RNA–Protein interactions for RNA: ENST00000341360.6

ATP2B4-201, Transcript of ATPase plasma membrane Ca2+ transporting 4, humanhuman

TSL 1 (best) BASIC

Gene ATP2B4, Length 4,658 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATP2B4-201ENST00000341360 NISCHQ9Y2I1 1504 aa13.37□□□□□ -0.27
ATP2B4-201ENST00000341360 DCAF8L2P0C7V8 631 aa13.26□□□□□ -0.29
ATP2B4-201ENST00000341360 SUPT5HO00267 1087 aaKnown RBP12.44□□□□□ -0.42
ATP2B4-201ENST00000341360 FAM9AQ8IZU1 332 aaPredicted RBP12.35□□□□□ -0.43
ATP2B4-201ENST00000341360 APLP2Q06481 763 aa12.2□□□□□ -0.46
ATP2B4-201ENST00000341360 SHROOM4Q9ULL8 1493 aa12.17□□□□□ -0.46
ATP2B4-201ENST00000341360 PELP1Q8IZL8 1130 aaKnown RBP12.07□□□□□ -0.48
ATP2B4-201ENST00000341360 TRIM41Q8WV44 630 aa11.74□□□□□ -0.53
ATP2B4-201ENST00000341360 ZEB1P37275 1124 aaPredicted RBP11.72□□□□□ -0.53
ATP2B4-201ENST00000341360 EHMT2Q96KQ7 1210 aa11.72□□□□□ -0.53
ATP2B4-201ENST00000341360 HRCP23327 699 aa11.67□□□□□ -0.54
ATP2B4-201ENST00000341360 PCGF6Q9BYE7 350 aa11.61□□□□□ -0.55
ATP2B4-201ENST00000341360 UBTFP17480 764 aaKnown RBP11.59□□□□□ -0.55
ATP2B4-201ENST00000341360 CCER1Q8TC90 406 aaPredicted RBP11.53□□□□□ -0.56
ATP2B4-201ENST00000341360 ATP1B4Q9UN42 357 aaPredicted RBP11.53□□□□□ -0.56
ATP2B4-201ENST00000341360 CENPBP07199 599 aaPredicted RBP11.5□□□□□ -0.57
ATP2B4-201ENST00000341360 CHIC1Q5VXU3 224 aa11.47□□□□□ -0.57
ATP2B4-201ENST00000341360 RANGAP1P46060 587 aaPredicted RBP11.41□□□□□ -0.58
ATP2B4-201ENST00000341360 TRIM26Q12899 539 aaPredicted RBP11.4□□□□□ -0.58
ATP2B4-201ENST00000341360 TTBK1Q5TCY1 1321 aaPredicted RBP11.36□□□□□ -0.59
ATP2B4-201ENST00000341360 MYT1Q01538 1121 aa11.36□□□□□ -0.59
ATP2B4-201ENST00000341360 NEFLP07196 543 aa11.33□□□□□ -0.6
ATP2B4-201ENST00000341360 ERICH6Q7L0X2 663 aa11.29□□□□□ -0.6
ATP2B4-201ENST00000341360 ZCCHC6Q5VYS8 1495 aaKnown RBP11.28□□□□□ -0.6
ATP2B4-201ENST00000341360 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.26□□□□□ -0.61
ATP2B4-201ENST00000341360 HNRNPUL2Q1KMD3 747 aaKnown RBP11.26□□□□□ -0.61
ATP2B4-201ENST00000341360 DCAF1Q9Y4B6 1507 aa11.25□□□□□ -0.61
ATP2B4-201ENST00000341360 MYT1LQ9UL68 1186 aa11.25□□□□□ -0.61
ATP2B4-201ENST00000341360 ABCC9O60706 1549 aa11.22□□□□□ -0.61
ATP2B4-201ENST00000341360 CCDC180Q9P1Z9 1646 aa11.2□□□□□ -0.62
ATP2B4-201ENST00000341360 PPARGC1BQ86YN6 1023 aaKnown RBP11.16□□□□□ -0.62
ATP2B4-201ENST00000341360 LOC105371045A0A1W2PR82 267 aa11.12□□□□□ -0.63
ATP2B4-201ENST00000341360 PABPN1Q86U42 306 aaKnown RBP eCLIP11.11□□□□□ -0.63
ATP2B4-201ENST00000341360 MYO15BQ96JP2 1530 aa11.02□□□□□ -0.64
ATP2B4-201ENST00000341360 ITGAEP38570 1179 aa11□□□□□ -0.65
ATP2B4-201ENST00000341360 DAXXQ9UER7 740 aaPredicted RBP10.98□□□□□ -0.65
ATP2B4-201ENST00000341360 CDK11AQ9UQ88 783 aaPredicted RBP10.94□□□□□ -0.66
ATP2B4-201ENST00000341360 POLR3GLQ9BT43 218 aa10.92□□□□□ -0.66
ATP2B4-201ENST00000341360 FAM50AQ14320 339 aaKnown RBP10.9□□□□□ -0.66
ATP2B4-201ENST00000341360 TRIM52Q96A61 297 aa10.87□□□□□ -0.67
ATP2B4-201ENST00000341360 YTHDC1Q96MU7 727 aaKnown RBP10.86□□□□□ -0.67
ATP2B4-201ENST00000341360 DIEXFQ68CQ4 756 aaKnown RBP10.86□□□□□ -0.67
ATP2B4-201ENST00000341360 FBLN2P98095 1184 aa10.85□□□□□ -0.67
ATP2B4-201ENST00000341360 SLC4A1APQ9BWU0 796 aaKnown RBP10.84□□□□□ -0.67
ATP2B4-201ENST00000341360 ACIN1Q9UKV3 1341 aaKnown RBP10.84□□□□□ -0.67
ATP2B4-201ENST00000341360 CSRNP3Q8WYN3 585 aa10.83□□□□□ -0.68
ATP2B4-201ENST00000341360 SCRIBQ14160 1630 aa10.78□□□□□ -0.68
ATP2B4-201ENST00000341360 NPM1P06748 294 aaKnown RBP eCLIP10.78□□□□□ -0.68
ATP2B4-201ENST00000341360 NEFMP07197 916 aa10.78□□□□□ -0.68
ATP2B4-201ENST00000341360 RB1CC1Q8TDY2 1594 aa10.75□□□□□ -0.69
ATP2B4-201ENST00000341360 ESF1Q9H501 851 aaKnown RBP10.75□□□□□ -0.69
ATP2B4-201ENST00000341360 ZBTB47Q9UFB7 747 aaPredicted RBP10.74□□□□□ -0.69
ATP2B4-201ENST00000341360 GTF3C3Q9Y5Q9 886 aa10.74□□□□□ -0.69
ATP2B4-201ENST00000341360 SCAF1Q9H7N4 1312 aaKnown RBP10.73□□□□□ -0.69
ATP2B4-201ENST00000341360 ANP32CO43423 234 aa10.72□□□□□ -0.69
ATP2B4-201ENST00000341360 CLSPNQ9HAW4 1339 aa10.71□□□□□ -0.69
ATP2B4-201ENST00000341360 ZNF316A6NFI3 1004 aaPredicted RBP10.7□□□□□ -0.7
ATP2B4-201ENST00000341360 RSF1Q96T23 1441 aaPredicted RBP10.68□□□□□ -0.7
ATP2B4-201ENST00000341360 NACADO15069 1562 aa10.67□□□□□ -0.7
ATP2B4-201ENST00000341360 EEA1Q15075 1411 aa10.65□□□□□ -0.7
ATP2B4-201ENST00000341360 NEUROD1Q13562 356 aa10.64□□□□□ -0.71
ATP2B4-201ENST00000341360 BCANQ96GW7 911 aa10.63□□□□□ -0.71
ATP2B4-201ENST00000341360 RTL5Q5HYW3 569 aaPredicted RBP10.62□□□□□ -0.71
ATP2B4-201ENST00000341360 ZNF326Q5BKZ1 582 aaKnown RBP10.61□□□□□ -0.71
ATP2B4-201ENST00000341360 CNGB1Q14028 1251 aaPredicted RBP10.58□□□□□ -0.72
ATP2B4-201ENST00000341360 ZNF777Q9ULD5 760 aaPredicted RBP10.58□□□□□ -0.72
ATP2B4-201ENST00000341360 STAG3Q9UJ98 1225 aa10.58□□□□□ -0.72
ATP2B4-201ENST00000341360 TSPY4P0CV99 314 aa10.57□□□□□ -0.72
ATP2B4-201ENST00000341360 TSPY10P0CW01 314 aa10.57□□□□□ -0.72
ATP2B4-201ENST00000341360 P3H3Q8IVL6 736 aa10.56□□□□□ -0.72
ATP2B4-201ENST00000341360 TONSLQ96HA7 1378 aa10.56□□□□□ -0.72
ATP2B4-201ENST00000341360 CHMP7Q8WUX9 453 aaPredicted RBP10.55□□□□□ -0.72
ATP2B4-201ENST00000341360 CANXP27824 592 aaKnown RBP10.55□□□□□ -0.72
ATP2B4-201ENST00000341360 MTUS2Q5JR59 1369 aa10.52□□□□□ -0.73
ATP2B4-201ENST00000341360 BAZ1BQ9UIG0 1483 aaKnown RBP10.47□□□□□ -0.73
ATP2B4-201ENST00000341360 TNIKQ9UKE5 1360 aa10.47□□□□□ -0.73
ATP2B4-201ENST00000341360 CEP162Q5TB80 1403 aa10.45□□□□□ -0.74
ATP2B4-201ENST00000341360 PLEKHD1A6NEE1 506 aa10.45□□□□□ -0.74
ATP2B4-201ENST00000341360 CHGAP10645 457 aaKnown RBP10.45□□□□□ -0.74
ATP2B4-201ENST00000341360 KIF27Q86VH2 1401 aa10.44□□□□□ -0.74
ATP2B4-201ENST00000341360 ARID3CA6NKF2 412 aa10.44□□□□□ -0.74
ATP2B4-201ENST00000341360 SLC24A1O60721 1099 aa10.44□□□□□ -0.74
ATP2B4-201ENST00000341360 GOLGA3Q08378 1498 aa10.43□□□□□ -0.74
ATP2B4-201ENST00000341360 CLIP1P30622 1438 aa10.43□□□□□ -0.74
ATP2B4-201ENST00000341360 BAZ1AQ9NRL2 1556 aaPredicted RBP10.42□□□□□ -0.74
ATP2B4-201ENST00000341360 PLPPR3Q6T4P5 718 aa10.42□□□□□ -0.74
ATP2B4-201ENST00000341360 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.42□□□□□ -0.74
ATP2B4-201ENST00000341360 WRNQ14191 1432 aaPredicted RBP eCLIP10.4□□□□□ -0.74
ATP2B4-201ENST00000341360 TRHP20396 242 aaPredicted RBP10.4□□□□□ -0.74
ATP2B4-201ENST00000341360 CDCA8Q53HL2 280 aa10.39□□□□□ -0.75
ATP2B4-201ENST00000341360 UPF2Q9HAU5 1272 aaKnown RBP10.37□□□□□ -0.75
ATP2B4-201ENST00000341360 CEP164Q9UPV0 1460 aa10.37□□□□□ -0.75
ATP2B4-201ENST00000341360 MIER1Q8N108 512 aa10.36□□□□□ -0.75
ATP2B4-201ENST00000341360 ANP32AP39687 249 aaKnown RBP10.35□□□□□ -0.75
ATP2B4-201ENST00000341360 ERCC6Q03468 1493 aa10.35□□□□□ -0.75
ATP2B4-201ENST00000341360 FHAD1B1AJZ9 1412 aa10.33□□□□□ -0.76
ATP2B4-201ENST00000341360 WDR43Q15061 677 aaKnown RBP eCLIP10.33□□□□□ -0.76
ATP2B4-201ENST00000341360 EIF5BO60841 1220 aaKnown RBP10.32□□□□□ -0.76
ATP2B4-201ENST00000341360 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.32□□□□□ -0.765e-6■■■■□ 19.5
ATP2B4-201ENST00000341360 NPM2Q86SE8 214 aaKnown RBP10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms