RNA–Protein interactions for RNA: ENST00000364447.1

RNU4-59P-201, Transcript of RNA, U4 small nuclear 59, pseudogene, humanhuman

BASIC

Gene RNU4-59P, Length 116 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-59P-201ENST00000364447 NISCHQ9Y2I1 1504 aa20.44■□□□□ 0.86
RNU4-59P-201ENST00000364447 CCDC180Q9P1Z9 1646 aa18.4■□□□□ 0.54
RNU4-59P-201ENST00000364447 ABCC9O60706 1549 aa18.33■□□□□ 0.52
RNU4-59P-201ENST00000364447 RB1CC1Q8TDY2 1594 aa17.49■□□□□ 0.39
RNU4-59P-201ENST00000364447 NACADO15069 1562 aa17.35■□□□□ 0.37
RNU4-59P-201ENST00000364447 DCAF8L2P0C7V8 631 aa17.25■□□□□ 0.35
RNU4-59P-201ENST00000364447 UNC13AQ9UPW8 1703 aa17.11■□□□□ 0.33
RNU4-59P-201ENST00000364447 MYO15BQ96JP2 1530 aa17.1■□□□□ 0.33
RNU4-59P-201ENST00000364447 DNAJC5BQ9UF47 199 aa17.08■□□□□ 0.32
RNU4-59P-201ENST00000364447 PABPN1Q86U42 306 aaKnown RBP eCLIP17.03■□□□□ 0.32
RNU4-59P-201ENST00000364447 ZCCHC6Q5VYS8 1495 aaKnown RBP16.95■□□□□ 0.3
RNU4-59P-201ENST00000364447 BICRAQ9NZM4 1560 aa16.93■□□□□ 0.3
RNU4-59P-201ENST00000364447 DCAF1Q9Y4B6 1507 aa16.89■□□□□ 0.29
RNU4-59P-201ENST00000364447 SCRIBQ14160 1630 aa16.75■□□□□ 0.27
RNU4-59P-201ENST00000364447 SHROOM4Q9ULL8 1493 aa16.73■□□□□ 0.27
RNU4-59P-201ENST00000364447 CC2D2AQ9P2K1 1620 aa16.56■□□□□ 0.24
RNU4-59P-201ENST00000364447 EIF4G1Q04637 1599 aaKnown RBP16.53■□□□□ 0.24
RNU4-59P-201ENST00000364447 CECR2Q9BXF3 1484 aa16.5■□□□□ 0.23
RNU4-59P-201ENST00000364447 SMARCA4P51532 1647 aa15.97■□□□□ 0.15
RNU4-59P-201ENST00000364447 NCAPD3P42695 1498 aa15.97■□□□□ 0.15
RNU4-59P-201ENST00000364447 ATAD2BQ9ULI0 1458 aa15.94■□□□□ 0.14
RNU4-59P-201ENST00000364447 SMARCA2P51531 1590 aa15.94■□□□□ 0.14
RNU4-59P-201ENST00000364447 HMGXB3Q12766 1538 aa15.91■□□□□ 0.14
RNU4-59P-201ENST00000364447 BAZ1AQ9NRL2 1556 aaPredicted RBP15.9■□□□□ 0.14
RNU4-59P-201ENST00000364447 ERCC6Q03468 1493 aa15.85■□□□□ 0.13
RNU4-59P-201ENST00000364447 BAZ1BQ9UIG0 1483 aaKnown RBP15.83■□□□□ 0.12
RNU4-59P-201ENST00000364447 PEG3Q9GZU2 1588 aa15.79■□□□□ 0.12
RNU4-59P-201ENST00000364447 CUX2O14529 1486 aa15.79■□□□□ 0.12
RNU4-59P-201ENST00000364447 MROH2BQ7Z745 1585 aa15.75■□□□□ 0.11
RNU4-59P-201ENST00000364447 NESP48681 1621 aa15.74■□□□□ 0.11
RNU4-59P-201ENST00000364447 DNAJC5Q9H3Z4 198 aa15.7■□□□□ 0.1
RNU4-59P-201ENST00000364447 LAMC3Q9Y6N6 1575 aa15.66■□□□□ 0.1
RNU4-59P-201ENST00000364447 THOC2Q8NI27 1593 aaKnown RBP15.6■□□□□ 0.09
RNU4-59P-201ENST00000364447 WIZO95785 1651 aa15.6■□□□□ 0.09
RNU4-59P-201ENST00000364447 KIF21AQ7Z4S6 1674 aa15.59■□□□□ 0.09
RNU4-59P-201ENST00000364447 PDS5BQ9NTI5 1447 aa15.55■□□□□ 0.08
RNU4-59P-201ENST00000364447 CADPSQ9ULU8 1353 aa15.49■□□□□ 0.07
RNU4-59P-201ENST00000364447 MRC2Q9UBG0 1479 aa15.43■□□□□ 0.06
RNU4-59P-201ENST00000364447 RSF1Q96T23 1441 aaPredicted RBP15.42■□□□□ 0.06
RNU4-59P-201ENST00000364447 TOP2AP11388 1531 aaKnown RBP15.4■□□□□ 0.06
RNU4-59P-201ENST00000364447 CEP164Q9UPV0 1460 aa15.39■□□□□ 0.05
RNU4-59P-201ENST00000364447 WDR62O43379 1518 aa15.38■□□□□ 0.05
RNU4-59P-201ENST00000364447 FANCD2Q9BXW9 1451 aa15.35■□□□□ 0.05
RNU4-59P-201ENST00000364447 CFTRP13569 1480 aa15.33■□□□□ 0.04
RNU4-59P-201ENST00000364447 PRDM2Q13029 1718 aa15.29■□□□□ 0.04
RNU4-59P-201ENST00000364447 URB2Q14146 1524 aaKnown RBP15.21■□□□□ 0.03
RNU4-59P-201ENST00000364447 CCDC88BA6NC98 1476 aa15.19■□□□□ 0.02
RNU4-59P-201ENST00000364447 TRIM41Q8WV44 630 aa15.07■□□□□ 0
RNU4-59P-201ENST00000364447 TOPBP1Q92547 1522 aa15.06■□□□□ 0
RNU4-59P-201ENST00000364447 IFT140Q96RY7 1462 aa15.05■□□□□ -0
RNU4-59P-201ENST00000364447 ABCC8Q09428 1581 aa15.04■□□□□ -0
RNU4-59P-201ENST00000364447 OSCARQ8IYS5 282 aa15.04■□□□□ -0
RNU4-59P-201ENST00000364447 DNMBPQ6XZF7 1577 aa15.02■□□□□ -0
RNU4-59P-201ENST00000364447 ZNF608Q9ULD9 1512 aaPredicted RBP15.02□□□□□ -0.01
RNU4-59P-201ENST00000364447 EIF4G3O43432 1585 aaKnown RBP14.98□□□□□ -0.01
RNU4-59P-201ENST00000364447 TARBP1Q13395 1621 aaKnown RBP14.93□□□□□ -0.02
RNU4-59P-201ENST00000364447 AEBP2Q6ZN18 517 aaPredicted RBP14.93□□□□□ -0.02
RNU4-59P-201ENST00000364447 POLA1P09884 1462 aaPredicted RBP14.9□□□□□ -0.02
RNU4-59P-201ENST00000364447 RIMBP3CA6NJZ7 1639 aa14.89□□□□□ -0.03
RNU4-59P-201ENST00000364447 RIMBP3BA6NNM3 1639 aa14.89□□□□□ -0.03
RNU4-59P-201ENST00000364447 RIMBP3Q9UFD9 1639 aa14.89□□□□□ -0.03
RNU4-59P-201ENST00000364447 CHD1O14646 1710 aa14.89□□□□□ -0.03
RNU4-59P-201ENST00000364447 AQRO60306 1485 aaKnown RBP eCLIP14.88□□□□□ -0.03
RNU4-59P-201ENST00000364447 RAD54L2Q9Y4B4 1467 aa14.83□□□□□ -0.03
RNU4-59P-201ENST00000364447 ARHGEF11O15085 1522 aa14.83□□□□□ -0.04
RNU4-59P-201ENST00000364447 SOGA1O94964 1423 aa14.83□□□□□ -0.04
RNU4-59P-201ENST00000364447 FGD5Q6ZNL6 1462 aa14.82□□□□□ -0.04
RNU4-59P-201ENST00000364447 CUX1P39880 1505 aa14.81□□□□□ -0.04
RNU4-59P-201ENST00000364447 WDR97A6NE52 1622 aa14.81□□□□□ -0.04
RNU4-59P-201ENST00000364447 FBLN2P98095 1184 aa14.8□□□□□ -0.04
RNU4-59P-201ENST00000364447 TDRD9Q8NDG6 1382 aaKnown RBP14.79□□□□□ -0.04
RNU4-59P-201ENST00000364447 SUPT5HO00267 1087 aaKnown RBP14.77□□□□□ -0.05
RNU4-59P-201ENST00000364447 SNAPC4Q5SXM2 1469 aa14.76□□□□□ -0.05
RNU4-59P-201ENST00000364447 MAGI1Q96QZ7 1491 aaPredicted RBP14.72□□□□□ -0.05
RNU4-59P-201ENST00000364447 PBRM1Q86U86 1689 aa14.71□□□□□ -0.05
RNU4-59P-201ENST00000364447 GRIN2BQ13224 1484 aa14.71□□□□□ -0.05
RNU4-59P-201ENST00000364447 SYNJ1O43426 1573 aa14.69□□□□□ -0.06
RNU4-59P-201ENST00000364447 CYB5RLQ6IPT4 315 aa14.69□□□□□ -0.06
RNU4-59P-201ENST00000364447 CHMP7Q8WUX9 453 aaPredicted RBP14.68□□□□□ -0.06
RNU4-59P-201ENST00000364447 ARAP1Q96P48 1450 aa14.68□□□□□ -0.06
RNU4-59P-201ENST00000364447 CLASP1Q7Z460 1538 aa14.66□□□□□ -0.06
RNU4-59P-201ENST00000364447 SYNJ2O15056 1496 aa14.66□□□□□ -0.06
RNU4-59P-201ENST00000364447 GAPVD1Q14C86 1478 aa14.66□□□□□ -0.06
RNU4-59P-201ENST00000364447 ABCA5Q8WWZ7 1642 aa14.65□□□□□ -0.06
RNU4-59P-201ENST00000364447 ABCA10Q8WWZ4 1543 aa14.64□□□□□ -0.07
RNU4-59P-201ENST00000364447 BIVM-ERCC5R4GMW8 1640 aa14.61□□□□□ -0.07
RNU4-59P-201ENST00000364447 WRNQ14191 1432 aaPredicted RBP eCLIP14.6□□□□□ -0.07
RNU4-59P-201ENST00000364447 TOP2BQ02880 1626 aa14.59□□□□□ -0.07
RNU4-59P-201ENST00000364447 TRHP20396 242 aaPredicted RBP14.55□□□□□ -0.08
RNU4-59P-201ENST00000364447 ADAMTS12P58397 1594 aa14.54□□□□□ -0.08
RNU4-59P-201ENST00000364447 GRIN2AQ12879 1464 aa14.52□□□□□ -0.08
RNU4-59P-201ENST00000364447 CEP170Q5SW79 1584 aa14.48□□□□□ -0.09
RNU4-59P-201ENST00000364447 ERICH3Q5RHP9 1530 aa14.48□□□□□ -0.09
RNU4-59P-201ENST00000364447 FHAD1B1AJZ9 1412 aa14.47□□□□□ -0.09
RNU4-59P-201ENST00000364447 NUP160Q12769 1436 aa14.45□□□□□ -0.1
RNU4-59P-201ENST00000364447 ERCC6L2Q5T890 1561 aa14.43□□□□□ -0.1
RNU4-59P-201ENST00000364447 SHROOM2Q13796 1616 aa14.42□□□□□ -0.1
RNU4-59P-201ENST00000364447 RUSC2Q8N2Y8 1516 aa14.34□□□□□ -0.11
RNU4-59P-201ENST00000364447 PRG4Q92954 1404 aaPredicted RBP14.32□□□□□ -0.12
RNU4-59P-201ENST00000364447 CUL7Q14999 1698 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms