RNA–Protein interactions for RNA: ENST00000340647.8

BRCC3-202, Transcript of BRCA1/BRCA2-containing complex subunit 3, humanhuman

APPRIS P2 TSL 2 BASIC

Gene BRCC3, Length 1,101 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3-202ENST00000340647 NISCHQ9Y2I1 1504 aa42.56■■■■■ 4.4
BRCC3-202ENST00000340647 CCDC180Q9P1Z9 1646 aa38.01■■■■□ 3.68
BRCC3-202ENST00000340647 ABCC9O60706 1549 aa37.61■■■■□ 3.61
BRCC3-202ENST00000340647 RB1CC1Q8TDY2 1594 aa35.93■■■■□ 3.34
BRCC3-202ENST00000340647 NACADO15069 1562 aa35.81■■■■□ 3.32
BRCC3-202ENST00000340647 DCAF8L2P0C7V8 631 aa35.57■■■■□ 3.28
BRCC3-202ENST00000340647 DNAJC5BQ9UF47 199 aa35.57■■■■□ 3.28
BRCC3-202ENST00000340647 MYO15BQ96JP2 1530 aa35.46■■■■□ 3.27
BRCC3-202ENST00000340647 ZCCHC6Q5VYS8 1495 aaKnown RBP35.36■■■■□ 3.25
BRCC3-202ENST00000340647 UNC13AQ9UPW8 1703 aa35.35■■■■□ 3.25
BRCC3-202ENST00000340647 DCAF1Q9Y4B6 1507 aa35.16■■■■□ 3.22
BRCC3-202ENST00000340647 PABPN1Q86U42 306 aaKnown RBP eCLIP35.07■■■■□ 3.2
BRCC3-202ENST00000340647 BICRAQ9NZM4 1560 aa35.05■■■■□ 3.2
BRCC3-202ENST00000340647 SCRIBQ14160 1630 aa34.66■■■■□ 3.14
BRCC3-202ENST00000340647 SHROOM4Q9ULL8 1493 aa34.4■■■■□ 3.1
BRCC3-202ENST00000340647 EIF4G1Q04637 1599 aaKnown RBP34.05■■■■□ 3.04
BRCC3-202ENST00000340647 CC2D2AQ9P2K1 1620 aa34.04■■■■□ 3.04
BRCC3-202ENST00000340647 CECR2Q9BXF3 1484 aa33.82■■■■□ 3
BRCC3-202ENST00000340647 SMARCA4P51532 1647 aa33.13■■■□□ 2.89
BRCC3-202ENST00000340647 NCAPD3P42695 1498 aa33.08■■■□□ 2.89
BRCC3-202ENST00000340647 ATAD2BQ9ULI0 1458 aa33.05■■■□□ 2.88
BRCC3-202ENST00000340647 BAZ1AQ9NRL2 1556 aaPredicted RBP32.95■■■□□ 2.86
BRCC3-202ENST00000340647 SMARCA2P51531 1590 aa32.9■■■□□ 2.86
BRCC3-202ENST00000340647 HMGXB3Q12766 1538 aa32.85■■■□□ 2.85
BRCC3-202ENST00000340647 MROH2BQ7Z745 1585 aa32.83■■■□□ 2.85
BRCC3-202ENST00000340647 PEG3Q9GZU2 1588 aa32.83■■■□□ 2.85
BRCC3-202ENST00000340647 DNAJC5Q9H3Z4 198 aa32.8■■■□□ 2.84
BRCC3-202ENST00000340647 BAZ1BQ9UIG0 1483 aaKnown RBP32.67■■■□□ 2.82
BRCC3-202ENST00000340647 NESP48681 1621 aa32.49■■■□□ 2.79
BRCC3-202ENST00000340647 WIZO95785 1651 aa32.49■■■□□ 2.79
BRCC3-202ENST00000340647 CUX2O14529 1486 aa32.42■■■□□ 2.78
BRCC3-202ENST00000340647 ERCC6Q03468 1493 aa32.35■■■□□ 2.77
BRCC3-202ENST00000340647 RSF1Q96T23 1441 aaPredicted RBP32.26■■■□□ 2.76
BRCC3-202ENST00000340647 LAMC3Q9Y6N6 1575 aa32.24■■■□□ 2.75
BRCC3-202ENST00000340647 KIF21AQ7Z4S6 1674 aa32.11■■■□□ 2.73
BRCC3-202ENST00000340647 THOC2Q8NI27 1593 aaKnown RBP32.09■■■□□ 2.73
BRCC3-202ENST00000340647 CADPSQ9ULU8 1353 aa32.05■■■□□ 2.72
BRCC3-202ENST00000340647 TOP2AP11388 1531 aaKnown RBP32.01■■■□□ 2.72
BRCC3-202ENST00000340647 PDS5BQ9NTI5 1447 aa31.96■■■□□ 2.71
BRCC3-202ENST00000340647 CFTRP13569 1480 aa31.81■■■□□ 2.68
BRCC3-202ENST00000340647 MRC2Q9UBG0 1479 aa31.72■■■□□ 2.67
BRCC3-202ENST00000340647 WDR62O43379 1518 aa31.7■■■□□ 2.66
BRCC3-202ENST00000340647 FANCD2Q9BXW9 1451 aa31.69■■■□□ 2.66
BRCC3-202ENST00000340647 CCDC88BA6NC98 1476 aa31.68■■■□□ 2.66
BRCC3-202ENST00000340647 CEP164Q9UPV0 1460 aa31.65■■■□□ 2.66
BRCC3-202ENST00000340647 PRDM2Q13029 1718 aa31.59■■■□□ 2.65
BRCC3-202ENST00000340647 URB2Q14146 1524 aaKnown RBP31.48■■■□□ 2.63
BRCC3-202ENST00000340647 TRIM41Q8WV44 630 aa31.19■■■□□ 2.58
BRCC3-202ENST00000340647 TOPBP1Q92547 1522 aa31.17■■■□□ 2.58
BRCC3-202ENST00000340647 DNMBPQ6XZF7 1577 aa31.07■■■□□ 2.56
BRCC3-202ENST00000340647 ZNF608Q9ULD9 1512 aaPredicted RBP31.03■■■□□ 2.56
BRCC3-202ENST00000340647 ABCC8Q09428 1581 aa31.02■■■□□ 2.56
BRCC3-202ENST00000340647 IFT140Q96RY7 1462 aa31.01■■■□□ 2.55
BRCC3-202ENST00000340647 SUPT5HO00267 1087 aaKnown RBP31■■■□□ 2.55
BRCC3-202ENST00000340647 TARBP1Q13395 1621 aaKnown RBP30.94■■■□□ 2.54
BRCC3-202ENST00000340647 OSCARQ8IYS5 282 aa30.89■■■□□ 2.54
BRCC3-202ENST00000340647 POLA1P09884 1462 aaPredicted RBP30.88■■■□□ 2.53
BRCC3-202ENST00000340647 EIF4G3O43432 1585 aaKnown RBP30.85■■■□□ 2.53
BRCC3-202ENST00000340647 CUX1P39880 1505 aa30.82■■■□□ 2.52
BRCC3-202ENST00000340647 RAD54L2Q9Y4B4 1467 aa30.78■■■□□ 2.52
BRCC3-202ENST00000340647 AQRO60306 1485 aaKnown RBP eCLIP30.76■■■□□ 2.513e-7■■■□□ 19
BRCC3-202ENST00000340647 FGD5Q6ZNL6 1462 aa30.73■■■□□ 2.51
BRCC3-202ENST00000340647 SOGA1O94964 1423 aa30.69■■■□□ 2.5
BRCC3-202ENST00000340647 CHD1O14646 1710 aa30.6■■■□□ 2.49
BRCC3-202ENST00000340647 TDRD9Q8NDG6 1382 aaKnown RBP30.6■■■□□ 2.49
BRCC3-202ENST00000340647 WDR97A6NE52 1622 aa30.59■■■□□ 2.49
BRCC3-202ENST00000340647 RIMBP3CA6NJZ7 1639 aa30.56■■■□□ 2.48
BRCC3-202ENST00000340647 RIMBP3BA6NNM3 1639 aa30.56■■■□□ 2.48
BRCC3-202ENST00000340647 RIMBP3Q9UFD9 1639 aa30.56■■■□□ 2.48
BRCC3-202ENST00000340647 BIVM-ERCC5R4GMW8 1640 aa30.43■■■□□ 2.46
BRCC3-202ENST00000340647 SNAPC4Q5SXM2 1469 aa30.43■■■□□ 2.46
BRCC3-202ENST00000340647 ARHGEF11O15085 1522 aa30.42■■■□□ 2.46
BRCC3-202ENST00000340647 SYNJ1O43426 1573 aa30.42■■■□□ 2.46
BRCC3-202ENST00000340647 ABCA10Q8WWZ4 1543 aa30.4■■■□□ 2.46
BRCC3-202ENST00000340647 TOP2BQ02880 1626 aa30.4■■■□□ 2.46
BRCC3-202ENST00000340647 ABCA5Q8WWZ7 1642 aa30.38■■■□□ 2.45
BRCC3-202ENST00000340647 PBRM1Q86U86 1689 aa30.38■■■□□ 2.45
BRCC3-202ENST00000340647 GRIN2BQ13224 1484 aa30.37■■■□□ 2.45
BRCC3-202ENST00000340647 WRNQ14191 1432 aaPredicted RBP eCLIP30.35■■■□□ 2.45
BRCC3-202ENST00000340647 GAPVD1Q14C86 1478 aa30.33■■■□□ 2.45
BRCC3-202ENST00000340647 MAGI1Q96QZ7 1491 aaPredicted RBP30.33■■■□□ 2.45
BRCC3-202ENST00000340647 FBLN2P98095 1184 aa30.32■■■□□ 2.44
BRCC3-202ENST00000340647 CLASP1Q7Z460 1538 aa30.24■■■□□ 2.43
BRCC3-202ENST00000340647 SYNJ2O15056 1496 aa30.24■■■□□ 2.43
BRCC3-202ENST00000340647 CYB5RLQ6IPT4 315 aa30.21■■■□□ 2.43
BRCC3-202ENST00000340647 CHMP7Q8WUX9 453 aaPredicted RBP30.17■■■□□ 2.42
BRCC3-202ENST00000340647 ARAP1Q96P48 1450 aa30.13■■■□□ 2.41
BRCC3-202ENST00000340647 ADAMTS12P58397 1594 aa30.08■■■□□ 2.41
BRCC3-202ENST00000340647 GRIN2AQ12879 1464 aa30.01■■■□□ 2.4
BRCC3-202ENST00000340647 ERICH3Q5RHP9 1530 aa30.01■■■□□ 2.39
BRCC3-202ENST00000340647 CEP170Q5SW79 1584 aa29.96■■■□□ 2.39
BRCC3-202ENST00000340647 FHAD1B1AJZ9 1412 aa29.94■■■□□ 2.38
BRCC3-202ENST00000340647 NUP160Q12769 1436 aa29.93■■■□□ 2.38
BRCC3-202ENST00000340647 TRHP20396 242 aaPredicted RBP29.92■■■□□ 2.38
BRCC3-202ENST00000340647 ERCC6L2Q5T890 1561 aa29.86■■■□□ 2.37
BRCC3-202ENST00000340647 SHROOM2Q13796 1616 aa29.81■■■□□ 2.36
BRCC3-202ENST00000340647 IGF1RP08069 1367 aa29.76■■■□□ 2.35
BRCC3-202ENST00000340647 KIF27Q86VH2 1401 aa29.71■■■□□ 2.35
BRCC3-202ENST00000340647 RUSC2Q8N2Y8 1516 aa29.66■■■□□ 2.34
BRCC3-202ENST00000340647 CUL7Q14999 1698 aa29.64■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 133.4 ms