RNA–Protein interactions for RNA: ENST00000362031.8

SNX6-201, Transcript of sorting nexin 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX6, Length 2,001 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-201ENST00000362031 NISCHQ9Y2I1 1504 aa25.4■■□□□ 1.66
SNX6-201ENST00000362031 CCDC180Q9P1Z9 1646 aa22.27■■□□□ 1.16
SNX6-201ENST00000362031 ABCC9O60706 1549 aa21.56■■□□□ 1.04
SNX6-201ENST00000362031 ZCCHC6Q5VYS8 1495 aaKnown RBP21.25■□□□□ 0.99
SNX6-201ENST00000362031 DCAF8L2P0C7V8 631 aa21.15■□□□□ 0.98
SNX6-201ENST00000362031 DCAF1Q9Y4B6 1507 aa20.95■□□□□ 0.94
SNX6-201ENST00000362031 NACADO15069 1562 aa20.86■□□□□ 0.93
SNX6-201ENST00000362031 MYO15BQ96JP2 1530 aa20.85■□□□□ 0.93
SNX6-201ENST00000362031 RB1CC1Q8TDY2 1594 aa20.78■□□□□ 0.92
SNX6-201ENST00000362031 SCRIBQ14160 1630 aa20.51■□□□□ 0.87
SNX6-201ENST00000362031 SHROOM4Q9ULL8 1493 aa20.49■□□□□ 0.87
SNX6-201ENST00000362031 UNC13AQ9UPW8 1703 aa20.42■□□□□ 0.86
SNX6-201ENST00000362031 PABPN1Q86U42 306 aaKnown RBP eCLIP20.29■□□□□ 0.84
SNX6-201ENST00000362031 BICRAQ9NZM4 1560 aa20.26■□□□□ 0.83
SNX6-201ENST00000362031 CECR2Q9BXF3 1484 aa19.84■□□□□ 0.77
SNX6-201ENST00000362031 MROH2BQ7Z745 1585 aa19.65■□□□□ 0.74
SNX6-201ENST00000362031 EIF4G1Q04637 1599 aaKnown RBP19.64■□□□□ 0.74
SNX6-201ENST00000362031 BAZ1AQ9NRL2 1556 aaPredicted RBP19.6■□□□□ 0.73
SNX6-201ENST00000362031 SMARCA4P51532 1647 aa19.6■□□□□ 0.73
SNX6-201ENST00000362031 RSF1Q96T23 1441 aaPredicted RBP19.57■□□□□ 0.72
SNX6-201ENST00000362031 DNAJC5BQ9UF47 199 aa19.51■□□□□ 0.71
SNX6-201ENST00000362031 SUPT5HO00267 1087 aaKnown RBP19.47■□□□□ 0.71
SNX6-201ENST00000362031 CC2D2AQ9P2K1 1620 aa19.47■□□□□ 0.71
SNX6-201ENST00000362031 WIZO95785 1651 aa19.45■□□□□ 0.7
SNX6-201ENST00000362031 ATAD2BQ9ULI0 1458 aa19.41■□□□□ 0.7
SNX6-201ENST00000362031 PEG3Q9GZU2 1588 aa19.37■□□□□ 0.69
SNX6-201ENST00000362031 SMARCA2P51531 1590 aa19.32■□□□□ 0.68
SNX6-201ENST00000362031 NCAPD3P42695 1498 aa19.3■□□□□ 0.68
SNX6-201ENST00000362031 BAZ1BQ9UIG0 1483 aaKnown RBP19.24■□□□□ 0.67
SNX6-201ENST00000362031 HMGXB3Q12766 1538 aa19.2■□□□□ 0.66
SNX6-201ENST00000362031 TOP2AP11388 1531 aaKnown RBP19.19■□□□□ 0.66
SNX6-201ENST00000362031 CCDC88BA6NC98 1476 aa19.04■□□□□ 0.64
SNX6-201ENST00000362031 NESP48681 1621 aa18.82■□□□□ 0.6
SNX6-201ENST00000362031 CADPSQ9ULU8 1353 aa18.78■□□□□ 0.6
SNX6-201ENST00000362031 CFTRP13569 1480 aa18.76■□□□□ 0.59
SNX6-201ENST00000362031 LAMC3Q9Y6N6 1575 aa18.67■□□□□ 0.58
SNX6-201ENST00000362031 FANCD2Q9BXW9 1451 aa18.56■□□□□ 0.56
SNX6-201ENST00000362031 PRDM2Q13029 1718 aa18.56■□□□□ 0.56
SNX6-201ENST00000362031 PDS5BQ9NTI5 1447 aa18.54■□□□□ 0.56
SNX6-201ENST00000362031 KIF21AQ7Z4S6 1674 aa18.53■□□□□ 0.56
SNX6-201ENST00000362031 ABCC8Q09428 1581 aa18.52■□□□□ 0.55
SNX6-201ENST00000362031 CEP164Q9UPV0 1460 aa18.47■□□□□ 0.55
SNX6-201ENST00000362031 ERCC6Q03468 1493 aa18.46■□□□□ 0.55
SNX6-201ENST00000362031 CHIC1Q5VXU3 224 aa18.42■□□□□ 0.54
SNX6-201ENST00000362031 URB2Q14146 1524 aaKnown RBP18.4■□□□□ 0.54
SNX6-201ENST00000362031 WRNQ14191 1432 aaPredicted RBP eCLIP18.39■□□□□ 0.54
SNX6-201ENST00000362031 CUX1P39880 1505 aa18.39■□□□□ 0.53
SNX6-201ENST00000362031 SYNJ1O43426 1573 aa18.37■□□□□ 0.53
SNX6-201ENST00000362031 MRC2Q9UBG0 1479 aa18.35■□□□□ 0.53
SNX6-201ENST00000362031 THOC2Q8NI27 1593 aaKnown RBP18.34■□□□□ 0.53
SNX6-201ENST00000362031 TOPBP1Q92547 1522 aa18.32■□□□□ 0.52
SNX6-201ENST00000362031 DNMBPQ6XZF7 1577 aa18.29■□□□□ 0.52
SNX6-201ENST00000362031 TRIM41Q8WV44 630 aa18.29■□□□□ 0.52
SNX6-201ENST00000362031 TOP2BQ02880 1626 aa18.29■□□□□ 0.52
SNX6-201ENST00000362031 WDR62O43379 1518 aa18.28■□□□□ 0.52
SNX6-201ENST00000362031 BIVM-ERCC5R4GMW8 1640 aa18.26■□□□□ 0.51
SNX6-201ENST00000362031 FGD5Q6ZNL6 1462 aa18.23■□□□□ 0.51
SNX6-201ENST00000362031 POLA1P09884 1462 aaPredicted RBP18.22■□□□□ 0.51
SNX6-201ENST00000362031 CUX2O14529 1486 aa18.19■□□□□ 0.5
SNX6-201ENST00000362031 RAD54L2Q9Y4B4 1467 aa18.19■□□□□ 0.5
SNX6-201ENST00000362031 SOGA1O94964 1423 aa18.13■□□□□ 0.49
SNX6-201ENST00000362031 TARBP1Q13395 1621 aaKnown RBP18.1■□□□□ 0.49
SNX6-201ENST00000362031 RUSC2Q8N2Y8 1516 aa18.08■□□□□ 0.49
SNX6-201ENST00000362031 ZNF608Q9ULD9 1512 aaPredicted RBP18.06■□□□□ 0.48
SNX6-201ENST00000362031 IFT140Q96RY7 1462 aa18.05■□□□□ 0.48
SNX6-201ENST00000362031 TDRD9Q8NDG6 1382 aaKnown RBP18.05■□□□□ 0.48
SNX6-201ENST00000362031 ABCA10Q8WWZ4 1543 aa18.04■□□□□ 0.48
SNX6-201ENST00000362031 WDR97A6NE52 1622 aa18.02■□□□□ 0.48
SNX6-201ENST00000362031 FAM9AQ8IZU1 332 aaPredicted RBP18.01■□□□□ 0.47
SNX6-201ENST00000362031 AQRO60306 1485 aaKnown RBP eCLIP18■□□□□ 0.471e-6■■■■■ 27.8
SNX6-201ENST00000362031 KIF27Q86VH2 1401 aa17.94■□□□□ 0.46
SNX6-201ENST00000362031 ABCA5Q8WWZ7 1642 aa17.93■□□□□ 0.46
SNX6-201ENST00000362031 EIF4G3O43432 1585 aaKnown RBP17.92■□□□□ 0.46
SNX6-201ENST00000362031 GAPVD1Q14C86 1478 aa17.92■□□□□ 0.46
SNX6-201ENST00000362031 IGF1RP08069 1367 aa17.89■□□□□ 0.46
SNX6-201ENST00000362031 CSRNP3Q8WYN3 585 aa17.86■□□□□ 0.45
SNX6-201ENST00000362031 GRIN2BQ13224 1484 aa17.83■□□□□ 0.44
SNX6-201ENST00000362031 PBRM1Q86U86 1689 aa17.83■□□□□ 0.44
SNX6-201ENST00000362031 EEA1Q15075 1411 aa17.82■□□□□ 0.44
SNX6-201ENST00000362031 EHMT2Q96KQ7 1210 aa17.81■□□□□ 0.44
SNX6-201ENST00000362031 ERICH3Q5RHP9 1530 aa17.8■□□□□ 0.44
SNX6-201ENST00000362031 SNAPC4Q5SXM2 1469 aa17.79■□□□□ 0.44
SNX6-201ENST00000362031 CARMIL1Q5VZK9 1371 aa17.76■□□□□ 0.43
SNX6-201ENST00000362031 PRXQ9BXM0 1461 aa17.75■□□□□ 0.43
SNX6-201ENST00000362031 LOC105371045A0A1W2PR82 267 aa17.75■□□□□ 0.43
SNX6-201ENST00000362031 ADAMTS12P58397 1594 aa17.73■□□□□ 0.43
SNX6-201ENST00000362031 RAPGEF2Q9Y4G8 1499 aa17.73■□□□□ 0.43
SNX6-201ENST00000362031 MAGI1Q96QZ7 1491 aaPredicted RBP17.71■□□□□ 0.43
SNX6-201ENST00000362031 FHAD1B1AJZ9 1412 aa17.71■□□□□ 0.43
SNX6-201ENST00000362031 CUL7Q14999 1698 aa17.69■□□□□ 0.42
SNX6-201ENST00000362031 FBLN2P98095 1184 aa17.69■□□□□ 0.42
SNX6-201ENST00000362031 SYNJ2O15056 1496 aa17.67■□□□□ 0.42
SNX6-201ENST00000362031 KIF21BO75037 1637 aa17.66■□□□□ 0.42
SNX6-201ENST00000362031 CHMP7Q8WUX9 453 aaPredicted RBP17.65■□□□□ 0.42
SNX6-201ENST00000362031 GRIN2AQ12879 1464 aa17.63■□□□□ 0.41
SNX6-201ENST00000362031 CHD1O14646 1710 aa17.61■□□□□ 0.41
SNX6-201ENST00000362031 GOLGA3Q08378 1498 aa17.6■□□□□ 0.41
SNX6-201ENST00000362031 UBTFP17480 764 aaKnown RBP17.58■□□□□ 0.4
SNX6-201ENST00000362031 CEP170Q5SW79 1584 aa17.55■□□□□ 0.4
SNX6-201ENST00000362031 NUP160Q12769 1436 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms