RNA–Protein interactions for RNA: ENST00000357085.4

TRIM38-201, Transcript of tripartite motif containing 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM38, Length 9,413 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38-201ENST00000357085 NISCHQ9Y2I1 1504 aa11.62□□□□□ -0.55
TRIM38-201ENST00000357085 PELP1Q8IZL8 1130 aaKnown RBP11.08□□□□□ -0.64
TRIM38-201ENST00000357085 MYT1Q01538 1121 aa11.05□□□□□ -0.64
TRIM38-201ENST00000357085 ZEB1P37275 1124 aaPredicted RBP10.54□□□□□ -0.72
TRIM38-201ENST00000357085 HRCP23327 699 aa10.52□□□□□ -0.73
TRIM38-201ENST00000357085 TTBK1Q5TCY1 1321 aaPredicted RBP10.39□□□□□ -0.75
TRIM38-201ENST00000357085 PCGF6Q9BYE7 350 aa10.35□□□□□ -0.75
TRIM38-201ENST00000357085 CENPBP07199 599 aaPredicted RBP10.25□□□□□ -0.77
TRIM38-201ENST00000357085 SUPT5HO00267 1087 aaKnown RBP10.21□□□□□ -0.77
TRIM38-201ENST00000357085 CCDC180Q9P1Z9 1646 aa10.2□□□□□ -0.78
TRIM38-201ENST00000357085 DCAF1Q9Y4B6 1507 aa10.16□□□□□ -0.78
TRIM38-201ENST00000357085 PPARGC1BQ86YN6 1023 aaKnown RBP10.09□□□□□ -0.79
TRIM38-201ENST00000357085 CLSPNQ9HAW4 1339 aa10.06□□□□□ -0.8
TRIM38-201ENST00000357085 SHROOM4Q9ULL8 1493 aa10.04□□□□□ -0.8
TRIM38-201ENST00000357085 TRIM26Q12899 539 aaPredicted RBP10.02□□□□□ -0.81
TRIM38-201ENST00000357085 SCAF1Q9H7N4 1312 aaKnown RBP9.91□□□□□ -0.82
TRIM38-201ENST00000357085 ZCCHC6Q5VYS8 1495 aaKnown RBP9.9□□□□□ -0.83
TRIM38-201ENST00000357085 CCER1Q8TC90 406 aaPredicted RBP9.89□□□□□ -0.83
TRIM38-201ENST00000357085 ACIN1Q9UKV3 1341 aaKnown RBP9.87□□□□□ -0.83
TRIM38-201ENST00000357085 GTF3C3Q9Y5Q9 886 aa9.83□□□□□ -0.84
TRIM38-201ENST00000357085 CHIC1Q5VXU3 224 aa9.79□□□□□ -0.84
TRIM38-201ENST00000357085 YTHDC1Q96MU7 727 aaKnown RBP9.74□□□□□ -0.85
TRIM38-201ENST00000357085 MYT1LQ9UL68 1186 aa9.74□□□□□ -0.85
TRIM38-201ENST00000357085 ERICH6Q7L0X2 663 aa9.73□□□□□ -0.85
TRIM38-201ENST00000357085 DIEXFQ68CQ4 756 aaKnown RBP9.71□□□□□ -0.86
TRIM38-201ENST00000357085 APLP2Q06481 763 aa9.65□□□□□ -0.86
TRIM38-201ENST00000357085 DCAF8L2P0C7V8 631 aa9.64□□□□□ -0.87
TRIM38-201ENST00000357085 NEUROD1Q13562 356 aa9.64□□□□□ -0.87
TRIM38-201ENST00000357085 NEFLP07196 543 aa9.63□□□□□ -0.87
TRIM38-201ENST00000357085 TRIM41Q8WV44 630 aa9.62□□□□□ -0.87
TRIM38-201ENST00000357085 MYO15BQ96JP2 1530 aa9.61□□□□□ -0.87
TRIM38-201ENST00000357085 ABCC9O60706 1549 aa9.58□□□□□ -0.88
TRIM38-201ENST00000357085 BCL11AQ9H165 835 aa9.57□□□□□ -0.88
TRIM38-201ENST00000357085 LOC105371045A0A1W2PR82 267 aa9.55□□□□□ -0.88
TRIM38-201ENST00000357085 ANP32EQ9BTT0 268 aa9.52□□□□□ -0.89
TRIM38-201ENST00000357085 EEA1Q15075 1411 aa9.49□□□□□ -0.89
TRIM38-201ENST00000357085 EHMT2Q96KQ7 1210 aa9.49□□□□□ -0.89
TRIM38-201ENST00000357085 FAM9AQ8IZU1 332 aaPredicted RBP9.48□□□□□ -0.89
TRIM38-201ENST00000357085 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.47□□□□□ -0.89
TRIM38-201ENST00000357085 RB1CC1Q8TDY2 1594 aa9.45□□□□□ -0.9
TRIM38-201ENST00000357085 ZNF316A6NFI3 1004 aaPredicted RBP9.43□□□□□ -0.9
TRIM38-201ENST00000357085 RTL5Q5HYW3 569 aaPredicted RBP9.34□□□□□ -0.91
TRIM38-201ENST00000357085 NACADO15069 1562 aa9.29□□□□□ -0.92
TRIM38-201ENST00000357085 WRNQ14191 1432 aaPredicted RBP eCLIP9.28□□□□□ -0.92
TRIM38-201ENST00000357085 BCANQ96GW7 911 aa9.24□□□□□ -0.93
TRIM38-201ENST00000357085 CDK11AQ9UQ88 783 aaPredicted RBP9.22□□□□□ -0.93
TRIM38-201ENST00000357085 CSRNP3Q8WYN3 585 aa9.22□□□□□ -0.93
TRIM38-201ENST00000357085 UBTFP17480 764 aaKnown RBP9.21□□□□□ -0.93
TRIM38-201ENST00000357085 SUPT16HQ9Y5B9 1047 aaKnown RBP9.21□□□□□ -0.93
TRIM38-201ENST00000357085 GOLGA3Q08378 1498 aa9.21□□□□□ -0.94
TRIM38-201ENST00000357085 PRKCSHP14314 528 aaPredicted RBP9.21□□□□□ -0.94
TRIM38-201ENST00000357085 MIER1Q8N108 512 aa9.2□□□□□ -0.94
TRIM38-201ENST00000357085 SCRIBQ14160 1630 aa9.2□□□□□ -0.94
TRIM38-201ENST00000357085 BAZ1AQ9NRL2 1556 aaPredicted RBP9.2□□□□□ -0.94
TRIM38-201ENST00000357085 TNIKQ9UKE5 1360 aa9.17□□□□□ -0.94
TRIM38-201ENST00000357085 GLIPR1L2Q4G1C9 344 aa9.17□□□□□ -0.94
TRIM38-201ENST00000357085 ERICH6BQ5W0A0 696 aa9.16□□□□□ -0.94
TRIM38-201ENST00000357085 CEP164Q9UPV0 1460 aa9.16□□□□□ -0.94
TRIM38-201ENST00000357085 RSF1Q96T23 1441 aaPredicted RBP9.14□□□□□ -0.95
TRIM38-201ENST00000357085 BAZ1BQ9UIG0 1483 aaKnown RBP9.14□□□□□ -0.95
TRIM38-201ENST00000357085 CEP162Q5TB80 1403 aa9.14□□□□□ -0.95
TRIM38-201ENST00000357085 TSHZ2Q9NRE2 1034 aa9.13□□□□□ -0.95
TRIM38-201ENST00000357085 FKBP8Q14318 412 aa9.13□□□□□ -0.95
TRIM38-201ENST00000357085 DAXXQ9UER7 740 aaPredicted RBP9.13□□□□□ -0.95
TRIM38-201ENST00000357085 HNRNPUL2Q1KMD3 747 aaKnown RBP9.12□□□□□ -0.95
TRIM38-201ENST00000357085 ANP32AP39687 249 aaKnown RBP9.09□□□□□ -0.95
TRIM38-201ENST00000357085 CLIP1P30622 1438 aa9.08□□□□□ -0.96
TRIM38-201ENST00000357085 ANP32CO43423 234 aa9.08□□□□□ -0.96
TRIM38-201ENST00000357085 TIMELESSQ9UNS1 1208 aa9.07□□□□□ -0.96
TRIM38-201ENST00000357085 TOP2AP11388 1531 aaKnown RBP9.07□□□□□ -0.96
TRIM38-201ENST00000357085 KIF21BO75037 1637 aa9.06□□□□□ -0.96
TRIM38-201ENST00000357085 EIF5BO60841 1220 aaKnown RBP9.05□□□□□ -0.96
TRIM38-201ENST00000357085 DEKP35659 375 aaKnown RBP9.03□□□□□ -0.96
TRIM38-201ENST00000357085 RBM19Q9Y4C8 960 aaKnown RBP9.03□□□□□ -0.96
TRIM38-201ENST00000357085 VPS8Q8N3P4 1428 aa9.02□□□□□ -0.96
TRIM38-201ENST00000357085 NBR1Q14596 966 aa9□□□□□ -0.97
TRIM38-201ENST00000357085 CCER2I3L3R5 266 aa8.97□□□□□ -0.97
TRIM38-201ENST00000357085 NOP58Q9Y2X3 529 aaKnown RBP8.95□□□□□ -0.98
TRIM38-201ENST00000357085 ERICH3Q5RHP9 1530 aa8.94□□□□□ -0.98
TRIM38-201ENST00000357085 ITGAEP38570 1179 aa8.94□□□□□ -0.98
TRIM38-201ENST00000357085 FANCIQ9NVI1 1328 aa8.93□□□□□ -0.98
TRIM38-201ENST00000357085 ZBTB47Q9UFB7 747 aaPredicted RBP8.92□□□□□ -0.98
TRIM38-201ENST00000357085 ARID4BQ4LE39 1312 aaPredicted RBP8.91□□□□□ -0.98
TRIM38-201ENST00000357085 SMARCA4P51532 1647 aa8.91□□□□□ -0.98
TRIM38-201ENST00000357085 DDRGK1Q96HY6 314 aa8.9□□□□□ -0.98
TRIM38-201ENST00000357085 FHAD1B1AJZ9 1412 aa8.9□□□□□ -0.99
TRIM38-201ENST00000357085 USP35Q9P2H5 1018 aa8.9□□□□□ -0.99
TRIM38-201ENST00000357085 TONSLQ96HA7 1378 aa8.89□□□□□ -0.99
TRIM38-201ENST00000357085 SMARCA2P51531 1590 aa8.89□□□□□ -0.99
TRIM38-201ENST00000357085 RANGAP1P46060 587 aaPredicted RBP8.88□□□□□ -0.99
TRIM38-201ENST00000357085 PPM1GO15355 546 aaPredicted RBP8.87□□□□□ -0.99
TRIM38-201ENST00000357085 NEFMP07197 916 aa8.85□□□□□ -0.99
TRIM38-201ENST00000357085 TRIM52Q96A61 297 aa8.85□□□□□ -0.99
TRIM38-201ENST00000357085 RTN4Q9NQC3 1192 aaKnown RBP8.84□□□□□ -0.99
TRIM38-201ENST00000357085 WIZO95785 1651 aa8.83□□□□□ -1
TRIM38-201ENST00000357085 HNRNPUQ00839 825 aaKnown RBP eCLIP8.83□□□□□ -1
TRIM38-201ENST00000357085 PPP4R2Q9NY27 417 aa8.83□□□□□ -1
TRIM38-201ENST00000357085 CCNB3Q8WWL7 1395 aa8.82□□□□□ -1
TRIM38-201ENST00000357085 KIF27Q86VH2 1401 aa8.81□□□□□ -1
TRIM38-201ENST00000357085 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms