RNA–Protein interactions for RNA: ENST00000354513.9

PDGFA-201, Transcript of platelet derived growth factor subunit A, humanhuman

TSL 1 (best) BASIC

Gene PDGFA, Length 1,308 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFA-201ENST00000354513 NISCHQ9Y2I1 1504 aa40.26■■■■■ 4.04
PDGFA-201ENST00000354513 CCDC180Q9P1Z9 1646 aa36.25■■■■□ 3.39
PDGFA-201ENST00000354513 ABCC9O60706 1549 aa36.03■■■■□ 3.36
PDGFA-201ENST00000354513 RB1CC1Q8TDY2 1594 aa34.35■■■■□ 3.09
PDGFA-201ENST00000354513 NACADO15069 1562 aa34.12■■■■□ 3.05
PDGFA-201ENST00000354513 UNC13AQ9UPW8 1703 aa33.86■■■■□ 3.01
PDGFA-201ENST00000354513 DNAJC5BQ9UF47 199 aa33.76■■■□□ 2.99
PDGFA-201ENST00000354513 MYO15BQ96JP2 1530 aa33.68■■■□□ 2.98
PDGFA-201ENST00000354513 DCAF8L2P0C7V8 631 aa33.64■■■□□ 2.98
PDGFA-201ENST00000354513 BICRAQ9NZM4 1560 aa33.49■■■□□ 2.95
PDGFA-201ENST00000354513 PABPN1Q86U42 306 aaKnown RBP eCLIP33.44■■■□□ 2.94
PDGFA-201ENST00000354513 ZCCHC6Q5VYS8 1495 aaKnown RBP33.42■■■□□ 2.94
PDGFA-201ENST00000354513 DCAF1Q9Y4B6 1507 aa33.28■■■□□ 2.92
PDGFA-201ENST00000354513 SCRIBQ14160 1630 aa32.96■■■□□ 2.87
PDGFA-201ENST00000354513 SHROOM4Q9ULL8 1493 aa32.91■■■□□ 2.86
PDGFA-201ENST00000354513 CC2D2AQ9P2K1 1620 aa32.65■■■□□ 2.82
PDGFA-201ENST00000354513 EIF4G1Q04637 1599 aaKnown RBP32.58■■■□□ 2.81
PDGFA-201ENST00000354513 CECR2Q9BXF3 1484 aa32.43■■■□□ 2.78
PDGFA-201ENST00000354513 SMARCA4P51532 1647 aa31.48■■■□□ 2.63
PDGFA-201ENST00000354513 NCAPD3P42695 1498 aa31.46■■■□□ 2.63
PDGFA-201ENST00000354513 ATAD2BQ9ULI0 1458 aa31.39■■■□□ 2.62
PDGFA-201ENST00000354513 HMGXB3Q12766 1538 aa31.32■■■□□ 2.6
PDGFA-201ENST00000354513 SMARCA2P51531 1590 aa31.31■■■□□ 2.6
PDGFA-201ENST00000354513 BAZ1AQ9NRL2 1556 aaPredicted RBP31.23■■■□□ 2.59
PDGFA-201ENST00000354513 PEG3Q9GZU2 1588 aa31.17■■■□□ 2.58
PDGFA-201ENST00000354513 BAZ1BQ9UIG0 1483 aaKnown RBP31.06■■■□□ 2.56
PDGFA-201ENST00000354513 MROH2BQ7Z745 1585 aa31.06■■■□□ 2.56
PDGFA-201ENST00000354513 CUX2O14529 1486 aa31.03■■■□□ 2.56
PDGFA-201ENST00000354513 NESP48681 1621 aa31.03■■■□□ 2.56
PDGFA-201ENST00000354513 ERCC6Q03468 1493 aa31.02■■■□□ 2.56
PDGFA-201ENST00000354513 DNAJC5Q9H3Z4 198 aa30.87■■■□□ 2.53
PDGFA-201ENST00000354513 THOC2Q8NI27 1593 aaKnown RBP30.82■■■□□ 2.52
PDGFA-201ENST00000354513 LAMC3Q9Y6N6 1575 aa30.82■■■□□ 2.52
PDGFA-201ENST00000354513 KIF21AQ7Z4S6 1674 aa30.77■■■□□ 2.52
PDGFA-201ENST00000354513 WIZO95785 1651 aa30.75■■■□□ 2.51
PDGFA-201ENST00000354513 PDS5BQ9NTI5 1447 aa30.48■■■□□ 2.47
PDGFA-201ENST00000354513 CADPSQ9ULU8 1353 aa30.44■■■□□ 2.46
PDGFA-201ENST00000354513 RSF1Q96T23 1441 aaPredicted RBP30.35■■■□□ 2.45
PDGFA-201ENST00000354513 WDR62O43379 1518 aa30.32■■■□□ 2.44
PDGFA-201ENST00000354513 MRC2Q9UBG0 1479 aa30.32■■■□□ 2.44
PDGFA-201ENST00000354513 TOP2AP11388 1531 aaKnown RBP30.3■■■□□ 2.44
PDGFA-201ENST00000354513 CEP164Q9UPV0 1460 aa30.19■■■□□ 2.42
PDGFA-201ENST00000354513 CFTRP13569 1480 aa30.18■■■□□ 2.42
PDGFA-201ENST00000354513 FANCD2Q9BXW9 1451 aa30.15■■■□□ 2.42
PDGFA-201ENST00000354513 PRDM2Q13029 1718 aa30.14■■■□□ 2.42
PDGFA-201ENST00000354513 URB2Q14146 1524 aaKnown RBP29.98■■■□□ 2.39
PDGFA-201ENST00000354513 CCDC88BA6NC98 1476 aa29.89■■■□□ 2.38
PDGFA-201ENST00000354513 TOPBP1Q92547 1522 aa29.64■■■□□ 2.34
PDGFA-201ENST00000354513 ZNF608Q9ULD9 1512 aaPredicted RBP29.59■■■□□ 2.33
PDGFA-201ENST00000354513 DNMBPQ6XZF7 1577 aa29.56■■■□□ 2.32
PDGFA-201ENST00000354513 IFT140Q96RY7 1462 aa29.56■■■□□ 2.32
PDGFA-201ENST00000354513 EIF4G3O43432 1585 aaKnown RBP29.52■■■□□ 2.32
PDGFA-201ENST00000354513 TARBP1Q13395 1621 aaKnown RBP29.48■■■□□ 2.31
PDGFA-201ENST00000354513 TRIM41Q8WV44 630 aa29.47■■■□□ 2.31
PDGFA-201ENST00000354513 ABCC8Q09428 1581 aa29.47■■■□□ 2.31
PDGFA-201ENST00000354513 OSCARQ8IYS5 282 aa29.44■■■□□ 2.3
PDGFA-201ENST00000354513 RIMBP3CA6NJZ7 1639 aa29.35■■■□□ 2.29
PDGFA-201ENST00000354513 RIMBP3BA6NNM3 1639 aa29.35■■■□□ 2.29
PDGFA-201ENST00000354513 RIMBP3Q9UFD9 1639 aa29.35■■■□□ 2.29
PDGFA-201ENST00000354513 CHD1O14646 1710 aa29.35■■■□□ 2.29
PDGFA-201ENST00000354513 POLA1P09884 1462 aaPredicted RBP29.33■■■□□ 2.29
PDGFA-201ENST00000354513 AQRO60306 1485 aaKnown RBP eCLIP29.25■■■□□ 2.27
PDGFA-201ENST00000354513 RAD54L2Q9Y4B4 1467 aa29.2■■■□□ 2.27
PDGFA-201ENST00000354513 ARHGEF11O15085 1522 aa29.19■■■□□ 2.26
PDGFA-201ENST00000354513 CUX1P39880 1505 aa29.18■■■□□ 2.26
PDGFA-201ENST00000354513 FGD5Q6ZNL6 1462 aa29.15■■■□□ 2.26
PDGFA-201ENST00000354513 WDR97A6NE52 1622 aa29.15■■■□□ 2.26
PDGFA-201ENST00000354513 SOGA1O94964 1423 aa29.09■■■□□ 2.25
PDGFA-201ENST00000354513 TDRD9Q8NDG6 1382 aaKnown RBP29.03■■■□□ 2.24
PDGFA-201ENST00000354513 SNAPC4Q5SXM2 1469 aa29■■■□□ 2.23
PDGFA-201ENST00000354513 PBRM1Q86U86 1689 aa28.99■■■□□ 2.23
PDGFA-201ENST00000354513 CLASP1Q7Z460 1538 aa28.95■■■□□ 2.22
PDGFA-201ENST00000354513 ARAP1Q96P48 1450 aa28.93■■■□□ 2.22
PDGFA-201ENST00000354513 MAGI1Q96QZ7 1491 aaPredicted RBP28.9■■■□□ 2.22
PDGFA-201ENST00000354513 ABCA5Q8WWZ7 1642 aa28.89■■■□□ 2.22
PDGFA-201ENST00000354513 GRIN2BQ13224 1484 aa28.88■■■□□ 2.21
PDGFA-201ENST00000354513 FBLN2P98095 1184 aa28.87■■■□□ 2.21
PDGFA-201ENST00000354513 SUPT5HO00267 1087 aaKnown RBP28.84■■■□□ 2.21
PDGFA-201ENST00000354513 SYNJ1O43426 1573 aa28.83■■■□□ 2.21
PDGFA-201ENST00000354513 ABCA10Q8WWZ4 1543 aa28.82■■■□□ 2.2
PDGFA-201ENST00000354513 SYNJ2O15056 1496 aa28.8■■■□□ 2.2
PDGFA-201ENST00000354513 BIVM-ERCC5R4GMW8 1640 aa28.8■■■□□ 2.2
PDGFA-201ENST00000354513 GAPVD1Q14C86 1478 aa28.79■■■□□ 2.2
PDGFA-201ENST00000354513 CYB5RLQ6IPT4 315 aa28.76■■■□□ 2.19
PDGFA-201ENST00000354513 TOP2BQ02880 1626 aa28.73■■■□□ 2.19
PDGFA-201ENST00000354513 CHMP7Q8WUX9 453 aaPredicted RBP28.68■■■□□ 2.18
PDGFA-201ENST00000354513 ADAMTS12P58397 1594 aa28.65■■■□□ 2.18
PDGFA-201ENST00000354513 WRNQ14191 1432 aaPredicted RBP eCLIP28.59■■■□□ 2.17
PDGFA-201ENST00000354513 GRIN2AQ12879 1464 aa28.56■■■□□ 2.16
PDGFA-201ENST00000354513 CEP170Q5SW79 1584 aa28.55■■■□□ 2.16
PDGFA-201ENST00000354513 ERCC6L2Q5T890 1561 aa28.51■■■□□ 2.15
PDGFA-201ENST00000354513 NUP160Q12769 1436 aa28.46■■■□□ 2.15
PDGFA-201ENST00000354513 SHROOM2Q13796 1616 aa28.46■■■□□ 2.15
PDGFA-201ENST00000354513 ERICH3Q5RHP9 1530 aa28.46■■■□□ 2.15
PDGFA-201ENST00000354513 FHAD1B1AJZ9 1412 aa28.4■■■□□ 2.14
PDGFA-201ENST00000354513 TRHP20396 242 aaPredicted RBP28.38■■■□□ 2.13
PDGFA-201ENST00000354513 RUSC2Q8N2Y8 1516 aa28.26■■■□□ 2.11
PDGFA-201ENST00000354513 KIF13AQ9H1H9 1805 aa28.11■■■□□ 2.09
PDGFA-201ENST00000354513 CUL7Q14999 1698 aa28.11■■■□□ 2.09
PDGFA-201ENST00000354513 PRG4Q92954 1404 aaPredicted RBP28.1■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 256.3 ms