RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 NISCHQ9Y2I1 1504 aa39.5■■■■□ 3.91
CLDN4-201ENST00000340958 CCDC180Q9P1Z9 1646 aa35.11■■■■□ 3.21
CLDN4-201ENST00000340958 ABCC9O60706 1549 aa34.29■■■■□ 3.08
CLDN4-201ENST00000340958 ZCCHC6Q5VYS8 1495 aaKnown RBP33.02■■■□□ 2.88
CLDN4-201ENST00000340958 RB1CC1Q8TDY2 1594 aa32.99■■■□□ 2.87
CLDN4-201ENST00000340958 NACADO15069 1562 aa32.96■■■□□ 2.87
CLDN4-201ENST00000340958 DCAF8L2P0C7V8 631 aa32.95■■■□□ 2.87
CLDN4-201ENST00000340958 MYO15BQ96JP2 1530 aa32.76■■■□□ 2.84
CLDN4-201ENST00000340958 DCAF1Q9Y4B6 1507 aa32.66■■■□□ 2.82
CLDN4-201ENST00000340958 UNC13AQ9UPW8 1703 aa32.36■■■□□ 2.77
CLDN4-201ENST00000340958 SHROOM4Q9ULL8 1493 aa32.16■■■□□ 2.74
CLDN4-201ENST00000340958 SCRIBQ14160 1630 aa32.08■■■□□ 2.73
CLDN4-201ENST00000340958 PABPN1Q86U42 306 aaKnown RBP eCLIP32.04■■■□□ 2.72
CLDN4-201ENST00000340958 BICRAQ9NZM4 1560 aa32.04■■■□□ 2.72
CLDN4-201ENST00000340958 DNAJC5BQ9UF47 199 aa31.41■■■□□ 2.62
CLDN4-201ENST00000340958 EIF4G1Q04637 1599 aaKnown RBP31.17■■■□□ 2.58
CLDN4-201ENST00000340958 CC2D2AQ9P2K1 1620 aa31.04■■■□□ 2.56
CLDN4-201ENST00000340958 SUPT5HO00267 1087 aaKnown RBP30.89■■■□□ 2.54
CLDN4-201ENST00000340958 CECR2Q9BXF3 1484 aa30.79■■■□□ 2.52
CLDN4-201ENST00000340958 SMARCA4P51532 1647 aa30.67■■■□□ 2.5
CLDN4-201ENST00000340958 BAZ1AQ9NRL2 1556 aaPredicted RBP30.61■■■□□ 2.49
CLDN4-201ENST00000340958 RSF1Q96T23 1441 aaPredicted RBP30.49■■■□□ 2.47
CLDN4-201ENST00000340958 MROH2BQ7Z745 1585 aa30.47■■■□□ 2.47
CLDN4-201ENST00000340958 ATAD2BQ9ULI0 1458 aa30.45■■■□□ 2.46
CLDN4-201ENST00000340958 SMARCA2P51531 1590 aa30.41■■■□□ 2.46
CLDN4-201ENST00000340958 NCAPD3P42695 1498 aa30.4■■■□□ 2.46
CLDN4-201ENST00000340958 PEG3Q9GZU2 1588 aa30.34■■■□□ 2.45
CLDN4-201ENST00000340958 HMGXB3Q12766 1538 aa30.29■■■□□ 2.44
CLDN4-201ENST00000340958 BAZ1BQ9UIG0 1483 aaKnown RBP30.21■■■□□ 2.43
CLDN4-201ENST00000340958 WIZO95785 1651 aa30.17■■■□□ 2.42
CLDN4-201ENST00000340958 TOP2AP11388 1531 aaKnown RBP29.85■■■□□ 2.37
CLDN4-201ENST00000340958 NESP48681 1621 aa29.72■■■□□ 2.35
CLDN4-201ENST00000340958 LAMC3Q9Y6N6 1575 aa29.61■■■□□ 2.33
CLDN4-201ENST00000340958 CCDC88BA6NC98 1476 aa29.56■■■□□ 2.32
CLDN4-201ENST00000340958 ERCC6Q03468 1493 aa29.53■■■□□ 2.32
CLDN4-201ENST00000340958 CADPSQ9ULU8 1353 aa29.51■■■□□ 2.32
CLDN4-201ENST00000340958 KIF21AQ7Z4S6 1674 aa29.4■■■□□ 2.3
CLDN4-201ENST00000340958 CFTRP13569 1480 aa29.37■■■□□ 2.29
CLDN4-201ENST00000340958 PDS5BQ9NTI5 1447 aa29.37■■■□□ 2.29
CLDN4-201ENST00000340958 CHIC1Q5VXU3 224 aa29.36■■■□□ 2.29
CLDN4-201ENST00000340958 THOC2Q8NI27 1593 aaKnown RBP29.26■■■□□ 2.27
CLDN4-201ENST00000340958 PRDM2Q13029 1718 aa29.24■■■□□ 2.27
CLDN4-201ENST00000340958 FANCD2Q9BXW9 1451 aa29.2■■■□□ 2.27
CLDN4-201ENST00000340958 CUX2O14529 1486 aa29.17■■■□□ 2.26
CLDN4-201ENST00000340958 CEP164Q9UPV0 1460 aa29.16■■■□□ 2.26
CLDN4-201ENST00000340958 MRC2Q9UBG0 1479 aa29.1■■■□□ 2.25
CLDN4-201ENST00000340958 TRIM41Q8WV44 630 aa29.06■■■□□ 2.24
CLDN4-201ENST00000340958 WDR62O43379 1518 aa29.02■■■□□ 2.24
CLDN4-201ENST00000340958 URB2Q14146 1524 aaKnown RBP28.93■■■□□ 2.22
CLDN4-201ENST00000340958 ABCC8Q09428 1581 aa28.89■■■□□ 2.22
CLDN4-201ENST00000340958 WRNQ14191 1432 aaPredicted RBP eCLIP28.77■■■□□ 2.2
CLDN4-201ENST00000340958 TOPBP1Q92547 1522 aa28.76■■■□□ 2.19
CLDN4-201ENST00000340958 DNMBPQ6XZF7 1577 aa28.73■■■□□ 2.19
CLDN4-201ENST00000340958 CUX1P39880 1505 aa28.58■■■□□ 2.17
CLDN4-201ENST00000340958 SYNJ1O43426 1573 aa28.58■■■□□ 2.17
CLDN4-201ENST00000340958 FAM9AQ8IZU1 332 aaPredicted RBP28.55■■■□□ 2.16
CLDN4-201ENST00000340958 IFT140Q96RY7 1462 aa28.53■■■□□ 2.16
CLDN4-201ENST00000340958 POLA1P09884 1462 aaPredicted RBP28.52■■■□□ 2.16
CLDN4-201ENST00000340958 TOP2BQ02880 1626 aa28.48■■■□□ 2.15
CLDN4-201ENST00000340958 FGD5Q6ZNL6 1462 aa28.46■■■□□ 2.15
CLDN4-201ENST00000340958 TARBP1Q13395 1621 aaKnown RBP28.46■■■□□ 2.15
CLDN4-201ENST00000340958 ZNF608Q9ULD9 1512 aaPredicted RBP28.45■■■□□ 2.14
CLDN4-201ENST00000340958 BIVM-ERCC5R4GMW8 1640 aa28.42■■■□□ 2.14
CLDN4-201ENST00000340958 RAD54L2Q9Y4B4 1467 aa28.4■■■□□ 2.14
CLDN4-201ENST00000340958 SOGA1O94964 1423 aa28.37■■■□□ 2.13
CLDN4-201ENST00000340958 EIF4G3O43432 1585 aaKnown RBP28.36■■■□□ 2.13
CLDN4-201ENST00000340958 LOC105371045A0A1W2PR82 267 aa28.28■■■□□ 2.12
CLDN4-201ENST00000340958 AQRO60306 1485 aaKnown RBP eCLIP28.27■■■□□ 2.12
CLDN4-201ENST00000340958 WDR97A6NE52 1622 aa28.27■■■□□ 2.12
CLDN4-201ENST00000340958 EEA1Q15075 1411 aa28.25■■■□□ 2.11
CLDN4-201ENST00000340958 TDRD9Q8NDG6 1382 aaKnown RBP28.22■■■□□ 2.11
CLDN4-201ENST00000340958 EHMT2Q96KQ7 1210 aa28.21■■■□□ 2.11
CLDN4-201ENST00000340958 RUSC2Q8N2Y8 1516 aa28.19■■■□□ 2.1
CLDN4-201ENST00000340958 DNAJC5Q9H3Z4 198 aa28.19■■■□□ 2.1
CLDN4-201ENST00000340958 ABCA10Q8WWZ4 1543 aa28.17■■■□□ 2.1
CLDN4-201ENST00000340958 CSRNP3Q8WYN3 585 aa28.17■■■□□ 2.1
CLDN4-201ENST00000340958 ABCA5Q8WWZ7 1642 aa28.09■■■□□ 2.09
CLDN4-201ENST00000340958 KIF27Q86VH2 1401 aa28.08■■■□□ 2.09
CLDN4-201ENST00000340958 PBRM1Q86U86 1689 aa28.07■■■□□ 2.08
CLDN4-201ENST00000340958 GAPVD1Q14C86 1478 aa28.06■■■□□ 2.08
CLDN4-201ENST00000340958 GRIN2BQ13224 1484 aa28.03■■■□□ 2.08
CLDN4-201ENST00000340958 SNAPC4Q5SXM2 1469 aa28.02■■■□□ 2.08
CLDN4-201ENST00000340958 CHD1O14646 1710 aa28.01■■■□□ 2.08
CLDN4-201ENST00000340958 MAGI1Q96QZ7 1491 aaPredicted RBP27.96■■■□□ 2.07
CLDN4-201ENST00000340958 OSCARQ8IYS5 282 aa27.95■■■□□ 2.07
CLDN4-201ENST00000340958 FBLN2P98095 1184 aa27.9■■■□□ 2.06
CLDN4-201ENST00000340958 UBTFP17480 764 aaKnown RBP27.89■■■□□ 2.06
CLDN4-201ENST00000340958 GOLGA3Q08378 1498 aa27.87■■■□□ 2.05
CLDN4-201ENST00000340958 SYNJ2O15056 1496 aa27.85■■■□□ 2.05
CLDN4-201ENST00000340958 ERICH3Q5RHP9 1530 aa27.83■■■□□ 2.05
CLDN4-201ENST00000340958 KIF21BO75037 1637 aa27.83■■■□□ 2.05
CLDN4-201ENST00000340958 ADAMTS12P58397 1594 aa27.82■■■□□ 2.04
CLDN4-201ENST00000340958 CHMP7Q8WUX9 453 aaPredicted RBP27.81■■■□□ 2.04
CLDN4-201ENST00000340958 IGF1RP08069 1367 aa27.8■■■□□ 2.04
CLDN4-201ENST00000340958 PRXQ9BXM0 1461 aa27.75■■■□□ 2.03
CLDN4-201ENST00000340958 RAPGEF2Q9Y4G8 1499 aa27.75■■■□□ 2.03
CLDN4-201ENST00000340958 TNIKQ9UKE5 1360 aa27.72■■■□□ 2.03
CLDN4-201ENST00000340958 FHAD1B1AJZ9 1412 aa27.72■■■□□ 2.03
CLDN4-201ENST00000340958 CARMIL1Q5VZK9 1371 aa27.7■■■□□ 2.02
CLDN4-201ENST00000340958 GRIN2AQ12879 1464 aa27.69■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms