RNA–Protein interactions for RNA: ENST00000339037.3

LINC01116-202, Transcript of long intergenic non-protein coding RNA 1116, humanhuman

TSL 3 BASIC

Gene LINC01116, Length 838 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01116-202ENST00000339037 NISCHQ9Y2I1 1504 aa39.31■■■■□ 3.88
LINC01116-202ENST00000339037 ABCC9O60706 1549 aa35.44■■■■□ 3.26
LINC01116-202ENST00000339037 CCDC180Q9P1Z9 1646 aa35.31■■■■□ 3.24
LINC01116-202ENST00000339037 AEBP2Q6ZN18 517 aaPredicted RBP34.69■■■■□ 3.14
LINC01116-202ENST00000339037 CHIC1Q5VXU3 224 aa34.42■■■■□ 3.1
LINC01116-202ENST00000339037 RB1CC1Q8TDY2 1594 aa33.68■■■□□ 2.98
LINC01116-202ENST00000339037 NACADO15069 1562 aa33.43■■■□□ 2.94
LINC01116-202ENST00000339037 DNAJC5BQ9UF47 199 aa33.31■■■□□ 2.92
LINC01116-202ENST00000339037 DCAF8L2P0C7V8 631 aa33.25■■■□□ 2.91
LINC01116-202ENST00000339037 PABPN1Q86U42 306 aaKnown RBP eCLIP32.99■■■□□ 2.87
LINC01116-202ENST00000339037 MYO15BQ96JP2 1530 aa32.94■■■□□ 2.86
LINC01116-202ENST00000339037 UNC13AQ9UPW8 1703 aa32.85■■■□□ 2.85
LINC01116-202ENST00000339037 BICRAQ9NZM4 1560 aa32.69■■■□□ 2.82
LINC01116-202ENST00000339037 ZCCHC6Q5VYS8 1495 aaKnown RBP32.57■■■□□ 2.8
LINC01116-202ENST00000339037 DCAF1Q9Y4B6 1507 aa32.47■■■□□ 2.79
LINC01116-202ENST00000339037 SHROOM4Q9ULL8 1493 aa32.29■■■□□ 2.76
LINC01116-202ENST00000339037 SCRIBQ14160 1630 aa32.18■■■□□ 2.74
LINC01116-202ENST00000339037 CC2D2AQ9P2K1 1620 aa32■■■□□ 2.71
LINC01116-202ENST00000339037 CECR2Q9BXF3 1484 aa31.96■■■□□ 2.71
LINC01116-202ENST00000339037 EIF4G1Q04637 1599 aaKnown RBP31.92■■■□□ 2.7
LINC01116-202ENST00000339037 NCAPD3P42695 1498 aa30.87■■■□□ 2.53
LINC01116-202ENST00000339037 ATAD2BQ9ULI0 1458 aa30.76■■■□□ 2.51
LINC01116-202ENST00000339037 DNAJC5Q9H3Z4 198 aa30.69■■■□□ 2.5
LINC01116-202ENST00000339037 SMARCA4P51532 1647 aa30.69■■■□□ 2.5
LINC01116-202ENST00000339037 SMARCA2P51531 1590 aa30.68■■■□□ 2.5
LINC01116-202ENST00000339037 ERCC6Q03468 1493 aa30.64■■■□□ 2.5
LINC01116-202ENST00000339037 HMGXB3Q12766 1538 aa30.63■■■□□ 2.49
LINC01116-202ENST00000339037 CUX2O14529 1486 aa30.61■■■□□ 2.49
LINC01116-202ENST00000339037 BAZ1AQ9NRL2 1556 aaPredicted RBP30.54■■■□□ 2.48
LINC01116-202ENST00000339037 BAZ1BQ9UIG0 1483 aaKnown RBP30.47■■■□□ 2.47
LINC01116-202ENST00000339037 NESP48681 1621 aa30.4■■■□□ 2.46
LINC01116-202ENST00000339037 PEG3Q9GZU2 1588 aa30.4■■■□□ 2.46
LINC01116-202ENST00000339037 PHF23Q9BUL5 403 aaPredicted RBP30.39■■■□□ 2.46
LINC01116-202ENST00000339037 MROH2BQ7Z745 1585 aa30.28■■■□□ 2.44
LINC01116-202ENST00000339037 LAMC3Q9Y6N6 1575 aa30.19■■■□□ 2.42
LINC01116-202ENST00000339037 THOC2Q8NI27 1593 aaKnown RBP30.11■■■□□ 2.41
LINC01116-202ENST00000339037 PDS5BQ9NTI5 1447 aa30.05■■■□□ 2.4
LINC01116-202ENST00000339037 KIF21AQ7Z4S6 1674 aa29.98■■■□□ 2.39
LINC01116-202ENST00000339037 CADPSQ9ULU8 1353 aa29.93■■■□□ 2.38
LINC01116-202ENST00000339037 WIZO95785 1651 aa29.89■■■□□ 2.38
LINC01116-202ENST00000339037 MRC2Q9UBG0 1479 aa29.78■■■□□ 2.36
LINC01116-202ENST00000339037 WDR62O43379 1518 aa29.71■■■□□ 2.35
LINC01116-202ENST00000339037 CEP164Q9UPV0 1460 aa29.65■■■□□ 2.34
LINC01116-202ENST00000339037 RSF1Q96T23 1441 aaPredicted RBP29.63■■■□□ 2.33
LINC01116-202ENST00000339037 FANCD2Q9BXW9 1451 aa29.6■■■□□ 2.33
LINC01116-202ENST00000339037 CFTRP13569 1480 aa29.57■■■□□ 2.32
LINC01116-202ENST00000339037 TOP2AP11388 1531 aaKnown RBP29.55■■■□□ 2.32
LINC01116-202ENST00000339037 URB2Q14146 1524 aaKnown RBP29.35■■■□□ 2.29
LINC01116-202ENST00000339037 TRIM41Q8WV44 630 aa29.32■■■□□ 2.28
LINC01116-202ENST00000339037 SENP3Q9H4L4 574 aaPredicted RBP29.24■■■□□ 2.27
LINC01116-202ENST00000339037 CCDC88BA6NC98 1476 aa29.2■■■□□ 2.26
LINC01116-202ENST00000339037 PRDM2Q13029 1718 aa29.2■■■□□ 2.26
LINC01116-202ENST00000339037 OSCARQ8IYS5 282 aa29.19■■■□□ 2.26
LINC01116-202ENST00000339037 IFT140Q96RY7 1462 aa29.05■■■□□ 2.24
LINC01116-202ENST00000339037 TOPBP1Q92547 1522 aa29.01■■■□□ 2.23
LINC01116-202ENST00000339037 ZNF608Q9ULD9 1512 aaPredicted RBP29■■■□□ 2.23
LINC01116-202ENST00000339037 ABCC8Q09428 1581 aa28.95■■■□□ 2.22
LINC01116-202ENST00000339037 DNMBPQ6XZF7 1577 aa28.9■■■□□ 2.22
LINC01116-202ENST00000339037 EIF4G3O43432 1585 aaKnown RBP28.84■■■□□ 2.21
LINC01116-202ENST00000339037 RIMBP3CA6NJZ7 1639 aa28.79■■■□□ 2.2
LINC01116-202ENST00000339037 RIMBP3BA6NNM3 1639 aa28.79■■■□□ 2.2
LINC01116-202ENST00000339037 RIMBP3Q9UFD9 1639 aa28.79■■■□□ 2.2
LINC01116-202ENST00000339037 TARBP1Q13395 1621 aaKnown RBP28.75■■■□□ 2.19
LINC01116-202ENST00000339037 AQRO60306 1485 aaKnown RBP eCLIP28.73■■■□□ 2.19
LINC01116-202ENST00000339037 POLA1P09884 1462 aaPredicted RBP28.72■■■□□ 2.19
LINC01116-202ENST00000339037 ARHGEF11O15085 1522 aa28.72■■■□□ 2.19
LINC01116-202ENST00000339037 CHD1O14646 1710 aa28.6■■■□□ 2.17
LINC01116-202ENST00000339037 RAD54L2Q9Y4B4 1467 aa28.6■■■□□ 2.17
LINC01116-202ENST00000339037 FBLN2P98095 1184 aa28.59■■■□□ 2.17
LINC01116-202ENST00000339037 SOGA1O94964 1423 aa28.58■■■□□ 2.17
LINC01116-202ENST00000339037 TDRD9Q8NDG6 1382 aaKnown RBP28.55■■■□□ 2.16
LINC01116-202ENST00000339037 FGD5Q6ZNL6 1462 aa28.52■■■□□ 2.16
LINC01116-202ENST00000339037 CYB5RLQ6IPT4 315 aa28.51■■■□□ 2.15
LINC01116-202ENST00000339037 CUX1P39880 1505 aa28.47■■■□□ 2.15
LINC01116-202ENST00000339037 WDR97A6NE52 1622 aa28.47■■■□□ 2.15
LINC01116-202ENST00000339037 SNAPC4Q5SXM2 1469 aa28.45■■■□□ 2.14
LINC01116-202ENST00000339037 ARAP1Q96P48 1450 aa28.43■■■□□ 2.14
LINC01116-202ENST00000339037 MAGI1Q96QZ7 1491 aaPredicted RBP28.38■■■□□ 2.13
LINC01116-202ENST00000339037 GRIN2BQ13224 1484 aa28.36■■■□□ 2.13
LINC01116-202ENST00000339037 CHMP7Q8WUX9 453 aaPredicted RBP28.36■■■□□ 2.13
LINC01116-202ENST00000339037 CLASP1Q7Z460 1538 aa28.31■■■□□ 2.12
LINC01116-202ENST00000339037 SYNJ1O43426 1573 aa28.29■■■□□ 2.12
LINC01116-202ENST00000339037 SYNJ2O15056 1496 aa28.28■■■□□ 2.12
LINC01116-202ENST00000339037 SUPT5HO00267 1087 aaKnown RBP28.25■■■□□ 2.11
LINC01116-202ENST00000339037 GAPVD1Q14C86 1478 aa28.24■■■□□ 2.11
LINC01116-202ENST00000339037 TRHP20396 242 aaPredicted RBP28.24■■■□□ 2.11
LINC01116-202ENST00000339037 ABCA10Q8WWZ4 1543 aa28.19■■■□□ 2.1
LINC01116-202ENST00000339037 PBRM1Q86U86 1689 aa28.19■■■□□ 2.1
LINC01116-202ENST00000339037 PLPPR3Q6T4P5 718 aa28.17■■■□□ 2.1
LINC01116-202ENST00000339037 ABCA5Q8WWZ7 1642 aa28.14■■■□□ 2.1
LINC01116-202ENST00000339037 WRNQ14191 1432 aaPredicted RBP eCLIP28.08■■■□□ 2.09
LINC01116-202ENST00000339037 GRIN2AQ12879 1464 aa27.99■■■□□ 2.07
LINC01116-202ENST00000339037 TOP2BQ02880 1626 aa27.98■■■□□ 2.07
LINC01116-202ENST00000339037 BIVM-ERCC5R4GMW8 1640 aa27.96■■■□□ 2.07
LINC01116-202ENST00000339037 ADAMTS12P58397 1594 aa27.95■■■□□ 2.07
LINC01116-202ENST00000339037 NUP160Q12769 1436 aa27.9■■■□□ 2.06
LINC01116-202ENST00000339037 FHAD1B1AJZ9 1412 aa27.88■■■□□ 2.05
LINC01116-202ENST00000339037 CEP170Q5SW79 1584 aa27.87■■■□□ 2.05
LINC01116-202ENST00000339037 ERCC6L2Q5T890 1561 aa27.85■■■□□ 2.05
LINC01116-202ENST00000339037 ERICH3Q5RHP9 1530 aa27.84■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms