RNA–Protein interactions for RNA: ENST00000366815.7

H3F3A-203, Transcript of H3 histone family member 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene H3F3A, Length 1,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3A-203ENST00000366815 AEBP2Q6ZN18 517 aaPredicted RBP34.99■■■■□ 3.19
H3F3A-203ENST00000366815 CHIC1Q5VXU3 224 aa33.28■■■□□ 2.92
H3F3A-203ENST00000366815 SENP3Q9H4L4 574 aaPredicted RBP29.9■■■□□ 2.38
H3F3A-203ENST00000366815 PHF23Q9BUL5 403 aaPredicted RBP29.52■■■□□ 2.32
H3F3A-203ENST00000366815 FOXD1Q16676 465 aa27.84■■■□□ 2.05
H3F3A-203ENST00000366815 NISCHQ9Y2I1 1504 aa27.69■■■□□ 2.02
H3F3A-203ENST00000366815 PLPPR3Q6T4P5 718 aa26.65■■□□□ 1.86
H3F3A-203ENST00000366815 MSH5O43196 834 aa26.08■■□□□ 1.77
H3F3A-203ENST00000366815 PIAS4Q8N2W9 510 aaPredicted RBP26.07■■□□□ 1.76
H3F3A-203ENST00000366815 PPP6R1Q9UPN7 881 aa26.04■■□□□ 1.76
H3F3A-203ENST00000366815 ADRA2BP18089 450 aa26■■□□□ 1.75
H3F3A-203ENST00000366815 POTEDQ86YR6 584 aa25.39■■□□□ 1.66
H3F3A-203ENST00000366815 CCDC180Q9P1Z9 1646 aa24.81■■□□□ 1.56
H3F3A-203ENST00000366815 ABCC9O60706 1549 aa24.54■■□□□ 1.52
H3F3A-203ENST00000366815 MAPK8IP2Q13387 824 aaPredicted RBP23.86■■□□□ 1.41
H3F3A-203ENST00000366815 SCAF1Q9H7N4 1312 aaKnown RBP23.84■■□□□ 1.41
H3F3A-203ENST00000366815 DMRT2Q9Y5R5 561 aa23.69■■□□□ 1.38
H3F3A-203ENST00000366815 RB1CC1Q8TDY2 1594 aa23.48■■□□□ 1.35
H3F3A-203ENST00000366815 NACADO15069 1562 aa23.37■■□□□ 1.33
H3F3A-203ENST00000366815 PPP4R3CPQ6ZMV5 832 aa23.35■■□□□ 1.33
H3F3A-203ENST00000366815 DCAF8L2P0C7V8 631 aa23.15■■□□□ 1.3
H3F3A-203ENST00000366815 MYO15BQ96JP2 1530 aa23.14■■□□□ 1.3
H3F3A-203ENST00000366815 ZCCHC6Q5VYS8 1495 aaKnown RBP23.01■■□□□ 1.27
H3F3A-203ENST00000366815 UNC13AQ9UPW8 1703 aa23.01■■□□□ 1.27
H3F3A-203ENST00000366815 DCAF1Q9Y4B6 1507 aa22.92■■□□□ 1.26
H3F3A-203ENST00000366815 CNKSR2Q8WXI2 1034 aa22.91■■□□□ 1.26
H3F3A-203ENST00000366815 DCAF8L1A6NGE4 600 aa22.85■■□□□ 1.25
H3F3A-203ENST00000366815 DNAJC5BQ9UF47 199 aa22.84■■□□□ 1.25
H3F3A-203ENST00000366815 PABPN1Q86U42 306 aaKnown RBP eCLIP22.83■■□□□ 1.25
H3F3A-203ENST00000366815 BICRAQ9NZM4 1560 aa22.82■■□□□ 1.24
H3F3A-203ENST00000366815 HOXD11P31277 338 aaPredicted RBP22.81■■□□□ 1.24
H3F3A-203ENST00000366815 RNF216Q9NWF9 866 aaPredicted RBP22.68■■□□□ 1.22
H3F3A-203ENST00000366815 SCRIBQ14160 1630 aa22.57■■□□□ 1.2
H3F3A-203ENST00000366815 SHROOM4Q9ULL8 1493 aa22.52■■□□□ 1.2
H3F3A-203ENST00000366815 NCBP3Q53F19 620 aaKnown RBP22.51■■□□□ 1.19
H3F3A-203ENST00000366815 CACNB1Q02641 598 aaPredicted RBP22.41■■□□□ 1.18
H3F3A-203ENST00000366815 RNF39Q9H2S5 420 aa22.22■■□□□ 1.15
H3F3A-203ENST00000366815 EIF4G1Q04637 1599 aaKnown RBP22.21■■□□□ 1.15
H3F3A-203ENST00000366815 CC2D2AQ9P2K1 1620 aa22.21■■□□□ 1.15
H3F3A-203ENST00000366815 NPM3O75607 178 aaKnown RBP22.13■■□□□ 1.13
H3F3A-203ENST00000366815 CECR2Q9BXF3 1484 aa22.09■■□□□ 1.13
H3F3A-203ENST00000366815 KCNA4P22459 653 aa21.93■■□□□ 1.1
H3F3A-203ENST00000366815 C1QBPQ07021 282 aaKnown RBP21.93■■□□□ 1.1
H3F3A-203ENST00000366815 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.84■■□□□ 1.09
H3F3A-203ENST00000366815 SMARCA4P51532 1647 aa21.58■■□□□ 1.04
H3F3A-203ENST00000366815 NCAPD3P42695 1498 aa21.57■■□□□ 1.04
H3F3A-203ENST00000366815 ATAD2BQ9ULI0 1458 aa21.52■■□□□ 1.04
H3F3A-203ENST00000366815 BAZ1AQ9NRL2 1556 aaPredicted RBP21.48■■□□□ 1.03
H3F3A-203ENST00000366815 SMARCA2P51531 1590 aa21.48■■□□□ 1.03
H3F3A-203ENST00000366815 HMGXB3Q12766 1538 aa21.45■■□□□ 1.02
H3F3A-203ENST00000366815 PEG3Q9GZU2 1588 aa21.39■■□□□ 1.01
H3F3A-203ENST00000366815 MROH2BQ7Z745 1585 aa21.34■■□□□ 1.01
H3F3A-203ENST00000366815 BAZ1BQ9UIG0 1483 aaKnown RBP21.31■■□□□ 1
H3F3A-203ENST00000366815 U3KPZ7 1027 aaPredicted RBP21.3■■□□□ 1
H3F3A-203ENST00000366815 NESP48681 1621 aa21.15■□□□□ 0.98
H3F3A-203ENST00000366815 ERCC6Q03468 1493 aa21.14■□□□□ 0.98
H3F3A-203ENST00000366815 WIZO95785 1651 aa21.11■□□□□ 0.97
H3F3A-203ENST00000366815 CUX2O14529 1486 aa21.09■□□□□ 0.97
H3F3A-203ENST00000366815 SLC4A2P04920 1241 aa21.09■□□□□ 0.97
H3F3A-203ENST00000366815 LAMC3Q9Y6N6 1575 aa21.06■□□□□ 0.96
H3F3A-203ENST00000366815 CAPN15O75808 1086 aa21.04■□□□□ 0.96
H3F3A-203ENST00000366815 SPINK5Q9NQ38 1064 aaPredicted RBP21.01■□□□□ 0.95
H3F3A-203ENST00000366815 RSF1Q96T23 1441 aaPredicted RBP20.95■□□□□ 0.95
H3F3A-203ENST00000366815 THOC2Q8NI27 1593 aaKnown RBP20.95■□□□□ 0.94
H3F3A-203ENST00000366815 SLC4A1APQ9BWU0 796 aaKnown RBP20.95■□□□□ 0.94
H3F3A-203ENST00000366815 KIF21AQ7Z4S6 1674 aa20.93■□□□□ 0.94
H3F3A-203ENST00000366815 CADPSQ9ULU8 1353 aa20.89■□□□□ 0.93
H3F3A-203ENST00000366815 PDS5BQ9NTI5 1447 aa20.88■□□□□ 0.93
H3F3A-203ENST00000366815 TOP2AP11388 1531 aaKnown RBP20.85■□□□□ 0.93
H3F3A-203ENST00000366815 DNAJC5Q9H3Z4 198 aa20.85■□□□□ 0.93
H3F3A-203ENST00000366815 DSG3P32926 999 aa20.83■□□□□ 0.93
H3F3A-203ENST00000366815 APLP2Q06481 763 aa20.8■□□□□ 0.92
H3F3A-203ENST00000366815 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.77■□□□□ 0.92
H3F3A-203ENST00000366815 HNRNPUL2Q1KMD3 747 aaKnown RBP20.77■□□□□ 0.92
H3F3A-203ENST00000366815 CFTRP13569 1480 aa20.72■□□□□ 0.91
H3F3A-203ENST00000366815 MRC2Q9UBG0 1479 aa20.72■□□□□ 0.91
H3F3A-203ENST00000366815 TRHP20396 242 aaPredicted RBP20.71■□□□□ 0.91
H3F3A-203ENST00000366815 WDR62O43379 1518 aa20.68■□□□□ 0.9
H3F3A-203ENST00000366815 FANCD2Q9BXW9 1451 aa20.67■□□□□ 0.9
H3F3A-203ENST00000366815 CEP164Q9UPV0 1460 aa20.67■□□□□ 0.9
H3F3A-203ENST00000366815 SAMD1Q6SPF0 538 aaPredicted RBP20.64■□□□□ 0.89
H3F3A-203ENST00000366815 ZNF219Q9P2Y4 722 aaPredicted RBP20.64■□□□□ 0.89
H3F3A-203ENST00000366815 PRDM2Q13029 1718 aa20.59■□□□□ 0.89
H3F3A-203ENST00000366815 CCDC88BA6NC98 1476 aa20.59■□□□□ 0.89
H3F3A-203ENST00000366815 ABCB7O75027 752 aa20.53■□□□□ 0.88
H3F3A-203ENST00000366815 URB2Q14146 1524 aaKnown RBP20.5■□□□□ 0.87
H3F3A-203ENST00000366815 MYCNP04198 464 aaPredicted RBP20.48■□□□□ 0.87
H3F3A-203ENST00000366815 EHMT2Q96KQ7 1210 aa20.4■□□□□ 0.86
H3F3A-203ENST00000366815 TOPBP1Q92547 1522 aa20.32■□□□□ 0.84
H3F3A-203ENST00000366815 FOXD4L1Q9NU39 408 aa20.28■□□□□ 0.84
H3F3A-203ENST00000366815 ABCC8Q09428 1581 aa20.26■□□□□ 0.83
H3F3A-203ENST00000366815 DNMBPQ6XZF7 1577 aa20.26■□□□□ 0.83
H3F3A-203ENST00000366815 IFT140Q96RY7 1462 aa20.24■□□□□ 0.83
H3F3A-203ENST00000366815 ZNF608Q9ULD9 1512 aaPredicted RBP20.2■□□□□ 0.82
H3F3A-203ENST00000366815 ZBTB22O15209 634 aa20.15■□□□□ 0.82
H3F3A-203ENST00000366815 TARBP1Q13395 1621 aaKnown RBP20.15■□□□□ 0.82
H3F3A-203ENST00000366815 EIF4G3O43432 1585 aaKnown RBP20.13■□□□□ 0.81
H3F3A-203ENST00000366815 POLA2Q14181 598 aa20.13■□□□□ 0.81
H3F3A-203ENST00000366815 POLA1P09884 1462 aaPredicted RBP20.11■□□□□ 0.81
H3F3A-203ENST00000366815 CSRNP3Q8WYN3 585 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms