RNA–Protein interactions for RNA: ENST00000340074.9

UBE3B-201, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,448 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-201ENST00000340074 NISCHQ9Y2I1 1504 aa36.95■■■■□ 3.51
UBE3B-201ENST00000340074 CCDC180Q9P1Z9 1646 aa32.87■■■□□ 2.85
UBE3B-201ENST00000340074 ABCC9O60706 1549 aa32.04■■■□□ 2.72
UBE3B-201ENST00000340074 RB1CC1Q8TDY2 1594 aa30.86■■■□□ 2.53
UBE3B-201ENST00000340074 DCAF8L2P0C7V8 631 aa30.84■■■□□ 2.53
UBE3B-201ENST00000340074 NACADO15069 1562 aa30.83■■■□□ 2.53
UBE3B-201ENST00000340074 ZCCHC6Q5VYS8 1495 aaKnown RBP30.8■■■□□ 2.52
UBE3B-201ENST00000340074 MYO15BQ96JP2 1530 aa30.65■■■□□ 2.5
UBE3B-201ENST00000340074 DCAF1Q9Y4B6 1507 aa30.56■■■□□ 2.48
UBE3B-201ENST00000340074 UNC13AQ9UPW8 1703 aa30.31■■■□□ 2.44
UBE3B-201ENST00000340074 SCRIBQ14160 1630 aa30■■■□□ 2.39
UBE3B-201ENST00000340074 BICRAQ9NZM4 1560 aa29.95■■■□□ 2.39
UBE3B-201ENST00000340074 PABPN1Q86U42 306 aaKnown RBP eCLIP29.94■■■□□ 2.38
UBE3B-201ENST00000340074 SHROOM4Q9ULL8 1493 aa29.56■■■□□ 2.32
UBE3B-201ENST00000340074 DNAJC5BQ9UF47 199 aa29.32■■■□□ 2.28
UBE3B-201ENST00000340074 EIF4G1Q04637 1599 aaKnown RBP29.14■■■□□ 2.26
UBE3B-201ENST00000340074 CC2D2AQ9P2K1 1620 aa29.02■■■□□ 2.24
UBE3B-201ENST00000340074 CECR2Q9BXF3 1484 aa28.79■■■□□ 2.2
UBE3B-201ENST00000340074 SMARCA4P51532 1647 aa28.69■■■□□ 2.18
UBE3B-201ENST00000340074 BAZ1AQ9NRL2 1556 aaPredicted RBP28.64■■■□□ 2.18
UBE3B-201ENST00000340074 MROH2BQ7Z745 1585 aa28.5■■■□□ 2.15
UBE3B-201ENST00000340074 ATAD2BQ9ULI0 1458 aa28.47■■■□□ 2.15
UBE3B-201ENST00000340074 SMARCA2P51531 1590 aa28.45■■■□□ 2.15
UBE3B-201ENST00000340074 NCAPD3P42695 1498 aa28.42■■■□□ 2.14
UBE3B-201ENST00000340074 PEG3Q9GZU2 1588 aa28.39■■■□□ 2.13
UBE3B-201ENST00000340074 HMGXB3Q12766 1538 aa28.32■■■□□ 2.12
UBE3B-201ENST00000340074 WIZO95785 1651 aa28.25■■■□□ 2.11
UBE3B-201ENST00000340074 BAZ1BQ9UIG0 1483 aaKnown RBP28.25■■■□□ 2.11
UBE3B-201ENST00000340074 RSF1Q96T23 1441 aaPredicted RBP28.17■■■□□ 2.1
UBE3B-201ENST00000340074 TOP2AP11388 1531 aaKnown RBP27.9■■■□□ 2.06
UBE3B-201ENST00000340074 NESP48681 1621 aa27.77■■■□□ 2.04
UBE3B-201ENST00000340074 LAMC3Q9Y6N6 1575 aa27.7■■■□□ 2.03
UBE3B-201ENST00000340074 CADPSQ9ULU8 1353 aa27.6■■■□□ 2.01
UBE3B-201ENST00000340074 ERCC6Q03468 1493 aa27.6■■■□□ 2.01
UBE3B-201ENST00000340074 CCDC88BA6NC98 1476 aa27.56■■■□□ 2
UBE3B-201ENST00000340074 SUPT5HO00267 1087 aaKnown RBP27.54■■■□□ 2
UBE3B-201ENST00000340074 KIF21AQ7Z4S6 1674 aa27.52■■■□□ 2
UBE3B-201ENST00000340074 PDS5BQ9NTI5 1447 aa27.47■■□□□ 1.99
UBE3B-201ENST00000340074 CFTRP13569 1480 aa27.46■■□□□ 1.99
UBE3B-201ENST00000340074 PRDM2Q13029 1718 aa27.41■■□□□ 1.98
UBE3B-201ENST00000340074 THOC2Q8NI27 1593 aaKnown RBP27.35■■□□□ 1.97
UBE3B-201ENST00000340074 FANCD2Q9BXW9 1451 aa27.31■■□□□ 1.96
UBE3B-201ENST00000340074 CEP164Q9UPV0 1460 aa27.27■■□□□ 1.96
UBE3B-201ENST00000340074 CUX2O14529 1486 aa27.26■■□□□ 1.95
UBE3B-201ENST00000340074 MRC2Q9UBG0 1479 aa27.2■■□□□ 1.94
UBE3B-201ENST00000340074 WDR62O43379 1518 aa27.13■■□□□ 1.93
UBE3B-201ENST00000340074 URB2Q14146 1524 aaKnown RBP27.04■■□□□ 1.92
UBE3B-201ENST00000340074 TOPBP1Q92547 1522 aa26.89■■□□□ 1.9
UBE3B-201ENST00000340074 DNMBPQ6XZF7 1577 aa26.88■■□□□ 1.89
UBE3B-201ENST00000340074 ABCC8Q09428 1581 aa26.87■■□□□ 1.89
UBE3B-201ENST00000340074 CUX1P39880 1505 aa26.74■■□□□ 1.87
UBE3B-201ENST00000340074 IFT140Q96RY7 1462 aa26.68■■□□□ 1.86
UBE3B-201ENST00000340074 POLA1P09884 1462 aaPredicted RBP26.67■■□□□ 1.86
UBE3B-201ENST00000340074 TARBP1Q13395 1621 aaKnown RBP26.63■■□□□ 1.85
UBE3B-201ENST00000340074 FGD5Q6ZNL6 1462 aa26.62■■□□□ 1.85
UBE3B-201ENST00000340074 ZNF608Q9ULD9 1512 aaPredicted RBP26.58■■□□□ 1.85
UBE3B-201ENST00000340074 RAD54L2Q9Y4B4 1467 aa26.56■■□□□ 1.84
UBE3B-201ENST00000340074 BIVM-ERCC5R4GMW8 1640 aa26.56■■□□□ 1.84
UBE3B-201ENST00000340074 WRNQ14191 1432 aaPredicted RBP eCLIP26.55■■□□□ 1.84
UBE3B-201ENST00000340074 SOGA1O94964 1423 aa26.55■■□□□ 1.84
UBE3B-201ENST00000340074 SYNJ1O43426 1573 aa26.54■■□□□ 1.84
UBE3B-201ENST00000340074 TOP2BQ02880 1626 aa26.53■■□□□ 1.84
UBE3B-201ENST00000340074 EIF4G3O43432 1585 aaKnown RBP26.51■■□□□ 1.83
UBE3B-201ENST00000340074 WDR97A6NE52 1622 aa26.46■■□□□ 1.83
UBE3B-201ENST00000340074 AQRO60306 1485 aaKnown RBP eCLIP26.44■■□□□ 1.821e-6■■■■□ 25.4
UBE3B-201ENST00000340074 TDRD9Q8NDG6 1382 aaKnown RBP26.38■■□□□ 1.81
UBE3B-201ENST00000340074 ABCA10Q8WWZ4 1543 aa26.35■■□□□ 1.81
UBE3B-201ENST00000340074 DNAJC5Q9H3Z4 198 aa26.31■■□□□ 1.8
UBE3B-201ENST00000340074 ABCA5Q8WWZ7 1642 aa26.28■■□□□ 1.8
UBE3B-201ENST00000340074 PBRM1Q86U86 1689 aa26.28■■□□□ 1.8
UBE3B-201ENST00000340074 GAPVD1Q14C86 1478 aa26.25■■□□□ 1.79
UBE3B-201ENST00000340074 GRIN2BQ13224 1484 aa26.22■■□□□ 1.79
UBE3B-201ENST00000340074 CHD1O14646 1710 aa26.22■■□□□ 1.79
UBE3B-201ENST00000340074 SNAPC4Q5SXM2 1469 aa26.2■■□□□ 1.78
UBE3B-201ENST00000340074 MAGI1Q96QZ7 1491 aaPredicted RBP26.15■■□□□ 1.78
UBE3B-201ENST00000340074 OSCARQ8IYS5 282 aa26.14■■□□□ 1.77
UBE3B-201ENST00000340074 FBLN2P98095 1184 aa26.09■■□□□ 1.77
UBE3B-201ENST00000340074 SYNJ2O15056 1496 aa26.04■■□□□ 1.76
UBE3B-201ENST00000340074 ERICH3Q5RHP9 1530 aa26.04■■□□□ 1.76
UBE3B-201ENST00000340074 CHMP7Q8WUX9 453 aaPredicted RBP26.02■■□□□ 1.76
UBE3B-201ENST00000340074 ADAMTS12P58397 1594 aa26.02■■□□□ 1.76
UBE3B-201ENST00000340074 KIF27Q86VH2 1401 aa25.99■■□□□ 1.75
UBE3B-201ENST00000340074 TRIM41Q8WV44 630 aa25.99■■□□□ 1.75
UBE3B-201ENST00000340074 FHAD1B1AJZ9 1412 aa25.93■■□□□ 1.74
UBE3B-201ENST00000340074 GRIN2AQ12879 1464 aa25.9■■□□□ 1.74
UBE3B-201ENST00000340074 IGF1RP08069 1367 aa25.87■■□□□ 1.73
UBE3B-201ENST00000340074 CUL7Q14999 1698 aa25.86■■□□□ 1.73
UBE3B-201ENST00000340074 CLASP1Q7Z460 1538 aa25.85■■□□□ 1.73
UBE3B-201ENST00000340074 RUSC2Q8N2Y8 1516 aa25.83■■□□□ 1.73
UBE3B-201ENST00000340074 CEP170Q5SW79 1584 aa25.8■■□□□ 1.72
UBE3B-201ENST00000340074 RIMBP3CA6NJZ7 1639 aa25.79■■□□□ 1.72
UBE3B-201ENST00000340074 RIMBP3BA6NNM3 1639 aa25.79■■□□□ 1.72
UBE3B-201ENST00000340074 RIMBP3Q9UFD9 1639 aa25.79■■□□□ 1.72
UBE3B-201ENST00000340074 NUP160Q12769 1436 aa25.76■■□□□ 1.71
UBE3B-201ENST00000340074 ARHGEF11O15085 1522 aa25.75■■□□□ 1.71
UBE3B-201ENST00000340074 CARMIL1Q5VZK9 1371 aa25.73■■□□□ 1.71
UBE3B-201ENST00000340074 CHIC1Q5VXU3 224 aa25.72■■□□□ 1.71
UBE3B-201ENST00000340074 SHROOM2Q13796 1616 aa25.61■■□□□ 1.69
UBE3B-201ENST00000340074 RAPGEF2Q9Y4G8 1499 aa25.59■■□□□ 1.69
UBE3B-201ENST00000340074 ARAP1Q96P48 1450 aa25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 185 ms