RNA–Protein interactions for RNA: ENST00000338399.8

CDK5RAP3-201, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDK5RAP3, Length 1,866 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-201ENST00000338399 NISCHQ9Y2I1 1504 aa33.9■■■■□ 3.02
CDK5RAP3-201ENST00000338399 CCDC180Q9P1Z9 1646 aa29.66■■■□□ 2.34
CDK5RAP3-201ENST00000338399 ZCCHC6Q5VYS8 1495 aaKnown RBP28.43■■■□□ 2.14
CDK5RAP3-201ENST00000338399 ABCC9O60706 1549 aa28.27■■■□□ 2.12
CDK5RAP3-201ENST00000338399 DCAF8L2P0C7V8 631 aa28.12■■■□□ 2.09
CDK5RAP3-201ENST00000338399 DCAF1Q9Y4B6 1507 aa28■■■□□ 2.07
CDK5RAP3-201ENST00000338399 MYO15BQ96JP2 1530 aa27.74■■■□□ 2.03
CDK5RAP3-201ENST00000338399 NACADO15069 1562 aa27.67■■■□□ 2.02
CDK5RAP3-201ENST00000338399 SHROOM4Q9ULL8 1493 aa27.54■■■□□ 2
CDK5RAP3-201ENST00000338399 RB1CC1Q8TDY2 1594 aa27.5■■□□□ 1.99
CDK5RAP3-201ENST00000338399 SCRIBQ14160 1630 aa27.27■■□□□ 1.96
CDK5RAP3-201ENST00000338399 UNC13AQ9UPW8 1703 aa26.98■■□□□ 1.91
CDK5RAP3-201ENST00000338399 BICRAQ9NZM4 1560 aa26.68■■□□□ 1.86
CDK5RAP3-201ENST00000338399 PABPN1Q86U42 306 aaKnown RBP eCLIP26.62■■□□□ 1.852e-10■■□□□ 14.3
CDK5RAP3-201ENST00000338399 SUPT5HO00267 1087 aaKnown RBP26.39■■□□□ 1.82
CDK5RAP3-201ENST00000338399 CECR2Q9BXF3 1484 aa26.37■■□□□ 1.81
CDK5RAP3-201ENST00000338399 RSF1Q96T23 1441 aaPredicted RBP26.21■■□□□ 1.79
CDK5RAP3-201ENST00000338399 MROH2BQ7Z745 1585 aa26.19■■□□□ 1.78
CDK5RAP3-201ENST00000338399 BAZ1AQ9NRL2 1556 aaPredicted RBP26.19■■□□□ 1.78
CDK5RAP3-201ENST00000338399 SMARCA4P51532 1647 aa26.11■■□□□ 1.77
CDK5RAP3-201ENST00000338399 WIZO95785 1651 aa25.99■■□□□ 1.75
CDK5RAP3-201ENST00000338399 EIF4G1Q04637 1599 aaKnown RBP25.89■■□□□ 1.73
CDK5RAP3-201ENST00000338399 PEG3Q9GZU2 1588 aa25.78■■□□□ 1.72
CDK5RAP3-201ENST00000338399 ATAD2BQ9ULI0 1458 aa25.73■■□□□ 1.71
CDK5RAP3-201ENST00000338399 SMARCA2P51531 1590 aa25.71■■□□□ 1.71
CDK5RAP3-201ENST00000338399 TOP2AP11388 1531 aaKnown RBP25.68■■□□□ 1.7
CDK5RAP3-201ENST00000338399 CC2D2AQ9P2K1 1620 aa25.58■■□□□ 1.69
CDK5RAP3-201ENST00000338399 BAZ1BQ9UIG0 1483 aaKnown RBP25.58■■□□□ 1.68
CDK5RAP3-201ENST00000338399 NCAPD3P42695 1498 aa25.53■■□□□ 1.68
CDK5RAP3-201ENST00000338399 HMGXB3Q12766 1538 aa25.48■■□□□ 1.67
CDK5RAP3-201ENST00000338399 CCDC88BA6NC98 1476 aa25.43■■□□□ 1.66
CDK5RAP3-201ENST00000338399 CHIC1Q5VXU3 224 aa25.13■■□□□ 1.61
CDK5RAP3-201ENST00000338399 DNAJC5BQ9UF47 199 aa25.13■■□□□ 1.61
CDK5RAP3-201ENST00000338399 CFTRP13569 1480 aa24.91■■□□□ 1.58
CDK5RAP3-201ENST00000338399 CADPSQ9ULU8 1353 aa24.88■■□□□ 1.57
CDK5RAP3-201ENST00000338399 ABCC8Q09428 1581 aa24.84■■□□□ 1.57
CDK5RAP3-201ENST00000338399 PRDM2Q13029 1718 aa24.81■■□□□ 1.56
CDK5RAP3-201ENST00000338399 TRIM41Q8WV44 630 aa24.81■■□□□ 1.56
CDK5RAP3-201ENST00000338399 NESP48681 1621 aa24.75■■□□□ 1.55
CDK5RAP3-201ENST00000338399 LAMC3Q9Y6N6 1575 aa24.72■■□□□ 1.55
CDK5RAP3-201ENST00000338399 WRNQ14191 1432 aaPredicted RBP eCLIP24.68■■□□□ 1.54
CDK5RAP3-201ENST00000338399 FANCD2Q9BXW9 1451 aa24.61■■□□□ 1.53
CDK5RAP3-201ENST00000338399 SYNJ1O43426 1573 aa24.6■■□□□ 1.53
CDK5RAP3-201ENST00000338399 PDS5BQ9NTI5 1447 aa24.53■■□□□ 1.52
CDK5RAP3-201ENST00000338399 TOP2BQ02880 1626 aa24.51■■□□□ 1.51
CDK5RAP3-201ENST00000338399 CUX1P39880 1505 aa24.5■■□□□ 1.51
CDK5RAP3-201ENST00000338399 BIVM-ERCC5R4GMW8 1640 aa24.49■■□□□ 1.51
CDK5RAP3-201ENST00000338399 CEP164Q9UPV0 1460 aa24.47■■□□□ 1.51
CDK5RAP3-201ENST00000338399 KIF21AQ7Z4S6 1674 aa24.47■■□□□ 1.51
CDK5RAP3-201ENST00000338399 FAM9AQ8IZU1 332 aaPredicted RBP24.38■■□□□ 1.49
CDK5RAP3-201ENST00000338399 DNMBPQ6XZF7 1577 aa24.35■■□□□ 1.49
CDK5RAP3-201ENST00000338399 TOPBP1Q92547 1522 aa24.32■■□□□ 1.48
CDK5RAP3-201ENST00000338399 URB2Q14146 1524 aaKnown RBP24.32■■□□□ 1.48
CDK5RAP3-201ENST00000338399 SOGA1O94964 1423 aa24.31■■□□□ 1.48
CDK5RAP3-201ENST00000338399 FGD5Q6ZNL6 1462 aa24.27■■□□□ 1.48
CDK5RAP3-201ENST00000338399 RUSC2Q8N2Y8 1516 aa24.25■■□□□ 1.47
CDK5RAP3-201ENST00000338399 ERCC6Q03468 1493 aa24.25■■□□□ 1.47
CDK5RAP3-201ENST00000338399 MRC2Q9UBG0 1479 aa24.22■■□□□ 1.47
CDK5RAP3-201ENST00000338399 EEA1Q15075 1411 aa24.19■■□□□ 1.46
CDK5RAP3-201ENST00000338399 POLA1P09884 1462 aaPredicted RBP24.18■■□□□ 1.46
CDK5RAP3-201ENST00000338399 LOC105371045A0A1W2PR82 267 aa24.18■■□□□ 1.46
CDK5RAP3-201ENST00000338399 RAD54L2Q9Y4B4 1467 aa24.12■■□□□ 1.45
CDK5RAP3-201ENST00000338399 CSRNP3Q8WYN3 585 aa24.11■■□□□ 1.45
CDK5RAP3-201ENST00000338399 WDR62O43379 1518 aa24.11■■□□□ 1.45
CDK5RAP3-201ENST00000338399 THOC2Q8NI27 1593 aaKnown RBP24.09■■□□□ 1.45
CDK5RAP3-201ENST00000338399 CUX2O14529 1486 aa24.08■■□□□ 1.44
CDK5RAP3-201ENST00000338399 KIF27Q86VH2 1401 aa24.07■■□□□ 1.44
CDK5RAP3-201ENST00000338399 EHMT2Q96KQ7 1210 aa24.07■■□□□ 1.44
CDK5RAP3-201ENST00000338399 ABCA10Q8WWZ4 1543 aa24.04■■□□□ 1.44
CDK5RAP3-201ENST00000338399 WDR97A6NE52 1622 aa24■■□□□ 1.43
CDK5RAP3-201ENST00000338399 TARBP1Q13395 1621 aaKnown RBP23.97■■□□□ 1.43
CDK5RAP3-201ENST00000338399 KIF21BO75037 1637 aa23.91■■□□□ 1.42
CDK5RAP3-201ENST00000338399 TDRD9Q8NDG6 1382 aaKnown RBP23.9■■□□□ 1.42
CDK5RAP3-201ENST00000338399 IFT140Q96RY7 1462 aa23.89■■□□□ 1.42
CDK5RAP3-201ENST00000338399 IGF1RP08069 1367 aa23.89■■□□□ 1.42
CDK5RAP3-201ENST00000338399 ABCA5Q8WWZ7 1642 aa23.87■■□□□ 1.41
CDK5RAP3-201ENST00000338399 GOLGA3Q08378 1498 aa23.87■■□□□ 1.41
CDK5RAP3-201ENST00000338399 PRXQ9BXM0 1461 aa23.85■■□□□ 1.41
CDK5RAP3-201ENST00000338399 GAPVD1Q14C86 1478 aa23.84■■□□□ 1.41
CDK5RAP3-201ENST00000338399 RAPGEF2Q9Y4G8 1499 aa23.83■■□□□ 1.41
CDK5RAP3-201ENST00000338399 UBTFP17480 764 aaKnown RBP23.81■■□□□ 1.4
CDK5RAP3-201ENST00000338399 ZNF608Q9ULD9 1512 aaPredicted RBP23.79■■□□□ 1.4
CDK5RAP3-201ENST00000338399 AQRO60306 1485 aaKnown RBP eCLIP23.79■■□□□ 1.41e-7■■■■□ 24.7
CDK5RAP3-201ENST00000338399 ERICH3Q5RHP9 1530 aa23.78■■□□□ 1.4
CDK5RAP3-201ENST00000338399 CARMIL1Q5VZK9 1371 aa23.77■■□□□ 1.39
CDK5RAP3-201ENST00000338399 TNIKQ9UKE5 1360 aa23.75■■□□□ 1.39
CDK5RAP3-201ENST00000338399 PBRM1Q86U86 1689 aa23.74■■□□□ 1.39
CDK5RAP3-201ENST00000338399 CUL7Q14999 1698 aa23.73■■□□□ 1.39
CDK5RAP3-201ENST00000338399 EIF4G3O43432 1585 aaKnown RBP23.7■■□□□ 1.39
CDK5RAP3-201ENST00000338399 GRIN2BQ13224 1484 aa23.68■■□□□ 1.38
CDK5RAP3-201ENST00000338399 CEP162Q5TB80 1403 aa23.61■■□□□ 1.37
CDK5RAP3-201ENST00000338399 ADAMTS12P58397 1594 aa23.58■■□□□ 1.36
CDK5RAP3-201ENST00000338399 FHAD1B1AJZ9 1412 aa23.56■■□□□ 1.36
CDK5RAP3-201ENST00000338399 SNAPC4Q5SXM2 1469 aa23.55■■□□□ 1.36
CDK5RAP3-201ENST00000338399 RANGAP1P46060 587 aaPredicted RBP23.51■■□□□ 1.35
CDK5RAP3-201ENST00000338399 MAGI1Q96QZ7 1491 aaPredicted RBP23.49■■□□□ 1.35
CDK5RAP3-201ENST00000338399 CLIP1P30622 1438 aa23.48■■□□□ 1.35
CDK5RAP3-201ENST00000338399 CTTNBP2Q8WZ74 1663 aa23.46■■□□□ 1.35
CDK5RAP3-201ENST00000338399 SYNJ2O15056 1496 aa23.41■■□□□ 1.34
CDK5RAP3-201ENST00000338399 CHMP7Q8WUX9 453 aaPredicted RBP23.39■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms