RNA–Protein interactions for RNA: ENST00000366985.5

ATF3-205, Transcript of activating transcription factor 3, humanhuman

TSL 5

Gene ATF3, Length 516 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATF3-205ENST00000366985 NISCHQ9Y2I1 1504 aa19.41■□□□□ 0.7
ATF3-205ENST00000366985 DNAJC5BQ9UF47 199 aa18.22■□□□□ 0.51
ATF3-205ENST00000366985 ABCC9O60706 1549 aa18.17■□□□□ 0.5
ATF3-205ENST00000366985 DNAJC5Q9H3Z4 198 aa17.83■□□□□ 0.44
ATF3-205ENST00000366985 CCDC180Q9P1Z9 1646 aa17.76■□□□□ 0.43
ATF3-205ENST00000366985 AEBP2Q6ZN18 517 aaPredicted RBP17.65■□□□□ 0.42
ATF3-205ENST00000366985 RB1CC1Q8TDY2 1594 aa17.18■□□□□ 0.34
ATF3-205ENST00000366985 CHIC1Q5VXU3 224 aa17.01■□□□□ 0.31
ATF3-205ENST00000366985 NACADO15069 1562 aa16.89■□□□□ 0.29
ATF3-205ENST00000366985 PABPN1Q86U42 306 aaKnown RBP eCLIP16.79■□□□□ 0.28
ATF3-205ENST00000366985 DCAF8L2P0C7V8 631 aa16.74■□□□□ 0.27
ATF3-205ENST00000366985 UNC13AQ9UPW8 1703 aa16.67■□□□□ 0.26
ATF3-205ENST00000366985 TRIM41Q8WV44 630 aa16.51■□□□□ 0.23
ATF3-205ENST00000366985 BICRAQ9NZM4 1560 aa16.5■□□□□ 0.23
ATF3-205ENST00000366985 CECR2Q9BXF3 1484 aa16.45■□□□□ 0.22
ATF3-205ENST00000366985 MYO15BQ96JP2 1530 aa16.45■□□□□ 0.22
ATF3-205ENST00000366985 SHROOM4Q9ULL8 1493 aa16.42■□□□□ 0.22
ATF3-205ENST00000366985 CC2D2AQ9P2K1 1620 aa16.4■□□□□ 0.22
ATF3-205ENST00000366985 EIF4G1Q04637 1599 aaKnown RBP16.22■□□□□ 0.19
ATF3-205ENST00000366985 SCRIBQ14160 1630 aa16.08■□□□□ 0.17
ATF3-205ENST00000366985 DCAF1Q9Y4B6 1507 aa16.04■□□□□ 0.16
ATF3-205ENST00000366985 CUX2O14529 1486 aa15.99■□□□□ 0.15
ATF3-205ENST00000366985 ZCCHC6Q5VYS8 1495 aaKnown RBP15.96■□□□□ 0.14
ATF3-205ENST00000366985 ERCC6Q03468 1493 aa15.85■□□□□ 0.13
ATF3-205ENST00000366985 ILDR1Q86SU0 546 aaPredicted RBP15.61■□□□□ 0.09
ATF3-205ENST00000366985 NCAPD3P42695 1498 aa15.52■□□□□ 0.08
ATF3-205ENST00000366985 SMARCA2P51531 1590 aa15.44■□□□□ 0.06
ATF3-205ENST00000366985 HMGXB3Q12766 1538 aa15.42■□□□□ 0.06
ATF3-205ENST00000366985 NESP48681 1621 aa15.39■□□□□ 0.05
ATF3-205ENST00000366985 THOC2Q8NI27 1593 aaKnown RBP15.39■□□□□ 0.05
ATF3-205ENST00000366985 ATAD2BQ9ULI0 1458 aa15.39■□□□□ 0.05
ATF3-205ENST00000366985 LAMC3Q9Y6N6 1575 aa15.35■□□□□ 0.05
ATF3-205ENST00000366985 BAZ1BQ9UIG0 1483 aaKnown RBP15.31■□□□□ 0.04
ATF3-205ENST00000366985 PDS5BQ9NTI5 1447 aa15.3■□□□□ 0.04
ATF3-205ENST00000366985 SMARCA4P51532 1647 aa15.28■□□□□ 0.04
ATF3-205ENST00000366985 KIF21AQ7Z4S6 1674 aa15.27■□□□□ 0.03
ATF3-205ENST00000366985 TRHP20396 242 aaPredicted RBP15.26■□□□□ 0.03
ATF3-205ENST00000366985 BAZ1AQ9NRL2 1556 aaPredicted RBP15.19■□□□□ 0.02
ATF3-205ENST00000366985 OSCARQ8IYS5 282 aa15.15■□□□□ 0.02
ATF3-205ENST00000366985 MRC2Q9UBG0 1479 aa15.14■□□□□ 0.01
ATF3-205ENST00000366985 PEG3Q9GZU2 1588 aa15.11■□□□□ 0.01
ATF3-205ENST00000366985 SENP3Q9H4L4 574 aaPredicted RBP15.1■□□□□ 0.01
ATF3-205ENST00000366985 WDR62O43379 1518 aa15.08■□□□□ 0.01
ATF3-205ENST00000366985 CADPSQ9ULU8 1353 aa15.05■□□□□ -0
ATF3-205ENST00000366985 CEP164Q9UPV0 1460 aa15.01□□□□□ -0.01
ATF3-205ENST00000366985 RIMBP3CA6NJZ7 1639 aa15□□□□□ -0.01
ATF3-205ENST00000366985 RIMBP3BA6NNM3 1639 aa15□□□□□ -0.01
ATF3-205ENST00000366985 RIMBP3Q9UFD9 1639 aa15□□□□□ -0.01
ATF3-205ENST00000366985 MROH2BQ7Z745 1585 aa14.9□□□□□ -0.02
ATF3-205ENST00000366985 FANCD2Q9BXW9 1451 aa14.9□□□□□ -0.02
ATF3-205ENST00000366985 CYB5RLQ6IPT4 315 aa14.9□□□□□ -0.02
ATF3-205ENST00000366985 PHF23Q9BUL5 403 aaPredicted RBP14.9□□□□□ -0.02
ATF3-205ENST00000366985 ARHGEF11O15085 1522 aa14.84□□□□□ -0.03
ATF3-205ENST00000366985 CFTRP13569 1480 aa14.75□□□□□ -0.05
ATF3-205ENST00000366985 WIZO95785 1651 aa14.74□□□□□ -0.05
ATF3-205ENST00000366985 URB2Q14146 1524 aaKnown RBP14.73□□□□□ -0.05
ATF3-205ENST00000366985 IFT140Q96RY7 1462 aa14.71□□□□□ -0.05
ATF3-205ENST00000366985 PRDM2Q13029 1718 aa14.69□□□□□ -0.06
ATF3-205ENST00000366985 LMTK3Q96Q04 1460 aa14.67□□□□□ -0.06
ATF3-205ENST00000366985 SOCS7O14512 581 aa14.65□□□□□ -0.06
ATF3-205ENST00000366985 CHD1O14646 1710 aa14.62□□□□□ -0.07
ATF3-205ENST00000366985 RSF1Q96T23 1441 aaPredicted RBP14.62□□□□□ -0.07
ATF3-205ENST00000366985 ZNF608Q9ULD9 1512 aaPredicted RBP14.61□□□□□ -0.07
ATF3-205ENST00000366985 EIF4G3O43432 1585 aaKnown RBP14.61□□□□□ -0.07
ATF3-205ENST00000366985 FBLN2P98095 1184 aa14.61□□□□□ -0.07
ATF3-205ENST00000366985 ARAP1Q96P48 1450 aa14.6□□□□□ -0.07
ATF3-205ENST00000366985 ABCC8Q09428 1581 aa14.6□□□□□ -0.07
ATF3-205ENST00000366985 TOP2AP11388 1531 aaKnown RBP14.56□□□□□ -0.08
ATF3-205ENST00000366985 FBXO41Q8TF61 875 aa14.54□□□□□ -0.08
ATF3-205ENST00000366985 TOPBP1Q92547 1522 aa14.53□□□□□ -0.08
ATF3-205ENST00000366985 ILDR2Q71H61 639 aa14.5□□□□□ -0.09
ATF3-205ENST00000366985 DNMBPQ6XZF7 1577 aa14.48□□□□□ -0.09
ATF3-205ENST00000366985 AQRO60306 1485 aaKnown RBP eCLIP14.46□□□□□ -0.098e-7■□□□□ 9.1
ATF3-205ENST00000366985 SYNJ1O43426 1573 aa14.45□□□□□ -0.1
ATF3-205ENST00000366985 KDM4FA0A1W2PPD8 638 aa14.44□□□□□ -0.1
ATF3-205ENST00000366985 TARBP1Q13395 1621 aaKnown RBP14.42□□□□□ -0.1
ATF3-205ENST00000366985 CHMP7Q8WUX9 453 aaPredicted RBP14.41□□□□□ -0.1
ATF3-205ENST00000366985 WDR97A6NE52 1622 aa14.37□□□□□ -0.11
ATF3-205ENST00000366985 CLASP1Q7Z460 1538 aa14.36□□□□□ -0.11
ATF3-205ENST00000366985 CCDC88BA6NC98 1476 aa14.35□□□□□ -0.11
ATF3-205ENST00000366985 ERCC6L2Q5T890 1561 aa14.34□□□□□ -0.11
ATF3-205ENST00000366985 POLA1P09884 1462 aaPredicted RBP14.33□□□□□ -0.12
ATF3-205ENST00000366985 SNAPC4Q5SXM2 1469 aa14.33□□□□□ -0.12
ATF3-205ENST00000366985 MAGI1Q96QZ7 1491 aaPredicted RBP14.33□□□□□ -0.12
ATF3-205ENST00000366985 SOGA1O94964 1423 aa14.32□□□□□ -0.12
ATF3-205ENST00000366985 GAPVD1Q14C86 1478 aa14.31□□□□□ -0.12
ATF3-205ENST00000366985 TDRD9Q8NDG6 1382 aaKnown RBP14.3□□□□□ -0.12
ATF3-205ENST00000366985 DISP3Q9P2K9 1392 aa14.29□□□□□ -0.12
ATF3-205ENST00000366985 SYNJ2O15056 1496 aa14.27□□□□□ -0.12
ATF3-205ENST00000366985 GRIN2BQ13224 1484 aa14.27□□□□□ -0.12
ATF3-205ENST00000366985 RAD54L2Q9Y4B4 1467 aa14.26□□□□□ -0.13
ATF3-205ENST00000366985 HECW2Q9P2P5 1572 aa14.22□□□□□ -0.13
ATF3-205ENST00000366985 PBRM1Q86U86 1689 aa14.2□□□□□ -0.14
ATF3-205ENST00000366985 FGD5Q6ZNL6 1462 aa14.19□□□□□ -0.14
ATF3-205ENST00000366985 KIF13AQ9H1H9 1805 aa14.13□□□□□ -0.15
ATF3-205ENST00000366985 NPM1P06748 294 aaKnown RBP eCLIP14.11□□□□□ -0.15
ATF3-205ENST00000366985 CEP170Q5SW79 1584 aa14.07□□□□□ -0.16
ATF3-205ENST00000366985 GRIN2AQ12879 1464 aa14.06□□□□□ -0.16
ATF3-205ENST00000366985 CUX1P39880 1505 aa14.05□□□□□ -0.16
ATF3-205ENST00000366985 FAM69CQ0P6D2 419 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms