RNA–Protein interactions for RNA: ENST00000366159.8

TNFRSF1A-202, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,339 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-202ENST00000366159 NISCHQ9Y2I1 1504 aa34.08■■■■□ 3.05
TNFRSF1A-202ENST00000366159 CCDC180Q9P1Z9 1646 aa30.46■■■□□ 2.47
TNFRSF1A-202ENST00000366159 ABCC9O60706 1549 aa30.14■■■□□ 2.42
TNFRSF1A-202ENST00000366159 RB1CC1Q8TDY2 1594 aa28.84■■■□□ 2.21
TNFRSF1A-202ENST00000366159 NACADO15069 1562 aa28.74■■■□□ 2.19
TNFRSF1A-202ENST00000366159 DCAF8L2P0C7V8 631 aa28.51■■■□□ 2.15
TNFRSF1A-202ENST00000366159 MYO15BQ96JP2 1530 aa28.5■■■□□ 2.15
TNFRSF1A-202ENST00000366159 ZCCHC6Q5VYS8 1495 aaKnown RBP28.31■■■□□ 2.12
TNFRSF1A-202ENST00000366159 UNC13AQ9UPW8 1703 aa28.21■■■□□ 2.11
TNFRSF1A-202ENST00000366159 DCAF1Q9Y4B6 1507 aa28.21■■■□□ 2.11
TNFRSF1A-202ENST00000366159 DNAJC5BQ9UF47 199 aa28.14■■■□□ 2.09
TNFRSF1A-202ENST00000366159 PABPN1Q86U42 306 aaKnown RBP eCLIP28.11■■■□□ 2.09
TNFRSF1A-202ENST00000366159 BICRAQ9NZM4 1560 aa28.06■■■□□ 2.08
TNFRSF1A-202ENST00000366159 SCRIBQ14160 1630 aa27.71■■■□□ 2.03
TNFRSF1A-202ENST00000366159 SHROOM4Q9ULL8 1493 aa27.69■■■□□ 2.02
TNFRSF1A-202ENST00000366159 EIF4G1Q04637 1599 aaKnown RBP27.3■■□□□ 1.96
TNFRSF1A-202ENST00000366159 CC2D2AQ9P2K1 1620 aa27.28■■□□□ 1.96
TNFRSF1A-202ENST00000366159 CECR2Q9BXF3 1484 aa27.14■■□□□ 1.94
TNFRSF1A-202ENST00000366159 NCAPD3P42695 1498 aa26.56■■□□□ 1.84
TNFRSF1A-202ENST00000366159 SMARCA4P51532 1647 aa26.51■■□□□ 1.83
TNFRSF1A-202ENST00000366159 ATAD2BQ9ULI0 1458 aa26.48■■□□□ 1.83
TNFRSF1A-202ENST00000366159 BAZ1AQ9NRL2 1556 aaPredicted RBP26.41■■□□□ 1.82
TNFRSF1A-202ENST00000366159 SMARCA2P51531 1590 aa26.4■■□□□ 1.82
TNFRSF1A-202ENST00000366159 HMGXB3Q12766 1538 aa26.36■■□□□ 1.81
TNFRSF1A-202ENST00000366159 PEG3Q9GZU2 1588 aa26.31■■□□□ 1.8
TNFRSF1A-202ENST00000366159 MROH2BQ7Z745 1585 aa26.26■■□□□ 1.79
TNFRSF1A-202ENST00000366159 BAZ1BQ9UIG0 1483 aaKnown RBP26.19■■□□□ 1.78
TNFRSF1A-202ENST00000366159 NESP48681 1621 aa26■■□□□ 1.75
TNFRSF1A-202ENST00000366159 ERCC6Q03468 1493 aa25.96■■□□□ 1.75
TNFRSF1A-202ENST00000366159 WIZO95785 1651 aa25.94■■□□□ 1.74
TNFRSF1A-202ENST00000366159 CUX2O14529 1486 aa25.91■■□□□ 1.74
TNFRSF1A-202ENST00000366159 LAMC3Q9Y6N6 1575 aa25.88■■□□□ 1.73
TNFRSF1A-202ENST00000366159 RSF1Q96T23 1441 aaPredicted RBP25.82■■□□□ 1.72
TNFRSF1A-202ENST00000366159 CADPSQ9ULU8 1353 aa25.73■■□□□ 1.71
TNFRSF1A-202ENST00000366159 THOC2Q8NI27 1593 aaKnown RBP25.71■■□□□ 1.71
TNFRSF1A-202ENST00000366159 PDS5BQ9NTI5 1447 aa25.7■■□□□ 1.7
TNFRSF1A-202ENST00000366159 KIF21AQ7Z4S6 1674 aa25.66■■□□□ 1.7
TNFRSF1A-202ENST00000366159 TOP2AP11388 1531 aaKnown RBP25.62■■□□□ 1.69
TNFRSF1A-202ENST00000366159 DNAJC5Q9H3Z4 198 aa25.62■■□□□ 1.69
TNFRSF1A-202ENST00000366159 CFTRP13569 1480 aa25.51■■□□□ 1.67
TNFRSF1A-202ENST00000366159 MRC2Q9UBG0 1479 aa25.45■■□□□ 1.67
TNFRSF1A-202ENST00000366159 WDR62O43379 1518 aa25.41■■□□□ 1.66
TNFRSF1A-202ENST00000366159 FANCD2Q9BXW9 1451 aa25.4■■□□□ 1.66
TNFRSF1A-202ENST00000366159 CEP164Q9UPV0 1460 aa25.39■■□□□ 1.65
TNFRSF1A-202ENST00000366159 CCDC88BA6NC98 1476 aa25.35■■□□□ 1.65
TNFRSF1A-202ENST00000366159 PRDM2Q13029 1718 aa25.23■■□□□ 1.63
TNFRSF1A-202ENST00000366159 URB2Q14146 1524 aaKnown RBP25.21■■□□□ 1.63
TNFRSF1A-202ENST00000366159 TOPBP1Q92547 1522 aa24.97■■□□□ 1.59
TNFRSF1A-202ENST00000366159 ABCC8Q09428 1581 aa24.94■■□□□ 1.58
TNFRSF1A-202ENST00000366159 IFT140Q96RY7 1462 aa24.9■■□□□ 1.58
TNFRSF1A-202ENST00000366159 DNMBPQ6XZF7 1577 aa24.9■■□□□ 1.58
TNFRSF1A-202ENST00000366159 ZNF608Q9ULD9 1512 aaPredicted RBP24.84■■□□□ 1.57
TNFRSF1A-202ENST00000366159 SUPT5HO00267 1087 aaKnown RBP24.76■■□□□ 1.55
TNFRSF1A-202ENST00000366159 TARBP1Q13395 1621 aaKnown RBP24.76■■□□□ 1.55
TNFRSF1A-202ENST00000366159 OSCARQ8IYS5 282 aa24.75■■□□□ 1.55
TNFRSF1A-202ENST00000366159 POLA1P09884 1462 aaPredicted RBP24.74■■□□□ 1.55
TNFRSF1A-202ENST00000366159 EIF4G3O43432 1585 aaKnown RBP24.7■■□□□ 1.54
TNFRSF1A-202ENST00000366159 CUX1P39880 1505 aa24.65■■□□□ 1.54
TNFRSF1A-202ENST00000366159 AQRO60306 1485 aaKnown RBP eCLIP24.65■■□□□ 1.541e-6■■■■■ 32
TNFRSF1A-202ENST00000366159 RAD54L2Q9Y4B4 1467 aa24.63■■□□□ 1.53
TNFRSF1A-202ENST00000366159 SOGA1O94964 1423 aa24.62■■□□□ 1.53
TNFRSF1A-202ENST00000366159 FGD5Q6ZNL6 1462 aa24.6■■□□□ 1.53
TNFRSF1A-202ENST00000366159 TDRD9Q8NDG6 1382 aaKnown RBP24.52■■□□□ 1.52
TNFRSF1A-202ENST00000366159 WDR97A6NE52 1622 aa24.52■■□□□ 1.52
TNFRSF1A-202ENST00000366159 TRIM41Q8WV44 630 aa24.47■■□□□ 1.51
TNFRSF1A-202ENST00000366159 CHD1O14646 1710 aa24.45■■□□□ 1.5
TNFRSF1A-202ENST00000366159 RIMBP3CA6NJZ7 1639 aa24.41■■□□□ 1.5
TNFRSF1A-202ENST00000366159 RIMBP3BA6NNM3 1639 aa24.41■■□□□ 1.5
TNFRSF1A-202ENST00000366159 RIMBP3Q9UFD9 1639 aa24.41■■□□□ 1.5
TNFRSF1A-202ENST00000366159 SNAPC4Q5SXM2 1469 aa24.38■■□□□ 1.49
TNFRSF1A-202ENST00000366159 ABCA10Q8WWZ4 1543 aa24.37■■□□□ 1.49
TNFRSF1A-202ENST00000366159 GRIN2BQ13224 1484 aa24.36■■□□□ 1.49
TNFRSF1A-202ENST00000366159 ARHGEF11O15085 1522 aa24.36■■□□□ 1.49
TNFRSF1A-202ENST00000366159 MAGI1Q96QZ7 1491 aaPredicted RBP24.35■■□□□ 1.49
TNFRSF1A-202ENST00000366159 FBLN2P98095 1184 aa24.34■■□□□ 1.49
TNFRSF1A-202ENST00000366159 TOP2BQ02880 1626 aa24.33■■□□□ 1.48
TNFRSF1A-202ENST00000366159 BIVM-ERCC5R4GMW8 1640 aa24.33■■□□□ 1.48
TNFRSF1A-202ENST00000366159 GAPVD1Q14C86 1478 aa24.32■■□□□ 1.48
TNFRSF1A-202ENST00000366159 AEBP2Q6ZN18 517 aaPredicted RBP24.32■■□□□ 1.48
TNFRSF1A-202ENST00000366159 WRNQ14191 1432 aaPredicted RBP eCLIP24.31■■□□□ 1.48
TNFRSF1A-202ENST00000366159 ABCA5Q8WWZ7 1642 aa24.3■■□□□ 1.48
TNFRSF1A-202ENST00000366159 SYNJ1O43426 1573 aa24.3■■□□□ 1.48
TNFRSF1A-202ENST00000366159 PBRM1Q86U86 1689 aa24.27■■□□□ 1.48
TNFRSF1A-202ENST00000366159 SYNJ2O15056 1496 aa24.26■■□□□ 1.47
TNFRSF1A-202ENST00000366159 CLASP1Q7Z460 1538 aa24.24■■□□□ 1.47
TNFRSF1A-202ENST00000366159 CHMP7Q8WUX9 453 aaPredicted RBP24.24■■□□□ 1.47
TNFRSF1A-202ENST00000366159 CHIC1Q5VXU3 224 aa24.23■■□□□ 1.47
TNFRSF1A-202ENST00000366159 ARAP1Q96P48 1450 aa24.15■■□□□ 1.46
TNFRSF1A-202ENST00000366159 CYB5RLQ6IPT4 315 aa24.12■■□□□ 1.45
TNFRSF1A-202ENST00000366159 ADAMTS12P58397 1594 aa24.08■■□□□ 1.45
TNFRSF1A-202ENST00000366159 GRIN2AQ12879 1464 aa24.06■■□□□ 1.44
TNFRSF1A-202ENST00000366159 ERICH3Q5RHP9 1530 aa24.06■■□□□ 1.44
TNFRSF1A-202ENST00000366159 FHAD1B1AJZ9 1412 aa24.03■■□□□ 1.44
TNFRSF1A-202ENST00000366159 NUP160Q12769 1436 aa24■■□□□ 1.43
TNFRSF1A-202ENST00000366159 CEP170Q5SW79 1584 aa23.98■■□□□ 1.43
TNFRSF1A-202ENST00000366159 SHROOM2Q13796 1616 aa23.87■■□□□ 1.41
TNFRSF1A-202ENST00000366159 ERCC6L2Q5T890 1561 aa23.87■■□□□ 1.41
TNFRSF1A-202ENST00000366159 IGF1RP08069 1367 aa23.84■■□□□ 1.41
TNFRSF1A-202ENST00000366159 KIF27Q86VH2 1401 aa23.81■■□□□ 1.4
TNFRSF1A-202ENST00000366159 CUL7Q14999 1698 aa23.74■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms