RNA–Protein interactions for RNA: ENST00000359683.8

NIF3L1-201, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,626 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-201ENST00000359683 NISCHQ9Y2I1 1504 aa29.31■■■□□ 2.28
NIF3L1-201ENST00000359683 CCDC180Q9P1Z9 1646 aa25.82■■□□□ 1.72
NIF3L1-201ENST00000359683 ABCC9O60706 1549 aa25.5■■□□□ 1.67
NIF3L1-201ENST00000359683 ZCCHC6Q5VYS8 1495 aaKnown RBP24.5■■□□□ 1.51
NIF3L1-201ENST00000359683 DCAF8L2P0C7V8 631 aa24.32■■□□□ 1.48
NIF3L1-201ENST00000359683 RB1CC1Q8TDY2 1594 aa24.3■■□□□ 1.48
NIF3L1-201ENST00000359683 DCAF1Q9Y4B6 1507 aa24.28■■□□□ 1.48
NIF3L1-201ENST00000359683 MYO15BQ96JP2 1530 aa24.23■■□□□ 1.47
NIF3L1-201ENST00000359683 NACADO15069 1562 aa24.2■■□□□ 1.46
NIF3L1-201ENST00000359683 AEBP2Q6ZN18 517 aaPredicted RBP23.99■■□□□ 1.43
NIF3L1-201ENST00000359683 UNC13AQ9UPW8 1703 aa23.85■■□□□ 1.41
NIF3L1-201ENST00000359683 DNAJC5BQ9UF47 199 aa23.8■■□□□ 1.4
NIF3L1-201ENST00000359683 PABPN1Q86U42 306 aaKnown RBP eCLIP23.67■■□□□ 1.38
NIF3L1-201ENST00000359683 BICRAQ9NZM4 1560 aa23.6■■□□□ 1.37
NIF3L1-201ENST00000359683 SCRIBQ14160 1630 aa23.58■■□□□ 1.37
NIF3L1-201ENST00000359683 SHROOM4Q9ULL8 1493 aa23.41■■□□□ 1.34
NIF3L1-201ENST00000359683 CC2D2AQ9P2K1 1620 aa23.07■■□□□ 1.28
NIF3L1-201ENST00000359683 EIF4G1Q04637 1599 aaKnown RBP23.02■■□□□ 1.28
NIF3L1-201ENST00000359683 CECR2Q9BXF3 1484 aa22.95■■□□□ 1.26
NIF3L1-201ENST00000359683 BAZ1AQ9NRL2 1556 aaPredicted RBP22.67■■□□□ 1.22
NIF3L1-201ENST00000359683 SMARCA4P51532 1647 aa22.62■■□□□ 1.21
NIF3L1-201ENST00000359683 MROH2BQ7Z745 1585 aa22.6■■□□□ 1.21
NIF3L1-201ENST00000359683 RSF1Q96T23 1441 aaPredicted RBP22.51■■□□□ 1.19
NIF3L1-201ENST00000359683 CHIC1Q5VXU3 224 aa22.44■■□□□ 1.18
NIF3L1-201ENST00000359683 ATAD2BQ9ULI0 1458 aa22.42■■□□□ 1.18
NIF3L1-201ENST00000359683 PEG3Q9GZU2 1588 aa22.42■■□□□ 1.18
NIF3L1-201ENST00000359683 SMARCA2P51531 1590 aa22.39■■□□□ 1.17
NIF3L1-201ENST00000359683 WIZO95785 1651 aa22.35■■□□□ 1.17
NIF3L1-201ENST00000359683 NCAPD3P42695 1498 aa22.35■■□□□ 1.17
NIF3L1-201ENST00000359683 SUPT5HO00267 1087 aaKnown RBP22.28■■□□□ 1.16
NIF3L1-201ENST00000359683 HMGXB3Q12766 1538 aa22.24■■□□□ 1.15
NIF3L1-201ENST00000359683 BAZ1BQ9UIG0 1483 aaKnown RBP22.23■■□□□ 1.15
NIF3L1-201ENST00000359683 TOP2AP11388 1531 aaKnown RBP22.14■■□□□ 1.13
NIF3L1-201ENST00000359683 ERCC6Q03468 1493 aa22.02■■□□□ 1.11
NIF3L1-201ENST00000359683 CUX2O14529 1486 aa21.97■■□□□ 1.11
NIF3L1-201ENST00000359683 CCDC88BA6NC98 1476 aa21.91■■□□□ 1.1
NIF3L1-201ENST00000359683 NESP48681 1621 aa21.91■■□□□ 1.1
NIF3L1-201ENST00000359683 DNAJC5Q9H3Z4 198 aa21.83■■□□□ 1.08
NIF3L1-201ENST00000359683 LAMC3Q9Y6N6 1575 aa21.79■■□□□ 1.08
NIF3L1-201ENST00000359683 THOC2Q8NI27 1593 aaKnown RBP21.75■■□□□ 1.07
NIF3L1-201ENST00000359683 CADPSQ9ULU8 1353 aa21.72■■□□□ 1.07
NIF3L1-201ENST00000359683 KIF21AQ7Z4S6 1674 aa21.72■■□□□ 1.07
NIF3L1-201ENST00000359683 CFTRP13569 1480 aa21.68■■□□□ 1.06
NIF3L1-201ENST00000359683 PDS5BQ9NTI5 1447 aa21.59■■□□□ 1.05
NIF3L1-201ENST00000359683 PRDM2Q13029 1718 aa21.49■■□□□ 1.03
NIF3L1-201ENST00000359683 MRC2Q9UBG0 1479 aa21.46■■□□□ 1.03
NIF3L1-201ENST00000359683 FANCD2Q9BXW9 1451 aa21.45■■□□□ 1.02
NIF3L1-201ENST00000359683 WDR62O43379 1518 aa21.42■■□□□ 1.02
NIF3L1-201ENST00000359683 CEP164Q9UPV0 1460 aa21.38■■□□□ 1.01
NIF3L1-201ENST00000359683 ABCC8Q09428 1581 aa21.21■□□□□ 0.99
NIF3L1-201ENST00000359683 URB2Q14146 1524 aaKnown RBP21.21■□□□□ 0.99
NIF3L1-201ENST00000359683 WRNQ14191 1432 aaPredicted RBP eCLIP21.19■□□□□ 0.98
NIF3L1-201ENST00000359683 CUX1P39880 1505 aa21.16■□□□□ 0.98
NIF3L1-201ENST00000359683 TOPBP1Q92547 1522 aa21.16■□□□□ 0.98
NIF3L1-201ENST00000359683 DNMBPQ6XZF7 1577 aa21.16■□□□□ 0.98
NIF3L1-201ENST00000359683 SYNJ1O43426 1573 aa21.1■□□□□ 0.97
NIF3L1-201ENST00000359683 TOP2BQ02880 1626 aa21.09■□□□□ 0.97
NIF3L1-201ENST00000359683 BIVM-ERCC5R4GMW8 1640 aa21.07■□□□□ 0.96
NIF3L1-201ENST00000359683 TRIM41Q8WV44 630 aa21.03■□□□□ 0.96
NIF3L1-201ENST00000359683 FGD5Q6ZNL6 1462 aa21.01■□□□□ 0.95
NIF3L1-201ENST00000359683 POLA1P09884 1462 aaPredicted RBP21■□□□□ 0.95
NIF3L1-201ENST00000359683 SOGA1O94964 1423 aa20.95■□□□□ 0.94
NIF3L1-201ENST00000359683 IFT140Q96RY7 1462 aa20.92■□□□□ 0.94
NIF3L1-201ENST00000359683 RAD54L2Q9Y4B4 1467 aa20.92■□□□□ 0.94
NIF3L1-201ENST00000359683 ZNF608Q9ULD9 1512 aaPredicted RBP20.89■□□□□ 0.94
NIF3L1-201ENST00000359683 TARBP1Q13395 1621 aaKnown RBP20.89■□□□□ 0.93
NIF3L1-201ENST00000359683 OSCARQ8IYS5 282 aa20.86■□□□□ 0.93
NIF3L1-201ENST00000359683 EIF4G3O43432 1585 aaKnown RBP20.86■□□□□ 0.93
NIF3L1-201ENST00000359683 ABCA10Q8WWZ4 1543 aa20.85■□□□□ 0.93
NIF3L1-201ENST00000359683 WDR97A6NE52 1622 aa20.8■□□□□ 0.92
NIF3L1-201ENST00000359683 TDRD9Q8NDG6 1382 aaKnown RBP20.77■□□□□ 0.92
NIF3L1-201ENST00000359683 RIMBP3CA6NJZ7 1639 aa20.74■□□□□ 0.91
NIF3L1-201ENST00000359683 RIMBP3BA6NNM3 1639 aa20.74■□□□□ 0.91
NIF3L1-201ENST00000359683 RIMBP3Q9UFD9 1639 aa20.74■□□□□ 0.91
NIF3L1-201ENST00000359683 AQRO60306 1485 aaKnown RBP eCLIP20.74■□□□□ 0.91
NIF3L1-201ENST00000359683 CHD1O14646 1710 aa20.73■□□□□ 0.91
NIF3L1-201ENST00000359683 KIF27Q86VH2 1401 aa20.72■□□□□ 0.91
NIF3L1-201ENST00000359683 SENP3Q9H4L4 574 aaPredicted RBP20.71■□□□□ 0.91
NIF3L1-201ENST00000359683 GAPVD1Q14C86 1478 aa20.7■□□□□ 0.9
NIF3L1-201ENST00000359683 ABCA5Q8WWZ7 1642 aa20.7■□□□□ 0.9
NIF3L1-201ENST00000359683 RUSC2Q8N2Y8 1516 aa20.68■□□□□ 0.9
NIF3L1-201ENST00000359683 ARHGEF11O15085 1522 aa20.65■□□□□ 0.9
NIF3L1-201ENST00000359683 GRIN2BQ13224 1484 aa20.64■□□□□ 0.89
NIF3L1-201ENST00000359683 IGF1RP08069 1367 aa20.63■□□□□ 0.89
NIF3L1-201ENST00000359683 EEA1Q15075 1411 aa20.63■□□□□ 0.89
NIF3L1-201ENST00000359683 POTEDQ86YR6 584 aa20.62■□□□□ 0.89
NIF3L1-201ENST00000359683 ERICH3Q5RHP9 1530 aa20.6■□□□□ 0.89
NIF3L1-201ENST00000359683 PBRM1Q86U86 1689 aa20.58■□□□□ 0.88
NIF3L1-201ENST00000359683 CSRNP3Q8WYN3 585 aa20.56■□□□□ 0.88
NIF3L1-201ENST00000359683 FAM9AQ8IZU1 332 aaPredicted RBP20.56■□□□□ 0.88
NIF3L1-201ENST00000359683 SNAPC4Q5SXM2 1469 aa20.53■□□□□ 0.88
NIF3L1-201ENST00000359683 MAGI1Q96QZ7 1491 aaPredicted RBP20.53■□□□□ 0.88
NIF3L1-201ENST00000359683 FBLN2P98095 1184 aa20.51■□□□□ 0.87
NIF3L1-201ENST00000359683 CARMIL1Q5VZK9 1371 aa20.49■□□□□ 0.87
NIF3L1-201ENST00000359683 FHAD1B1AJZ9 1412 aa20.49■□□□□ 0.87
NIF3L1-201ENST00000359683 CUL7Q14999 1698 aa20.47■□□□□ 0.87
NIF3L1-201ENST00000359683 ADAMTS12P58397 1594 aa20.46■□□□□ 0.87
NIF3L1-201ENST00000359683 PRXQ9BXM0 1461 aa20.46■□□□□ 0.87
NIF3L1-201ENST00000359683 ARAP1Q96P48 1450 aa20.45■□□□□ 0.86
NIF3L1-201ENST00000359683 SYNJ2O15056 1496 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms