RNA–Protein interactions for RNA: ENST00000341491.8

ATF3-202, Transcript of activating transcription factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATF3, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATF3-202ENST00000341491 NISCHQ9Y2I1 1504 aa31.07■■■□□ 2.56
ATF3-202ENST00000341491 CCDC180Q9P1Z9 1646 aa27.01■■□□□ 1.91
ATF3-202ENST00000341491 ZCCHC6Q5VYS8 1495 aaKnown RBP26.1■■□□□ 1.77
ATF3-202ENST00000341491 DCAF8L2P0C7V8 631 aa25.95■■□□□ 1.74
ATF3-202ENST00000341491 ABCC9O60706 1549 aa25.84■■□□□ 1.73
ATF3-202ENST00000341491 SHROOM4Q9ULL8 1493 aa25.74■■□□□ 1.71
ATF3-202ENST00000341491 DCAF1Q9Y4B6 1507 aa25.48■■□□□ 1.67
ATF3-202ENST00000341491 SCRIBQ14160 1630 aa25.14■■□□□ 1.62
ATF3-202ENST00000341491 NACADO15069 1562 aa25.12■■□□□ 1.61
ATF3-202ENST00000341491 MYO15BQ96JP2 1530 aa25.11■■□□□ 1.61
ATF3-202ENST00000341491 RB1CC1Q8TDY2 1594 aa24.98■■□□□ 1.59
ATF3-202ENST00000341491 UNC13AQ9UPW8 1703 aa24.73■■□□□ 1.55
ATF3-202ENST00000341491 SUPT5HO00267 1087 aaKnown RBP24.66■■□□□ 1.54
ATF3-202ENST00000341491 PABPN1Q86U42 306 aaKnown RBP eCLIP24.42■■□□□ 1.5
ATF3-202ENST00000341491 BICRAQ9NZM4 1560 aa24.36■■□□□ 1.49
ATF3-202ENST00000341491 CECR2Q9BXF3 1484 aa24.32■■□□□ 1.48
ATF3-202ENST00000341491 RSF1Q96T23 1441 aaPredicted RBP24.15■■□□□ 1.46
ATF3-202ENST00000341491 MROH2BQ7Z745 1585 aa24.14■■□□□ 1.45
ATF3-202ENST00000341491 WIZO95785 1651 aa24.01■■□□□ 1.43
ATF3-202ENST00000341491 BAZ1AQ9NRL2 1556 aaPredicted RBP23.95■■□□□ 1.42
ATF3-202ENST00000341491 SMARCA4P51532 1647 aa23.95■■□□□ 1.42
ATF3-202ENST00000341491 EIF4G1Q04637 1599 aaKnown RBP23.6■■□□□ 1.37
ATF3-202ENST00000341491 TOP2AP11388 1531 aaKnown RBP23.57■■□□□ 1.36
ATF3-202ENST00000341491 ATAD2BQ9ULI0 1458 aa23.51■■□□□ 1.35
ATF3-202ENST00000341491 PEG3Q9GZU2 1588 aa23.49■■□□□ 1.35
ATF3-202ENST00000341491 CHIC1Q5VXU3 224 aa23.45■■□□□ 1.35
ATF3-202ENST00000341491 SMARCA2P51531 1590 aa23.43■■□□□ 1.34
ATF3-202ENST00000341491 CCDC88BA6NC98 1476 aa23.4■■□□□ 1.34
ATF3-202ENST00000341491 BAZ1BQ9UIG0 1483 aaKnown RBP23.4■■□□□ 1.34
ATF3-202ENST00000341491 CC2D2AQ9P2K1 1620 aa23.3■■□□□ 1.32
ATF3-202ENST00000341491 NCAPD3P42695 1498 aa23.19■■□□□ 1.3
ATF3-202ENST00000341491 HMGXB3Q12766 1538 aa23.18■■□□□ 1.3
ATF3-202ENST00000341491 ABCC8Q09428 1581 aa23.08■■□□□ 1.29
ATF3-202ENST00000341491 TRIM41Q8WV44 630 aa23■■□□□ 1.27
ATF3-202ENST00000341491 DNAJC5BQ9UF47 199 aa22.96■■□□□ 1.27
ATF3-202ENST00000341491 FAM9AQ8IZU1 332 aaPredicted RBP22.84■■□□□ 1.25
ATF3-202ENST00000341491 SYNJ1O43426 1573 aa22.75■■□□□ 1.23
ATF3-202ENST00000341491 LOC105371045A0A1W2PR82 267 aa22.74■■□□□ 1.23
ATF3-202ENST00000341491 CFTRP13569 1480 aa22.73■■□□□ 1.23
ATF3-202ENST00000341491 NESP48681 1621 aa22.72■■□□□ 1.23
ATF3-202ENST00000341491 EHMT2Q96KQ7 1210 aa22.72■■□□□ 1.23
ATF3-202ENST00000341491 WRNQ14191 1432 aaPredicted RBP eCLIP22.71■■□□□ 1.23
ATF3-202ENST00000341491 PRDM2Q13029 1718 aa22.7■■□□□ 1.22
ATF3-202ENST00000341491 CADPSQ9ULU8 1353 aa22.66■■□□□ 1.22
ATF3-202ENST00000341491 SOGA1O94964 1423 aa22.57■■□□□ 1.2
ATF3-202ENST00000341491 RUSC2Q8N2Y8 1516 aa22.56■■□□□ 1.2
ATF3-202ENST00000341491 CUX1P39880 1505 aa22.55■■□□□ 1.2
ATF3-202ENST00000341491 TOP2BQ02880 1626 aa22.52■■□□□ 1.2
ATF3-202ENST00000341491 BIVM-ERCC5R4GMW8 1640 aa22.5■■□□□ 1.19
ATF3-202ENST00000341491 FANCD2Q9BXW9 1451 aa22.49■■□□□ 1.19
ATF3-202ENST00000341491 LAMC3Q9Y6N6 1575 aa22.44■■□□□ 1.18
ATF3-202ENST00000341491 KIF21AQ7Z4S6 1674 aa22.43■■□□□ 1.18
ATF3-202ENST00000341491 CEP164Q9UPV0 1460 aa22.33■■□□□ 1.16
ATF3-202ENST00000341491 FGD5Q6ZNL6 1462 aa22.29■■□□□ 1.16
ATF3-202ENST00000341491 URB2Q14146 1524 aaKnown RBP22.27■■□□□ 1.16
ATF3-202ENST00000341491 TOPBP1Q92547 1522 aa22.26■■□□□ 1.15
ATF3-202ENST00000341491 DNMBPQ6XZF7 1577 aa22.25■■□□□ 1.15
ATF3-202ENST00000341491 PDS5BQ9NTI5 1447 aa22.25■■□□□ 1.15
ATF3-202ENST00000341491 CSRNP3Q8WYN3 585 aa22.24■■□□□ 1.15
ATF3-202ENST00000341491 RAD54L2Q9Y4B4 1467 aa22.19■■□□□ 1.14
ATF3-202ENST00000341491 EEA1Q15075 1411 aa22.18■■□□□ 1.14
ATF3-202ENST00000341491 POLA1P09884 1462 aaPredicted RBP22.16■■□□□ 1.14
ATF3-202ENST00000341491 CUX2O14529 1486 aa22.15■■□□□ 1.14
ATF3-202ENST00000341491 RAPGEF2Q9Y4G8 1499 aa22.09■■□□□ 1.13
ATF3-202ENST00000341491 KIF27Q86VH2 1401 aa22.08■■□□□ 1.12
ATF3-202ENST00000341491 UBTFP17480 764 aaKnown RBP22.07■■□□□ 1.12
ATF3-202ENST00000341491 ERCC6Q03468 1493 aa22.06■■□□□ 1.12
ATF3-202ENST00000341491 KIF21BO75037 1637 aa22.06■■□□□ 1.12
ATF3-202ENST00000341491 GOLGA3Q08378 1498 aa22.06■■□□□ 1.12
ATF3-202ENST00000341491 MRC2Q9UBG0 1479 aa22.04■■□□□ 1.12
ATF3-202ENST00000341491 WDR97A6NE52 1622 aa22.01■■□□□ 1.11
ATF3-202ENST00000341491 RANGAP1P46060 587 aaPredicted RBP22■■□□□ 1.11
ATF3-202ENST00000341491 ABCA10Q8WWZ4 1543 aa21.98■■□□□ 1.11
ATF3-202ENST00000341491 CEP162Q5TB80 1403 aa21.96■■□□□ 1.11
ATF3-202ENST00000341491 TDRD9Q8NDG6 1382 aaKnown RBP21.95■■□□□ 1.1
ATF3-202ENST00000341491 PRXQ9BXM0 1461 aa21.95■■□□□ 1.1
ATF3-202ENST00000341491 THOC2Q8NI27 1593 aaKnown RBP21.95■■□□□ 1.1
ATF3-202ENST00000341491 TNIKQ9UKE5 1360 aa21.93■■□□□ 1.1
ATF3-202ENST00000341491 TARBP1Q13395 1621 aaKnown RBP21.93■■□□□ 1.1
ATF3-202ENST00000341491 IGF1RP08069 1367 aa21.93■■□□□ 1.1
ATF3-202ENST00000341491 WDR62O43379 1518 aa21.91■■□□□ 1.1
ATF3-202ENST00000341491 ABCA5Q8WWZ7 1642 aa21.88■■□□□ 1.09
ATF3-202ENST00000341491 ERICH3Q5RHP9 1530 aa21.86■■□□□ 1.09
ATF3-202ENST00000341491 PPARGC1BQ86YN6 1023 aaKnown RBP21.84■■□□□ 1.09
ATF3-202ENST00000341491 ZNF608Q9ULD9 1512 aaPredicted RBP21.83■■□□□ 1.08
ATF3-202ENST00000341491 CARMIL1Q5VZK9 1371 aa21.82■■□□□ 1.08
ATF3-202ENST00000341491 AQRO60306 1485 aaKnown RBP eCLIP21.82■■□□□ 1.088e-7■□□□□ 9.1
ATF3-202ENST00000341491 GAPVD1Q14C86 1478 aa21.81■■□□□ 1.08
ATF3-202ENST00000341491 PBRM1Q86U86 1689 aa21.79■■□□□ 1.08
ATF3-202ENST00000341491 CLIP1P30622 1438 aa21.75■■□□□ 1.07
ATF3-202ENST00000341491 CUL7Q14999 1698 aa21.73■■□□□ 1.07
ATF3-202ENST00000341491 IFT140Q96RY7 1462 aa21.72■■□□□ 1.07
ATF3-202ENST00000341491 TTBK1Q5TCY1 1321 aaPredicted RBP21.71■■□□□ 1.07
ATF3-202ENST00000341491 EIF4G3O43432 1585 aaKnown RBP21.7■■□□□ 1.06
ATF3-202ENST00000341491 PCGF6Q9BYE7 350 aa21.65■■□□□ 1.06
ATF3-202ENST00000341491 ADAMTS12P58397 1594 aa21.61■■□□□ 1.05
ATF3-202ENST00000341491 CTTNBP2Q8WZ74 1663 aa21.61■■□□□ 1.05
ATF3-202ENST00000341491 ARAP1Q96P48 1450 aa21.6■■□□□ 1.05
ATF3-202ENST00000341491 GRIN2BQ13224 1484 aa21.59■■□□□ 1.05
ATF3-202ENST00000341491 SNAPC4Q5SXM2 1469 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms