RNA–Protein interactions for RNA: ENST00000358278.7

TPM1-206, Transcript of tropomyosin 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TPM1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-206ENST00000358278 NISCHQ9Y2I1 1504 aa36.14■■■■□ 3.38
TPM1-206ENST00000358278 CCDC180Q9P1Z9 1646 aa32.01■■■□□ 2.72
TPM1-206ENST00000358278 ABCC9O60706 1549 aa30.79■■■□□ 2.52
TPM1-206ENST00000358278 ZCCHC6Q5VYS8 1495 aaKnown RBP30.22■■■□□ 2.43
TPM1-206ENST00000358278 DCAF8L2P0C7V8 631 aa30.01■■■□□ 2.39
TPM1-206ENST00000358278 NACADO15069 1562 aa29.92■■■□□ 2.38
TPM1-206ENST00000358278 DCAF1Q9Y4B6 1507 aa29.91■■■□□ 2.38
TPM1-206ENST00000358278 RB1CC1Q8TDY2 1594 aa29.86■■■□□ 2.37
TPM1-206ENST00000358278 MYO15BQ96JP2 1530 aa29.85■■■□□ 2.37
TPM1-206ENST00000358278 UNC13AQ9UPW8 1703 aa29.3■■■□□ 2.28
TPM1-206ENST00000358278 SCRIBQ14160 1630 aa29.25■■■□□ 2.27
TPM1-206ENST00000358278 BICRAQ9NZM4 1560 aa28.91■■■□□ 2.22
TPM1-206ENST00000358278 SHROOM4Q9ULL8 1493 aa28.87■■■□□ 2.21
TPM1-206ENST00000358278 PABPN1Q86U42 306 aaKnown RBP eCLIP28.8■■■□□ 2.21e-13■■■□□ 18.2
TPM1-206ENST00000358278 EIF4G1Q04637 1599 aaKnown RBP28.13■■■□□ 2.09
TPM1-206ENST00000358278 CECR2Q9BXF3 1484 aa28.08■■■□□ 2.09
TPM1-206ENST00000358278 BAZ1AQ9NRL2 1556 aaPredicted RBP28.01■■■□□ 2.07
TPM1-206ENST00000358278 SMARCA4P51532 1647 aa28■■■□□ 2.07
TPM1-206ENST00000358278 CC2D2AQ9P2K1 1620 aa27.91■■■□□ 2.06
TPM1-206ENST00000358278 MROH2BQ7Z745 1585 aa27.86■■■□□ 2.05
TPM1-206ENST00000358278 DNAJC5BQ9UF47 199 aa27.72■■■□□ 2.03
TPM1-206ENST00000358278 SMARCA2P51531 1590 aa27.69■■■□□ 2.02
TPM1-206ENST00000358278 RSF1Q96T23 1441 aaPredicted RBP27.68■■■□□ 2.02
TPM1-206ENST00000358278 PEG3Q9GZU2 1588 aa27.67■■■□□ 2.02
TPM1-206ENST00000358278 WIZO95785 1651 aa27.66■■■□□ 2.02
TPM1-206ENST00000358278 ATAD2BQ9ULI0 1458 aa27.65■■■□□ 2.02
TPM1-206ENST00000358278 NCAPD3P42695 1498 aa27.54■■■□□ 2
TPM1-206ENST00000358278 HMGXB3Q12766 1538 aa27.52■■■□□ 2
TPM1-206ENST00000358278 BAZ1BQ9UIG0 1483 aaKnown RBP27.5■■□□□ 1.99
TPM1-206ENST00000358278 SUPT5HO00267 1087 aaKnown RBP27.38■■□□□ 1.97
TPM1-206ENST00000358278 TOP2AP11388 1531 aaKnown RBP27.35■■□□□ 1.97
TPM1-206ENST00000358278 CCDC88BA6NC98 1476 aa26.99■■□□□ 1.91
TPM1-206ENST00000358278 LAMC3Q9Y6N6 1575 aa26.82■■□□□ 1.88
TPM1-206ENST00000358278 NESP48681 1621 aa26.79■■□□□ 1.88
TPM1-206ENST00000358278 PRDM2Q13029 1718 aa26.76■■□□□ 1.88
TPM1-206ENST00000358278 CADPSQ9ULU8 1353 aa26.76■■□□□ 1.88
TPM1-206ENST00000358278 CFTRP13569 1480 aa26.73■■□□□ 1.87
TPM1-206ENST00000358278 KIF21AQ7Z4S6 1674 aa26.59■■□□□ 1.85
TPM1-206ENST00000358278 PDS5BQ9NTI5 1447 aa26.57■■□□□ 1.84
TPM1-206ENST00000358278 ERCC6Q03468 1493 aa26.53■■□□□ 1.84
TPM1-206ENST00000358278 FANCD2Q9BXW9 1451 aa26.5■■□□□ 1.83
TPM1-206ENST00000358278 CEP164Q9UPV0 1460 aa26.45■■□□□ 1.82
TPM1-206ENST00000358278 THOC2Q8NI27 1593 aaKnown RBP26.32■■□□□ 1.8
TPM1-206ENST00000358278 MRC2Q9UBG0 1479 aa26.29■■□□□ 1.8
TPM1-206ENST00000358278 ABCC8Q09428 1581 aa26.22■■□□□ 1.79
TPM1-206ENST00000358278 URB2Q14146 1524 aaKnown RBP26.21■■□□□ 1.79
TPM1-206ENST00000358278 WDR62O43379 1518 aa26.2■■□□□ 1.78
TPM1-206ENST00000358278 DNMBPQ6XZF7 1577 aa26.18■■□□□ 1.78
TPM1-206ENST00000358278 TOPBP1Q92547 1522 aa26.14■■□□□ 1.78
TPM1-206ENST00000358278 CUX1P39880 1505 aa26.13■■□□□ 1.77
TPM1-206ENST00000358278 WRNQ14191 1432 aaPredicted RBP eCLIP26.12■■□□□ 1.77
TPM1-206ENST00000358278 BIVM-ERCC5R4GMW8 1640 aa26.08■■□□□ 1.77
TPM1-206ENST00000358278 SYNJ1O43426 1573 aa26.08■■□□□ 1.76
TPM1-206ENST00000358278 TOP2BQ02880 1626 aa26.06■■□□□ 1.76
TPM1-206ENST00000358278 CUX2O14529 1486 aa26.04■■□□□ 1.76
TPM1-206ENST00000358278 FGD5Q6ZNL6 1462 aa25.97■■□□□ 1.75
TPM1-206ENST00000358278 POLA1P09884 1462 aaPredicted RBP25.95■■□□□ 1.74
TPM1-206ENST00000358278 IFT140Q96RY7 1462 aa25.84■■□□□ 1.73
TPM1-206ENST00000358278 TARBP1Q13395 1621 aaKnown RBP25.84■■□□□ 1.73
TPM1-206ENST00000358278 TRIM41Q8WV44 630 aa25.83■■□□□ 1.73
TPM1-206ENST00000358278 SOGA1O94964 1423 aa25.82■■□□□ 1.72
TPM1-206ENST00000358278 RAD54L2Q9Y4B4 1467 aa25.82■■□□□ 1.72
TPM1-206ENST00000358278 WDR97A6NE52 1622 aa25.8■■□□□ 1.72
TPM1-206ENST00000358278 CHIC1Q5VXU3 224 aa25.79■■□□□ 1.72
TPM1-206ENST00000358278 ABCA10Q8WWZ4 1543 aa25.72■■□□□ 1.71
TPM1-206ENST00000358278 EIF4G3O43432 1585 aaKnown RBP25.69■■□□□ 1.7
TPM1-206ENST00000358278 ZNF608Q9ULD9 1512 aaPredicted RBP25.68■■□□□ 1.7
TPM1-206ENST00000358278 ABCA5Q8WWZ7 1642 aa25.63■■□□□ 1.69
TPM1-206ENST00000358278 TDRD9Q8NDG6 1382 aaKnown RBP25.61■■□□□ 1.69
TPM1-206ENST00000358278 PBRM1Q86U86 1689 aa25.6■■□□□ 1.69
TPM1-206ENST00000358278 AQRO60306 1485 aaKnown RBP eCLIP25.59■■□□□ 1.692e-12■■■■□ 23
TPM1-206ENST00000358278 GAPVD1Q14C86 1478 aa25.56■■□□□ 1.68
TPM1-206ENST00000358278 KIF27Q86VH2 1401 aa25.54■■□□□ 1.68
TPM1-206ENST00000358278 GRIN2BQ13224 1484 aa25.48■■□□□ 1.67
TPM1-206ENST00000358278 RUSC2Q8N2Y8 1516 aa25.45■■□□□ 1.66
TPM1-206ENST00000358278 ERICH3Q5RHP9 1530 aa25.44■■□□□ 1.66
TPM1-206ENST00000358278 SNAPC4Q5SXM2 1469 aa25.4■■□□□ 1.66
TPM1-206ENST00000358278 MAGI1Q96QZ7 1491 aaPredicted RBP25.38■■□□□ 1.65
TPM1-206ENST00000358278 CUL7Q14999 1698 aa25.37■■□□□ 1.65
TPM1-206ENST00000358278 EEA1Q15075 1411 aa25.37■■□□□ 1.65
TPM1-206ENST00000358278 ADAMTS12P58397 1594 aa25.35■■□□□ 1.65
TPM1-206ENST00000358278 CHD1O14646 1710 aa25.32■■□□□ 1.64
TPM1-206ENST00000358278 IGF1RP08069 1367 aa25.32■■□□□ 1.64
TPM1-206ENST00000358278 FAM9AQ8IZU1 332 aaPredicted RBP25.3■■□□□ 1.64
TPM1-206ENST00000358278 SYNJ2O15056 1496 aa25.27■■□□□ 1.64
TPM1-206ENST00000358278 FHAD1B1AJZ9 1412 aa25.26■■□□□ 1.63
TPM1-206ENST00000358278 FBLN2P98095 1184 aa25.22■■□□□ 1.63
TPM1-206ENST00000358278 CSRNP3Q8WYN3 585 aa25.22■■□□□ 1.63
TPM1-206ENST00000358278 CARMIL1Q5VZK9 1371 aa25.22■■□□□ 1.63
TPM1-206ENST00000358278 CHMP7Q8WUX9 453 aaPredicted RBP25.2■■□□□ 1.62
TPM1-206ENST00000358278 GRIN2AQ12879 1464 aa25.17■■□□□ 1.62
TPM1-206ENST00000358278 PRXQ9BXM0 1461 aa25.15■■□□□ 1.62
TPM1-206ENST00000358278 RAPGEF2Q9Y4G8 1499 aa25.15■■□□□ 1.62
TPM1-206ENST00000358278 KIF21BO75037 1637 aa25.13■■□□□ 1.61
TPM1-206ENST00000358278 CEP170Q5SW79 1584 aa25.05■■□□□ 1.6
TPM1-206ENST00000358278 CTTNBP2Q8WZ74 1663 aa25.03■■□□□ 1.6
TPM1-206ENST00000358278 NUP160Q12769 1436 aa25■■□□□ 1.59
TPM1-206ENST00000358278 OSCARQ8IYS5 282 aa25■■□□□ 1.59
TPM1-206ENST00000358278 GOLGA3Q08378 1498 aa24.99■■□□□ 1.59
TPM1-206ENST00000358278 EHMT2Q96KQ7 1210 aa24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms