RNA–Protein interactions for RNA: ENST00000357457.8

COL4A3BP-202, Transcript of collagen type IV alpha 3 binding protein, humanhuman

TSL 5

Gene COL4A3BP, Length 886 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BP-202ENST00000357457 NISCHQ9Y2I1 1504 aa21.79■■□□□ 1.08
COL4A3BP-202ENST00000357457 AEBP2Q6ZN18 517 aaPredicted RBP20.35■□□□□ 0.85
COL4A3BP-202ENST00000357457 ABCC9O60706 1549 aa19.71■□□□□ 0.75
COL4A3BP-202ENST00000357457 CHIC1Q5VXU3 224 aa19.69■□□□□ 0.74
COL4A3BP-202ENST00000357457 CCDC180Q9P1Z9 1646 aa19.58■□□□□ 0.73
COL4A3BP-202ENST00000357457 RB1CC1Q8TDY2 1594 aa18.72■□□□□ 0.59
COL4A3BP-202ENST00000357457 DNAJC5BQ9UF47 199 aa18.71■□□□□ 0.59
COL4A3BP-202ENST00000357457 NACADO15069 1562 aa18.58■□□□□ 0.56
COL4A3BP-202ENST00000357457 DCAF8L2P0C7V8 631 aa18.41■□□□□ 0.54
COL4A3BP-202ENST00000357457 PABPN1Q86U42 306 aaKnown RBP eCLIP18.35■□□□□ 0.53
COL4A3BP-202ENST00000357457 MYO15BQ96JP2 1530 aa18.32■□□□□ 0.52
COL4A3BP-202ENST00000357457 UNC13AQ9UPW8 1703 aa18.31■□□□□ 0.52
COL4A3BP-202ENST00000357457 BICRAQ9NZM4 1560 aa18.21■□□□□ 0.51
COL4A3BP-202ENST00000357457 DCAF1Q9Y4B6 1507 aa18.02■□□□□ 0.47
COL4A3BP-202ENST00000357457 ZCCHC6Q5VYS8 1495 aaKnown RBP18.01■□□□□ 0.47
COL4A3BP-202ENST00000357457 SHROOM4Q9ULL8 1493 aa17.95■□□□□ 0.46
COL4A3BP-202ENST00000357457 CC2D2AQ9P2K1 1620 aa17.82■□□□□ 0.44
COL4A3BP-202ENST00000357457 CECR2Q9BXF3 1484 aa17.79■□□□□ 0.44
COL4A3BP-202ENST00000357457 SCRIBQ14160 1630 aa17.79■□□□□ 0.44
COL4A3BP-202ENST00000357457 EIF4G1Q04637 1599 aaKnown RBP17.74■□□□□ 0.43
COL4A3BP-202ENST00000357457 SENP3Q9H4L4 574 aaPredicted RBP17.35■□□□□ 0.37
COL4A3BP-202ENST00000357457 DNAJC5Q9H3Z4 198 aa17.3■□□□□ 0.36
COL4A3BP-202ENST00000357457 PHF23Q9BUL5 403 aaPredicted RBP17.23■□□□□ 0.35
COL4A3BP-202ENST00000357457 NCAPD3P42695 1498 aa17.18■□□□□ 0.34
COL4A3BP-202ENST00000357457 CUX2O14529 1486 aa17.09■□□□□ 0.33
COL4A3BP-202ENST00000357457 ATAD2BQ9ULI0 1458 aa17.08■□□□□ 0.32
COL4A3BP-202ENST00000357457 ERCC6Q03468 1493 aa17.01■□□□□ 0.31
COL4A3BP-202ENST00000357457 SMARCA2P51531 1590 aa17.01■□□□□ 0.31
COL4A3BP-202ENST00000357457 HMGXB3Q12766 1538 aa17■□□□□ 0.31
COL4A3BP-202ENST00000357457 SMARCA4P51532 1647 aa16.99■□□□□ 0.31
COL4A3BP-202ENST00000357457 NESP48681 1621 aa16.9■□□□□ 0.3
COL4A3BP-202ENST00000357457 BAZ1AQ9NRL2 1556 aaPredicted RBP16.89■□□□□ 0.3
COL4A3BP-202ENST00000357457 PEG3Q9GZU2 1588 aa16.88■□□□□ 0.29
COL4A3BP-202ENST00000357457 BAZ1BQ9UIG0 1483 aaKnown RBP16.86■□□□□ 0.29
COL4A3BP-202ENST00000357457 LAMC3Q9Y6N6 1575 aa16.77■□□□□ 0.28
COL4A3BP-202ENST00000357457 MROH2BQ7Z745 1585 aa16.77■□□□□ 0.27
COL4A3BP-202ENST00000357457 THOC2Q8NI27 1593 aaKnown RBP16.76■□□□□ 0.27
COL4A3BP-202ENST00000357457 PDS5BQ9NTI5 1447 aa16.7■□□□□ 0.26
COL4A3BP-202ENST00000357457 KIF21AQ7Z4S6 1674 aa16.67■□□□□ 0.26
COL4A3BP-202ENST00000357457 CADPSQ9ULU8 1353 aa16.64■□□□□ 0.25
COL4A3BP-202ENST00000357457 WIZO95785 1651 aa16.54■□□□□ 0.24
COL4A3BP-202ENST00000357457 MRC2Q9UBG0 1479 aa16.54■□□□□ 0.24
COL4A3BP-202ENST00000357457 WDR62O43379 1518 aa16.5■□□□□ 0.23
COL4A3BP-202ENST00000357457 CEP164Q9UPV0 1460 aa16.42■□□□□ 0.22
COL4A3BP-202ENST00000357457 CFTRP13569 1480 aa16.42■□□□□ 0.22
COL4A3BP-202ENST00000357457 FANCD2Q9BXW9 1451 aa16.41■□□□□ 0.22
COL4A3BP-202ENST00000357457 RSF1Q96T23 1441 aaPredicted RBP16.39■□□□□ 0.21
COL4A3BP-202ENST00000357457 TRIM41Q8WV44 630 aa16.38■□□□□ 0.21
COL4A3BP-202ENST00000357457 TOP2AP11388 1531 aaKnown RBP16.32■□□□□ 0.2
COL4A3BP-202ENST00000357457 OSCARQ8IYS5 282 aa16.32■□□□□ 0.2
COL4A3BP-202ENST00000357457 URB2Q14146 1524 aaKnown RBP16.29■□□□□ 0.2
COL4A3BP-202ENST00000357457 FOXD1Q16676 465 aa16.21■□□□□ 0.19
COL4A3BP-202ENST00000357457 PRDM2Q13029 1718 aa16.2■□□□□ 0.18
COL4A3BP-202ENST00000357457 CCDC88BA6NC98 1476 aa16.16■□□□□ 0.18
COL4A3BP-202ENST00000357457 IFT140Q96RY7 1462 aa16.13■□□□□ 0.17
COL4A3BP-202ENST00000357457 PLPPR3Q6T4P5 718 aa16.12■□□□□ 0.17
COL4A3BP-202ENST00000357457 ZNF608Q9ULD9 1512 aaPredicted RBP16.11■□□□□ 0.17
COL4A3BP-202ENST00000357457 TOPBP1Q92547 1522 aa16.09■□□□□ 0.17
COL4A3BP-202ENST00000357457 ABCC8Q09428 1581 aa16.08■□□□□ 0.16
COL4A3BP-202ENST00000357457 RIMBP3CA6NJZ7 1639 aa16.06■□□□□ 0.16
COL4A3BP-202ENST00000357457 RIMBP3BA6NNM3 1639 aa16.06■□□□□ 0.16
COL4A3BP-202ENST00000357457 RIMBP3Q9UFD9 1639 aa16.06■□□□□ 0.16
COL4A3BP-202ENST00000357457 DNMBPQ6XZF7 1577 aa16■□□□□ 0.15
COL4A3BP-202ENST00000357457 ARHGEF11O15085 1522 aa15.99■□□□□ 0.15
COL4A3BP-202ENST00000357457 EIF4G3O43432 1585 aaKnown RBP15.98■□□□□ 0.15
COL4A3BP-202ENST00000357457 TARBP1Q13395 1621 aaKnown RBP15.97■□□□□ 0.15
COL4A3BP-202ENST00000357457 AQRO60306 1485 aaKnown RBP eCLIP15.96■□□□□ 0.14
COL4A3BP-202ENST00000357457 CYB5RLQ6IPT4 315 aa15.92■□□□□ 0.14
COL4A3BP-202ENST00000357457 POLA1P09884 1462 aaPredicted RBP15.91■□□□□ 0.14
COL4A3BP-202ENST00000357457 CHD1O14646 1710 aa15.9■□□□□ 0.14
COL4A3BP-202ENST00000357457 SOGA1O94964 1423 aa15.85■□□□□ 0.13
COL4A3BP-202ENST00000357457 RAD54L2Q9Y4B4 1467 aa15.85■□□□□ 0.13
COL4A3BP-202ENST00000357457 FBLN2P98095 1184 aa15.85■□□□□ 0.13
COL4A3BP-202ENST00000357457 ARAP1Q96P48 1450 aa15.84■□□□□ 0.13
COL4A3BP-202ENST00000357457 TDRD9Q8NDG6 1382 aaKnown RBP15.83■□□□□ 0.12
COL4A3BP-202ENST00000357457 WDR97A6NE52 1622 aa15.8■□□□□ 0.12
COL4A3BP-202ENST00000357457 FGD5Q6ZNL6 1462 aa15.78■□□□□ 0.12
COL4A3BP-202ENST00000357457 SNAPC4Q5SXM2 1469 aa15.76■□□□□ 0.11
COL4A3BP-202ENST00000357457 CUX1P39880 1505 aa15.75■□□□□ 0.11
COL4A3BP-202ENST00000357457 TRHP20396 242 aaPredicted RBP15.75■□□□□ 0.11
COL4A3BP-202ENST00000357457 CHMP7Q8WUX9 453 aaPredicted RBP15.75■□□□□ 0.11
COL4A3BP-202ENST00000357457 CLASP1Q7Z460 1538 aa15.74■□□□□ 0.11
COL4A3BP-202ENST00000357457 MAGI1Q96QZ7 1491 aaPredicted RBP15.74■□□□□ 0.11
COL4A3BP-202ENST00000357457 GRIN2BQ13224 1484 aa15.72■□□□□ 0.11
COL4A3BP-202ENST00000357457 SYNJ1O43426 1573 aa15.7■□□□□ 0.1
COL4A3BP-202ENST00000357457 SYNJ2O15056 1496 aa15.69■□□□□ 0.1
COL4A3BP-202ENST00000357457 GAPVD1Q14C86 1478 aa15.65■□□□□ 0.1
COL4A3BP-202ENST00000357457 ABCA10Q8WWZ4 1543 aa15.63■□□□□ 0.09
COL4A3BP-202ENST00000357457 PBRM1Q86U86 1689 aa15.61■□□□□ 0.09
COL4A3BP-202ENST00000357457 ABCA5Q8WWZ7 1642 aa15.58■□□□□ 0.09
COL4A3BP-202ENST00000357457 WRNQ14191 1432 aaPredicted RBP eCLIP15.52■□□□□ 0.08
COL4A3BP-202ENST00000357457 GRIN2AQ12879 1464 aa15.52■□□□□ 0.07
COL4A3BP-202ENST00000357457 SUPT5HO00267 1087 aaKnown RBP15.5■□□□□ 0.07
COL4A3BP-202ENST00000357457 NUP160Q12769 1436 aa15.5■□□□□ 0.07
COL4A3BP-202ENST00000357457 ERCC6L2Q5T890 1561 aa15.47■□□□□ 0.07
COL4A3BP-202ENST00000357457 TOP2BQ02880 1626 aa15.46■□□□□ 0.07
COL4A3BP-202ENST00000357457 BIVM-ERCC5R4GMW8 1640 aa15.46■□□□□ 0.06
COL4A3BP-202ENST00000357457 ADAMTS12P58397 1594 aa15.45■□□□□ 0.06
COL4A3BP-202ENST00000357457 CEP170Q5SW79 1584 aa15.45■□□□□ 0.06
COL4A3BP-202ENST00000357457 FHAD1B1AJZ9 1412 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 117.5 ms