RNA–Protein interactions for RNA: ENST00000338468.7

PRKN-201, Transcript of parkin RBR E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene PRKN, Length 1,276 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKN-201ENST00000338468 NISCHQ9Y2I1 1504 aa37.5■■■■□ 3.59
PRKN-201ENST00000338468 ABCC9O60706 1549 aa33.42■■■□□ 2.94
PRKN-201ENST00000338468 CCDC180Q9P1Z9 1646 aa33.36■■■□□ 2.93
PRKN-201ENST00000338468 RB1CC1Q8TDY2 1594 aa31.68■■■□□ 2.66
PRKN-201ENST00000338468 DNAJC5BQ9UF47 199 aa31.59■■■□□ 2.65
PRKN-201ENST00000338468 NACADO15069 1562 aa31.4■■■□□ 2.62
PRKN-201ENST00000338468 DCAF8L2P0C7V8 631 aa31.3■■■□□ 2.6
PRKN-201ENST00000338468 ZCCHC6Q5VYS8 1495 aaKnown RBP31.21■■■□□ 2.59
PRKN-201ENST00000338468 MYO15BQ96JP2 1530 aa31.19■■■□□ 2.58
PRKN-201ENST00000338468 PABPN1Q86U42 306 aaKnown RBP eCLIP31.01■■■□□ 2.55
PRKN-201ENST00000338468 DCAF1Q9Y4B6 1507 aa31.01■■■□□ 2.55
PRKN-201ENST00000338468 UNC13AQ9UPW8 1703 aa30.91■■■□□ 2.54
PRKN-201ENST00000338468 BICRAQ9NZM4 1560 aa30.72■■■□□ 2.51
PRKN-201ENST00000338468 SCRIBQ14160 1630 aa30.45■■■□□ 2.47
PRKN-201ENST00000338468 SHROOM4Q9ULL8 1493 aa30.37■■■□□ 2.45
PRKN-201ENST00000338468 CC2D2AQ9P2K1 1620 aa30.18■■■□□ 2.42
PRKN-201ENST00000338468 CECR2Q9BXF3 1484 aa30.16■■■□□ 2.42
PRKN-201ENST00000338468 EIF4G1Q04637 1599 aaKnown RBP30.03■■■□□ 2.4
PRKN-201ENST00000338468 DNAJC5Q9H3Z4 198 aa29.34■■■□□ 2.29
PRKN-201ENST00000338468 SMARCA4P51532 1647 aa29.12■■■□□ 2.25
PRKN-201ENST00000338468 BAZ1AQ9NRL2 1556 aaPredicted RBP29.03■■■□□ 2.24
PRKN-201ENST00000338468 ATAD2BQ9ULI0 1458 aa29.01■■■□□ 2.23
PRKN-201ENST00000338468 CUX2O14529 1486 aa29■■■□□ 2.23
PRKN-201ENST00000338468 NCAPD3P42695 1498 aa29■■■□□ 2.23
PRKN-201ENST00000338468 ERCC6Q03468 1493 aa28.93■■■□□ 2.22
PRKN-201ENST00000338468 SMARCA2P51531 1590 aa28.92■■■□□ 2.22
PRKN-201ENST00000338468 MROH2BQ7Z745 1585 aa28.92■■■□□ 2.22
PRKN-201ENST00000338468 PEG3Q9GZU2 1588 aa28.84■■■□□ 2.21
PRKN-201ENST00000338468 HMGXB3Q12766 1538 aa28.83■■■□□ 2.21
PRKN-201ENST00000338468 BAZ1BQ9UIG0 1483 aaKnown RBP28.72■■■□□ 2.19
PRKN-201ENST00000338468 WIZO95785 1651 aa28.58■■■□□ 2.17
PRKN-201ENST00000338468 NESP48681 1621 aa28.58■■■□□ 2.17
PRKN-201ENST00000338468 RSF1Q96T23 1441 aaPredicted RBP28.52■■■□□ 2.16
PRKN-201ENST00000338468 THOC2Q8NI27 1593 aaKnown RBP28.41■■■□□ 2.14
PRKN-201ENST00000338468 LAMC3Q9Y6N6 1575 aa28.37■■■□□ 2.13
PRKN-201ENST00000338468 TOP2AP11388 1531 aaKnown RBP28.25■■■□□ 2.11
PRKN-201ENST00000338468 KIF21AQ7Z4S6 1674 aa28.23■■■□□ 2.11
PRKN-201ENST00000338468 PDS5BQ9NTI5 1447 aa28.22■■■□□ 2.11
PRKN-201ENST00000338468 CADPSQ9ULU8 1353 aa28.13■■■□□ 2.09
PRKN-201ENST00000338468 MRC2Q9UBG0 1479 aa28.01■■■□□ 2.07
PRKN-201ENST00000338468 CFTRP13569 1480 aa27.95■■■□□ 2.07
PRKN-201ENST00000338468 WDR62O43379 1518 aa27.95■■■□□ 2.06
PRKN-201ENST00000338468 CCDC88BA6NC98 1476 aa27.95■■■□□ 2.06
PRKN-201ENST00000338468 TRIM41Q8WV44 630 aa27.92■■■□□ 2.06
PRKN-201ENST00000338468 CEP164Q9UPV0 1460 aa27.83■■■□□ 2.04
PRKN-201ENST00000338468 FANCD2Q9BXW9 1451 aa27.81■■■□□ 2.04
PRKN-201ENST00000338468 PRDM2Q13029 1718 aa27.7■■■□□ 2.02
PRKN-201ENST00000338468 SUPT5HO00267 1087 aaKnown RBP27.64■■■□□ 2.02
PRKN-201ENST00000338468 URB2Q14146 1524 aaKnown RBP27.58■■■□□ 2.01
PRKN-201ENST00000338468 OSCARQ8IYS5 282 aa27.56■■■□□ 2
PRKN-201ENST00000338468 TOPBP1Q92547 1522 aa27.36■■□□□ 1.97
PRKN-201ENST00000338468 DNMBPQ6XZF7 1577 aa27.31■■□□□ 1.96
PRKN-201ENST00000338468 ABCC8Q09428 1581 aa27.29■■□□□ 1.96
PRKN-201ENST00000338468 IFT140Q96RY7 1462 aa27.27■■□□□ 1.96
PRKN-201ENST00000338468 RIMBP3CA6NJZ7 1639 aa27.27■■□□□ 1.96
PRKN-201ENST00000338468 RIMBP3BA6NNM3 1639 aa27.27■■□□□ 1.96
PRKN-201ENST00000338468 RIMBP3Q9UFD9 1639 aa27.27■■□□□ 1.96
PRKN-201ENST00000338468 ZNF608Q9ULD9 1512 aaPredicted RBP27.23■■□□□ 1.95
PRKN-201ENST00000338468 ARHGEF11O15085 1522 aa27.16■■□□□ 1.94
PRKN-201ENST00000338468 POLA1P09884 1462 aaPredicted RBP27.13■■□□□ 1.93
PRKN-201ENST00000338468 CUX1P39880 1505 aa27.13■■□□□ 1.93
PRKN-201ENST00000338468 EIF4G3O43432 1585 aaKnown RBP27.11■■□□□ 1.93
PRKN-201ENST00000338468 TARBP1Q13395 1621 aaKnown RBP27.1■■□□□ 1.93
PRKN-201ENST00000338468 FGD5Q6ZNL6 1462 aa27.03■■□□□ 1.92
PRKN-201ENST00000338468 RAD54L2Q9Y4B4 1467 aa27.02■■□□□ 1.92
PRKN-201ENST00000338468 SOGA1O94964 1423 aa26.99■■□□□ 1.91
PRKN-201ENST00000338468 CHD1O14646 1710 aa26.96■■□□□ 1.91
PRKN-201ENST00000338468 AQRO60306 1485 aaKnown RBP eCLIP26.95■■□□□ 1.91
PRKN-201ENST00000338468 CYB5RLQ6IPT4 315 aa26.93■■□□□ 1.9
PRKN-201ENST00000338468 TDRD9Q8NDG6 1382 aaKnown RBP26.87■■□□□ 1.89
PRKN-201ENST00000338468 WRNQ14191 1432 aaPredicted RBP eCLIP26.86■■□□□ 1.89
PRKN-201ENST00000338468 ARAP1Q96P48 1450 aa26.85■■□□□ 1.89
PRKN-201ENST00000338468 SYNJ1O43426 1573 aa26.84■■□□□ 1.89
PRKN-201ENST00000338468 FBLN2P98095 1184 aa26.84■■□□□ 1.89
PRKN-201ENST00000338468 WDR97A6NE52 1622 aa26.83■■□□□ 1.89
PRKN-201ENST00000338468 TOP2BQ02880 1626 aa26.83■■□□□ 1.89
PRKN-201ENST00000338468 BIVM-ERCC5R4GMW8 1640 aa26.83■■□□□ 1.89
PRKN-201ENST00000338468 TRHP20396 242 aaPredicted RBP26.78■■□□□ 1.88
PRKN-201ENST00000338468 ABCA10Q8WWZ4 1543 aa26.77■■□□□ 1.88
PRKN-201ENST00000338468 ABCA5Q8WWZ7 1642 aa26.69■■□□□ 1.86
PRKN-201ENST00000338468 GRIN2BQ13224 1484 aa26.68■■□□□ 1.86
PRKN-201ENST00000338468 SNAPC4Q5SXM2 1469 aa26.68■■□□□ 1.86
PRKN-201ENST00000338468 GAPVD1Q14C86 1478 aa26.68■■□□□ 1.86
PRKN-201ENST00000338468 CLASP1Q7Z460 1538 aa26.65■■□□□ 1.86
PRKN-201ENST00000338468 PBRM1Q86U86 1689 aa26.63■■□□□ 1.85
PRKN-201ENST00000338468 MAGI1Q96QZ7 1491 aaPredicted RBP26.62■■□□□ 1.85
PRKN-201ENST00000338468 CHMP7Q8WUX9 453 aaPredicted RBP26.58■■□□□ 1.85
PRKN-201ENST00000338468 SYNJ2O15056 1496 aa26.53■■□□□ 1.84
PRKN-201ENST00000338468 ADAMTS12P58397 1594 aa26.43■■□□□ 1.82
PRKN-201ENST00000338468 ERICH3Q5RHP9 1530 aa26.43■■□□□ 1.82
PRKN-201ENST00000338468 FHAD1B1AJZ9 1412 aa26.36■■□□□ 1.81
PRKN-201ENST00000338468 GRIN2AQ12879 1464 aa26.36■■□□□ 1.81
PRKN-201ENST00000338468 AEBP2Q6ZN18 517 aaPredicted RBP26.3■■□□□ 1.8
PRKN-201ENST00000338468 KIF27Q86VH2 1401 aa26.29■■□□□ 1.8
PRKN-201ENST00000338468 NUP160Q12769 1436 aa26.27■■□□□ 1.8
PRKN-201ENST00000338468 CEP170Q5SW79 1584 aa26.26■■□□□ 1.79
PRKN-201ENST00000338468 IGF1RP08069 1367 aa26.25■■□□□ 1.79
PRKN-201ENST00000338468 ERCC6L2Q5T890 1561 aa26.16■■□□□ 1.78
PRKN-201ENST00000338468 CUL7Q14999 1698 aa26.14■■□□□ 1.78
PRKN-201ENST00000338468 RUSC2Q8N2Y8 1516 aa26.09■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms