RNA–Protein interactions for RNA: ENST00000366740.5

MRPL55-213, Transcript of mitochondrial ribosomal protein L55, humanhuman

APPRIS P1 TSL 2 BASIC

Gene MRPL55, Length 644 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55-213ENST00000366740 NISCHQ9Y2I1 1504 aa29.83■■■□□ 2.37
MRPL55-213ENST00000366740 CCDC180Q9P1Z9 1646 aa27.07■■□□□ 1.92
MRPL55-213ENST00000366740 ABCC9O60706 1549 aa26.99■■□□□ 1.91
MRPL55-213ENST00000366740 RB1CC1Q8TDY2 1594 aa25.73■■□□□ 1.71
MRPL55-213ENST00000366740 NACADO15069 1562 aa25.49■■□□□ 1.67
MRPL55-213ENST00000366740 DNAJC5BQ9UF47 199 aa25.43■■□□□ 1.66
MRPL55-213ENST00000366740 UNC13AQ9UPW8 1703 aa25.4■■□□□ 1.66
MRPL55-213ENST00000366740 MYO15BQ96JP2 1530 aa25.1■■□□□ 1.61
MRPL55-213ENST00000366740 BICRAQ9NZM4 1560 aa25.02■■□□□ 1.6
MRPL55-213ENST00000366740 DCAF8L2P0C7V8 631 aa24.97■■□□□ 1.59
MRPL55-213ENST00000366740 PABPN1Q86U42 306 aaKnown RBP eCLIP24.96■■□□□ 1.59
MRPL55-213ENST00000366740 ZCCHC6Q5VYS8 1495 aaKnown RBP24.7■■□□□ 1.55
MRPL55-213ENST00000366740 DCAF1Q9Y4B6 1507 aa24.7■■□□□ 1.54
MRPL55-213ENST00000366740 SHROOM4Q9ULL8 1493 aa24.65■■□□□ 1.54
MRPL55-213ENST00000366740 CC2D2AQ9P2K1 1620 aa24.5■■□□□ 1.51
MRPL55-213ENST00000366740 SCRIBQ14160 1630 aa24.49■■□□□ 1.51
MRPL55-213ENST00000366740 EIF4G1Q04637 1599 aaKnown RBP24.38■■□□□ 1.49
MRPL55-213ENST00000366740 CECR2Q9BXF3 1484 aa24.34■■□□□ 1.49
MRPL55-213ENST00000366740 DNAJC5Q9H3Z4 198 aa23.52■■□□□ 1.36
MRPL55-213ENST00000366740 NCAPD3P42695 1498 aa23.46■■□□□ 1.35
MRPL55-213ENST00000366740 CUX2O14529 1486 aa23.43■■□□□ 1.34
MRPL55-213ENST00000366740 SMARCA4P51532 1647 aa23.4■■□□□ 1.34
MRPL55-213ENST00000366740 HMGXB3Q12766 1538 aa23.37■■□□□ 1.33
MRPL55-213ENST00000366740 ATAD2BQ9ULI0 1458 aa23.35■■□□□ 1.33
MRPL55-213ENST00000366740 SMARCA2P51531 1590 aa23.34■■□□□ 1.33
MRPL55-213ENST00000366740 ERCC6Q03468 1493 aa23.3■■□□□ 1.32
MRPL55-213ENST00000366740 BAZ1AQ9NRL2 1556 aaPredicted RBP23.2■■□□□ 1.3
MRPL55-213ENST00000366740 PEG3Q9GZU2 1588 aa23.19■■□□□ 1.3
MRPL55-213ENST00000366740 NESP48681 1621 aa23.15■■□□□ 1.3
MRPL55-213ENST00000366740 THOC2Q8NI27 1593 aaKnown RBP23.13■■□□□ 1.29
MRPL55-213ENST00000366740 BAZ1BQ9UIG0 1483 aaKnown RBP23.11■■□□□ 1.29
MRPL55-213ENST00000366740 LAMC3Q9Y6N6 1575 aa23.07■■□□□ 1.28
MRPL55-213ENST00000366740 KIF21AQ7Z4S6 1674 aa23.06■■□□□ 1.28
MRPL55-213ENST00000366740 MROH2BQ7Z745 1585 aa22.97■■□□□ 1.27
MRPL55-213ENST00000366740 PDS5BQ9NTI5 1447 aa22.8■■□□□ 1.24
MRPL55-213ENST00000366740 WIZO95785 1651 aa22.77■■□□□ 1.24
MRPL55-213ENST00000366740 WDR62O43379 1518 aa22.7■■□□□ 1.22
MRPL55-213ENST00000366740 CADPSQ9ULU8 1353 aa22.68■■□□□ 1.22
MRPL55-213ENST00000366740 MRC2Q9UBG0 1479 aa22.66■■□□□ 1.22
MRPL55-213ENST00000366740 PRDM2Q13029 1718 aa22.54■■□□□ 1.2
MRPL55-213ENST00000366740 CEP164Q9UPV0 1460 aa22.53■■□□□ 1.2
MRPL55-213ENST00000366740 FANCD2Q9BXW9 1451 aa22.47■■□□□ 1.19
MRPL55-213ENST00000366740 CFTRP13569 1480 aa22.44■■□□□ 1.18
MRPL55-213ENST00000366740 TOP2AP11388 1531 aaKnown RBP22.42■■□□□ 1.18
MRPL55-213ENST00000366740 RSF1Q96T23 1441 aaPredicted RBP22.35■■□□□ 1.17
MRPL55-213ENST00000366740 URB2Q14146 1524 aaKnown RBP22.33■■□□□ 1.17
MRPL55-213ENST00000366740 TRIM41Q8WV44 630 aa22.3■■□□□ 1.16
MRPL55-213ENST00000366740 OSCARQ8IYS5 282 aa22.15■■□□□ 1.14
MRPL55-213ENST00000366740 RIMBP3CA6NJZ7 1639 aa22.12■■□□□ 1.13
MRPL55-213ENST00000366740 RIMBP3BA6NNM3 1639 aa22.12■■□□□ 1.13
MRPL55-213ENST00000366740 RIMBP3Q9UFD9 1639 aa22.12■■□□□ 1.13
MRPL55-213ENST00000366740 CCDC88BA6NC98 1476 aa22.09■■□□□ 1.13
MRPL55-213ENST00000366740 IFT140Q96RY7 1462 aa22.08■■□□□ 1.12
MRPL55-213ENST00000366740 TOPBP1Q92547 1522 aa22.06■■□□□ 1.12
MRPL55-213ENST00000366740 EIF4G3O43432 1585 aaKnown RBP22.05■■□□□ 1.12
MRPL55-213ENST00000366740 ZNF608Q9ULD9 1512 aaPredicted RBP22.05■■□□□ 1.12
MRPL55-213ENST00000366740 CHD1O14646 1710 aa22.02■■□□□ 1.12
MRPL55-213ENST00000366740 DNMBPQ6XZF7 1577 aa22.01■■□□□ 1.11
MRPL55-213ENST00000366740 ABCC8Q09428 1581 aa21.99■■□□□ 1.11
MRPL55-213ENST00000366740 TARBP1Q13395 1621 aaKnown RBP21.97■■□□□ 1.11
MRPL55-213ENST00000366740 ARHGEF11O15085 1522 aa21.96■■□□□ 1.11
MRPL55-213ENST00000366740 POLA1P09884 1462 aaPredicted RBP21.8■■□□□ 1.08
MRPL55-213ENST00000366740 AQRO60306 1485 aaKnown RBP eCLIP21.77■■□□□ 1.088e-7■■■■■ 27.9
MRPL55-213ENST00000366740 WDR97A6NE52 1622 aa21.77■■□□□ 1.08
MRPL55-213ENST00000366740 ARAP1Q96P48 1450 aa21.71■■□□□ 1.07
MRPL55-213ENST00000366740 RAD54L2Q9Y4B4 1467 aa21.67■■□□□ 1.06
MRPL55-213ENST00000366740 CLASP1Q7Z460 1538 aa21.65■■□□□ 1.06
MRPL55-213ENST00000366740 PBRM1Q86U86 1689 aa21.64■■□□□ 1.05
MRPL55-213ENST00000366740 FGD5Q6ZNL6 1462 aa21.63■■□□□ 1.05
MRPL55-213ENST00000366740 SOGA1O94964 1423 aa21.62■■□□□ 1.05
MRPL55-213ENST00000366740 CYB5RLQ6IPT4 315 aa21.61■■□□□ 1.05
MRPL55-213ENST00000366740 CUX1P39880 1505 aa21.6■■□□□ 1.05
MRPL55-213ENST00000366740 SNAPC4Q5SXM2 1469 aa21.6■■□□□ 1.05
MRPL55-213ENST00000366740 SYNJ1O43426 1573 aa21.59■■□□□ 1.05
MRPL55-213ENST00000366740 MAGI1Q96QZ7 1491 aaPredicted RBP21.58■■□□□ 1.04
MRPL55-213ENST00000366740 TDRD9Q8NDG6 1382 aaKnown RBP21.56■■□□□ 1.04
MRPL55-213ENST00000366740 FBLN2P98095 1184 aa21.55■■□□□ 1.04
MRPL55-213ENST00000366740 GRIN2BQ13224 1484 aa21.51■■□□□ 1.03
MRPL55-213ENST00000366740 ABCA5Q8WWZ7 1642 aa21.49■■□□□ 1.03
MRPL55-213ENST00000366740 SYNJ2O15056 1496 aa21.48■■□□□ 1.03
MRPL55-213ENST00000366740 TRHP20396 242 aaPredicted RBP21.42■■□□□ 1.02
MRPL55-213ENST00000366740 GAPVD1Q14C86 1478 aa21.4■■□□□ 1.02
MRPL55-213ENST00000366740 ABCA10Q8WWZ4 1543 aa21.39■■□□□ 1.02
MRPL55-213ENST00000366740 CHMP7Q8WUX9 453 aaPredicted RBP21.39■■□□□ 1.01
MRPL55-213ENST00000366740 BIVM-ERCC5R4GMW8 1640 aa21.34■■□□□ 1.01
MRPL55-213ENST00000366740 ADAMTS12P58397 1594 aa21.31■■□□□ 1
MRPL55-213ENST00000366740 SHROOM2Q13796 1616 aa21.27■■□□□ 1
MRPL55-213ENST00000366740 TOP2BQ02880 1626 aa21.26■□□□□ 0.99
MRPL55-213ENST00000366740 CEP170Q5SW79 1584 aa21.26■□□□□ 0.99
MRPL55-213ENST00000366740 ERCC6L2Q5T890 1561 aa21.26■□□□□ 0.99
MRPL55-213ENST00000366740 GRIN2AQ12879 1464 aa21.26■□□□□ 0.99
MRPL55-213ENST00000366740 NUP160Q12769 1436 aa21.2■□□□□ 0.98
MRPL55-213ENST00000366740 KIF13AQ9H1H9 1805 aa21.19■□□□□ 0.98
MRPL55-213ENST00000366740 WRNQ14191 1432 aaPredicted RBP eCLIP21.18■□□□□ 0.98
MRPL55-213ENST00000366740 ERICH3Q5RHP9 1530 aa21.15■□□□□ 0.98
MRPL55-213ENST00000366740 FHAD1B1AJZ9 1412 aa21.11■□□□□ 0.97
MRPL55-213ENST00000366740 RUSC2Q8N2Y8 1516 aa21.04■□□□□ 0.96
MRPL55-213ENST00000366740 SUPT5HO00267 1087 aaKnown RBP21.02■□□□□ 0.96
MRPL55-213ENST00000366740 AEBP2Q6ZN18 517 aaPredicted RBP20.94■□□□□ 0.94
MRPL55-213ENST00000366740 PRG4Q92954 1404 aaPredicted RBP20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms