0.66
CCT3-204ENST00000368259 TSHZ2Q9NRE2 1034 aa19.18■□□□□ 0.66
CCT3-204ENST00000368259 GOLGA3Q08378 1498 aa19.17■□□□□ 0.66
CCT3-204ENST00000368259 TOP2AP11388 1531 aaKnown RBP19.12■□□□□ 0.65
CCT3-204ENST00000368259 KIF21BO75037 1637 aa19.09■□□□□ 0.65
CCT3-204ENST00000368259 SMARCA4P51532 1647 aa19.08■□□□□ 0.65
CCT3-204ENST00000368259 CCDC88BA6NC98 1476 aa19.07■□□□□ 0.64
CCT3-204ENST00000368259 EHMT2Q96KQ7 1210 aa19.04■□□□□ 0.64
CCT3-204ENST00000368259 CUX2O14529 1486 aa19.02■□□□□ 0.63
CCT3-204ENST00000368259 BAZ1BQ9UIG0 1483 aaKnown RBP19.01■□□□□ 0.63
CCT3-204ENST00000368259 CEP164Q9UPV0 1460 aa19■□□□□ 0.63
CCT3-204ENST00000368259 ABCC8Q09428 1581 aa19■□□□□ 0.63
CCT3-204ENST00000368259 CSRNP3Q8WYN3 585 aa19■□□□□ 0.63
CCT3-204ENST00000368259 VPS8Q8N3P4 1428 aa18.99■□□□□ 0.63
CCT3-204ENST00000368259 SMARCA2P51531 1590 aa18.96■□□□□ 0.63
CCT3-204ENST00000368259 SOGA1O94964 1423 aa18.94■□□□□ 0.62
CCT3-204ENST00000368259 MYT1LQ9UL68 1186 aa18.91■□□□□ 0.62
CCT3-204ENST00000368259 DHX57Q6P158 1386 aaKnown RBP18.88■□□□□ 0.61
CCT3-204ENST00000368259 CLIP1P30622 1438 aa18.86■□□□□ 0.61
CCT3-204ENST00000368259 PEG3Q9GZU2 1588 aa18.84■□□□□ 0.61
CCT3-204ENST00000368259 UBTFP17480 764 aaKnown RBP18.82■□□□□ 0.6
CCT3-204ENST00000368259 ERCC6Q03468 1493 aa18.8■□□□□ 0.6
CCT3-204ENST00000368259 HNRNPUL2Q1KMD3 747 aaKnown RBP18.79■□□□□ 0.6
CCT3-204ENST00000368259 APLP2Q06481 763 aa18.74■□□□□ 0.59
CCT3-204ENST00000368259 RUSC2Q8N2Y8 1516 aa18.74■□□□□ 0.59
CCT3-204ENST00000368259 RRBP1Q9P2E9 1410 aaKnown RBP18.73■□□□□ 0.59
CCT3-204ENST00000368259 FANCIQ9NVI1 1328 aa18.73■□□□□ 0.59
CCT3-204ENST00000368259 RBM19Q9Y4C8 960 aaKnown RBP18.72■□□□□ 0.59
CCT3-204ENST00000368259 NEFLP07196 543 aa18.69■□□□□ 0.58
CCT3-204ENST00000368259 ERICH3Q5RHP9 1530 aa18.66■□□□□ 0.58
CCT3-204ENST00000368259 ATAD2BQ9ULI0 1458 aa18.65■□□□□ 0.58
CCT3-204ENST00000368259 NCAPD3P42695 1498 aa18.64■□□□□ 0.57
CCT3-204ENST00000368259 CCER2I3L3R5 266 aa18.63■□□□□ 0.57
CCT3-204ENST00000368259 ERICH6Q7L0X2 663 aa18.63■□□□□ 0.57
CCT3-204ENST00000368259 FKBP8Q14318 412 aa18.6■□□□□ 0.57
CCT3-204ENST00000368259 SYNJ1O43426 1573 aa18.59■□□□□ 0.57
CCT3-204ENST00000368259 TIMELESSQ9UNS1 1208 aa18.58■□□□□ 0.57
CCT3-204ENST00000368259 ERICH6BQ5W0A0 696 aa18.58■□□□□ 0.56
CCT3-204ENST00000368259 HMGXB3Q12766 1538 aa18.55■□□□□ 0.56
CCT3-204ENST00000368259 RAPGEF2Q9Y4G8 1499 aa18.52■□□□□ 0.55
CCT3-204ENST00000368259 MAP3K1Q13233 1512 aa18.5■□□□□ 0.55
CCT3-204ENST00000368259 MAPKBP1O60336 1514 aa18.49■□□□□ 0.55
CCT3-204ENST00000368259 ARAP1Q96P48 1450 aa18.48■□□□□ 0.55
CCT3-204ENST00000368259 PRKCSHP14314 528 aaPredicted RBP18.48■□□□□ 0.55
CCT3-204ENST00000368259 CCNB3Q8WWL7 1395 aa18.46■□□□□ 0.55
CCT3-204ENST00000368259 THOC2Q8NI27 1593 aaKnown RBP18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms