RNA–Protein interactions for RNA: ENST00000343975.9

HMGCR-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA reductase, humanhuman

TSL 1 (best) BASIC

Gene HMGCR, Length 3,681 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCR-202ENST00000343975 NISCHQ9Y2I1 1504 aa18.35■□□□□ 0.53
HMGCR-202ENST00000343975 CCDC180Q9P1Z9 1646 aa16.08■□□□□ 0.17
HMGCR-202ENST00000343975 DCAF8L2P0C7V8 631 aa15.81■□□□□ 0.12
HMGCR-202ENST00000343975 ABCC9O60706 1549 aa15.73■□□□□ 0.11
HMGCR-202ENST00000343975 ZCCHC6Q5VYS8 1495 aaKnown RBP15.29■□□□□ 0.04
HMGCR-202ENST00000343975 NACADO15069 1562 aa15.19■□□□□ 0.02
HMGCR-202ENST00000343975 RB1CC1Q8TDY2 1594 aa15.19■□□□□ 0.02
HMGCR-202ENST00000343975 DCAF1Q9Y4B6 1507 aa15.12■□□□□ 0.01
HMGCR-202ENST00000343975 MYO15BQ96JP2 1530 aa15.07■□□□□ 0
HMGCR-202ENST00000343975 SHROOM4Q9ULL8 1493 aa14.99□□□□□ -0.01
HMGCR-202ENST00000343975 SCRIBQ14160 1630 aa14.84□□□□□ -0.03
HMGCR-202ENST00000343975 PABPN1Q86U42 306 aaKnown RBP eCLIP14.84□□□□□ -0.03
HMGCR-202ENST00000343975 UNC13AQ9UPW8 1703 aa14.44□□□□□ -0.1
HMGCR-202ENST00000343975 BICRAQ9NZM4 1560 aa14.42□□□□□ -0.1
HMGCR-202ENST00000343975 SUPT5HO00267 1087 aaKnown RBP14.41□□□□□ -0.1
HMGCR-202ENST00000343975 BAZ1AQ9NRL2 1556 aaPredicted RBP14.28□□□□□ -0.12
HMGCR-202ENST00000343975 CECR2Q9BXF3 1484 aa14.24□□□□□ -0.13
HMGCR-202ENST00000343975 EIF4G1Q04637 1599 aaKnown RBP14.2□□□□□ -0.14
HMGCR-202ENST00000343975 SMARCA4P51532 1647 aa14.13□□□□□ -0.15
HMGCR-202ENST00000343975 SMARCA2P51531 1590 aa14.13□□□□□ -0.15
HMGCR-202ENST00000343975 RSF1Q96T23 1441 aaPredicted RBP14.12□□□□□ -0.15
HMGCR-202ENST00000343975 MROH2BQ7Z745 1585 aa14.11□□□□□ -0.15
HMGCR-202ENST00000343975 BAZ1BQ9UIG0 1483 aaKnown RBP14.1□□□□□ -0.15
HMGCR-202ENST00000343975 CC2D2AQ9P2K1 1620 aa14.06□□□□□ -0.16
HMGCR-202ENST00000343975 ATAD2BQ9ULI0 1458 aa14.06□□□□□ -0.16
HMGCR-202ENST00000343975 NCAPD3P42695 1498 aa14□□□□□ -0.17
HMGCR-202ENST00000343975 DNAJC5BQ9UF47 199 aa13.99□□□□□ -0.17
HMGCR-202ENST00000343975 WIZO95785 1651 aa13.94□□□□□ -0.18
HMGCR-202ENST00000343975 HMGXB3Q12766 1538 aa13.91□□□□□ -0.18
HMGCR-202ENST00000343975 TOP2AP11388 1531 aaKnown RBP13.89□□□□□ -0.19
HMGCR-202ENST00000343975 PEG3Q9GZU2 1588 aa13.88□□□□□ -0.19
HMGCR-202ENST00000343975 CCDC88BA6NC98 1476 aa13.74□□□□□ -0.21
HMGCR-202ENST00000343975 CADPSQ9ULU8 1353 aa13.73□□□□□ -0.21
HMGCR-202ENST00000343975 ERCC6Q03468 1493 aa13.71□□□□□ -0.21
HMGCR-202ENST00000343975 PDS5BQ9NTI5 1447 aa13.71□□□□□ -0.22
HMGCR-202ENST00000343975 TRIM41Q8WV44 630 aa13.61□□□□□ -0.23
HMGCR-202ENST00000343975 LAMC3Q9Y6N6 1575 aa13.59□□□□□ -0.23
HMGCR-202ENST00000343975 CFTRP13569 1480 aa13.58□□□□□ -0.24
HMGCR-202ENST00000343975 CEP164Q9UPV0 1460 aa13.56□□□□□ -0.24
HMGCR-202ENST00000343975 NESP48681 1621 aa13.55□□□□□ -0.24
HMGCR-202ENST00000343975 FANCD2Q9BXW9 1451 aa13.55□□□□□ -0.24
HMGCR-202ENST00000343975 WRNQ14191 1432 aaPredicted RBP eCLIP13.46□□□□□ -0.25
HMGCR-202ENST00000343975 ABCC8Q09428 1581 aa13.46□□□□□ -0.25
HMGCR-202ENST00000343975 MRC2Q9UBG0 1479 aa13.42□□□□□ -0.26
HMGCR-202ENST00000343975 CHIC1Q5VXU3 224 aa13.41□□□□□ -0.26
HMGCR-202ENST00000343975 FAM9AQ8IZU1 332 aaPredicted RBP13.35□□□□□ -0.27
HMGCR-202ENST00000343975 SOGA1O94964 1423 aa13.3□□□□□ -0.28
HMGCR-202ENST00000343975 TOPBP1Q92547 1522 aa13.29□□□□□ -0.28
HMGCR-202ENST00000343975 PRDM2Q13029 1718 aa13.29□□□□□ -0.28
HMGCR-202ENST00000343975 DNMBPQ6XZF7 1577 aa13.29□□□□□ -0.28
HMGCR-202ENST00000343975 KIF21AQ7Z4S6 1674 aa13.28□□□□□ -0.28
HMGCR-202ENST00000343975 FGD5Q6ZNL6 1462 aa13.25□□□□□ -0.29
HMGCR-202ENST00000343975 URB2Q14146 1524 aaKnown RBP13.25□□□□□ -0.29
HMGCR-202ENST00000343975 FBLN2P98095 1184 aa13.24□□□□□ -0.29
HMGCR-202ENST00000343975 KIF27Q86VH2 1401 aa13.24□□□□□ -0.29
HMGCR-202ENST00000343975 CUX2O14529 1486 aa13.23□□□□□ -0.29
HMGCR-202ENST00000343975 IFT140Q96RY7 1462 aa13.23□□□□□ -0.29
HMGCR-202ENST00000343975 CUX1P39880 1505 aa13.22□□□□□ -0.29
HMGCR-202ENST00000343975 EHMT2Q96KQ7 1210 aa13.2□□□□□ -0.3
HMGCR-202ENST00000343975 WDR62O43379 1518 aa13.2□□□□□ -0.3
HMGCR-202ENST00000343975 POLA1P09884 1462 aaPredicted RBP13.2□□□□□ -0.3
HMGCR-202ENST00000343975 TOP2BQ02880 1626 aa13.19□□□□□ -0.3
HMGCR-202ENST00000343975 TDRD9Q8NDG6 1382 aaKnown RBP13.19□□□□□ -0.3
HMGCR-202ENST00000343975 EEA1Q15075 1411 aa13.18□□□□□ -0.3
HMGCR-202ENST00000343975 CHMP7Q8WUX9 453 aaPredicted RBP13.18□□□□□ -0.3
HMGCR-202ENST00000343975 CSRNP3Q8WYN3 585 aa13.17□□□□□ -0.3
HMGCR-202ENST00000343975 UBTFP17480 764 aaKnown RBP13.17□□□□□ -0.3
HMGCR-202ENST00000343975 SYNJ1O43426 1573 aa13.17□□□□□ -0.3
HMGCR-202ENST00000343975 RAD54L2Q9Y4B4 1467 aa13.16□□□□□ -0.3
HMGCR-202ENST00000343975 THOC2Q8NI27 1593 aaKnown RBP13.14□□□□□ -0.31
HMGCR-202ENST00000343975 BIVM-ERCC5R4GMW8 1640 aa13.11□□□□□ -0.31
HMGCR-202ENST00000343975 GAPVD1Q14C86 1478 aa13.11□□□□□ -0.31
HMGCR-202ENST00000343975 ABCA10Q8WWZ4 1543 aa13.08□□□□□ -0.31
HMGCR-202ENST00000343975 AQRO60306 1485 aaKnown RBP eCLIP13.08□□□□□ -0.321e-7■■■■■ 40.5
HMGCR-202ENST00000343975 GRIN2BQ13224 1484 aa13.08□□□□□ -0.32
HMGCR-202ENST00000343975 CARMIL1Q5VZK9 1371 aa13.05□□□□□ -0.32
HMGCR-202ENST00000343975 RANGAP1P46060 587 aaPredicted RBP13.04□□□□□ -0.32
HMGCR-202ENST00000343975 ZNF608Q9ULD9 1512 aaPredicted RBP13.02□□□□□ -0.33
HMGCR-202ENST00000343975 OSCARQ8IYS5 282 aa12.98□□□□□ -0.33
HMGCR-202ENST00000343975 WDR97A6NE52 1622 aa12.98□□□□□ -0.33
HMGCR-202ENST00000343975 FHAD1B1AJZ9 1412 aa12.98□□□□□ -0.33
HMGCR-202ENST00000343975 IGF1RP08069 1367 aa12.98□□□□□ -0.33
HMGCR-202ENST00000343975 SNAPC4Q5SXM2 1469 aa12.97□□□□□ -0.33
HMGCR-202ENST00000343975 MAGI1Q96QZ7 1491 aaPredicted RBP12.97□□□□□ -0.33
HMGCR-202ENST00000343975 ERICH3Q5RHP9 1530 aa12.95□□□□□ -0.34
HMGCR-202ENST00000343975 TARBP1Q13395 1621 aaKnown RBP12.95□□□□□ -0.34
HMGCR-202ENST00000343975 RAPGEF2Q9Y4G8 1499 aa12.95□□□□□ -0.34
HMGCR-202ENST00000343975 EIF4G3O43432 1585 aaKnown RBP12.94□□□□□ -0.34
HMGCR-202ENST00000343975 GOLGA3Q08378 1498 aa12.94□□□□□ -0.34
HMGCR-202ENST00000343975 RUSC2Q8N2Y8 1516 aa12.93□□□□□ -0.34
HMGCR-202ENST00000343975 TTBK1Q5TCY1 1321 aaPredicted RBP12.92□□□□□ -0.34
HMGCR-202ENST00000343975 SYNJ2O15056 1496 aa12.91□□□□□ -0.34
HMGCR-202ENST00000343975 APLP2Q06481 763 aa12.9□□□□□ -0.34
HMGCR-202ENST00000343975 LOC105371045A0A1W2PR82 267 aa12.89□□□□□ -0.35
HMGCR-202ENST00000343975 CUL7Q14999 1698 aa12.88□□□□□ -0.35
HMGCR-202ENST00000343975 ATP1B4Q9UN42 357 aaPredicted RBP12.88□□□□□ -0.35
HMGCR-202ENST00000343975 ABCA5Q8WWZ7 1642 aa12.87□□□□□ -0.35
HMGCR-202ENST00000343975 GRIN2AQ12879 1464 aa12.84□□□□□ -0.35
HMGCR-202ENST00000343975 CARMIL2Q6F5E8 1435 aa12.83□□□□□ -0.36
HMGCR-202ENST00000343975 PBRM1Q86U86 1689 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms