RNA–Protein interactions for RNA: ENST00000334731.6

C9orf85-201, Transcript of chromosome 9 open reading frame 85, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf85, Length 1,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf85-201ENST00000334731 NISCHQ9Y2I1 1504 aa27.69■■■□□ 2.02
C9orf85-201ENST00000334731 AEBP2Q6ZN18 517 aaPredicted RBP27.59■■■□□ 2.01
C9orf85-201ENST00000334731 CHIC1Q5VXU3 224 aa26.24■■□□□ 1.79
C9orf85-201ENST00000334731 CCDC180Q9P1Z9 1646 aa24.64■■□□□ 1.53
C9orf85-201ENST00000334731 ABCC9O60706 1549 aa24.52■■□□□ 1.52
C9orf85-201ENST00000334731 SENP3Q9H4L4 574 aaPredicted RBP23.41■■□□□ 1.34
C9orf85-201ENST00000334731 RB1CC1Q8TDY2 1594 aa23.39■■□□□ 1.33
C9orf85-201ENST00000334731 DCAF8L2P0C7V8 631 aa23.35■■□□□ 1.33
C9orf85-201ENST00000334731 NACADO15069 1562 aa23.31■■□□□ 1.32
C9orf85-201ENST00000334731 PHF23Q9BUL5 403 aaPredicted RBP23.13■■□□□ 1.29
C9orf85-201ENST00000334731 MYO15BQ96JP2 1530 aa23.08■■□□□ 1.29
C9orf85-201ENST00000334731 ZCCHC6Q5VYS8 1495 aaKnown RBP22.98■■□□□ 1.27
C9orf85-201ENST00000334731 PABPN1Q86U42 306 aaKnown RBP eCLIP22.93■■□□□ 1.26
C9orf85-201ENST00000334731 DNAJC5BQ9UF47 199 aa22.88■■□□□ 1.25
C9orf85-201ENST00000334731 DCAF1Q9Y4B6 1507 aa22.87■■□□□ 1.25
C9orf85-201ENST00000334731 UNC13AQ9UPW8 1703 aa22.77■■□□□ 1.23
C9orf85-201ENST00000334731 BICRAQ9NZM4 1560 aa22.72■■□□□ 1.23
C9orf85-201ENST00000334731 SCRIBQ14160 1630 aa22.5■■□□□ 1.19
C9orf85-201ENST00000334731 SHROOM4Q9ULL8 1493 aa22.42■■□□□ 1.18
C9orf85-201ENST00000334731 POTEDQ86YR6 584 aa22.27■■□□□ 1.16
C9orf85-201ENST00000334731 EIF4G1Q04637 1599 aaKnown RBP22.14■■□□□ 1.13
C9orf85-201ENST00000334731 CC2D2AQ9P2K1 1620 aa22.12■■□□□ 1.13
C9orf85-201ENST00000334731 CECR2Q9BXF3 1484 aa22.07■■□□□ 1.12
C9orf85-201ENST00000334731 FOXD1Q16676 465 aa21.87■■□□□ 1.09
C9orf85-201ENST00000334731 NCAPD3P42695 1498 aa21.58■■□□□ 1.04
C9orf85-201ENST00000334731 ATAD2BQ9ULI0 1458 aa21.52■■□□□ 1.04
C9orf85-201ENST00000334731 SMARCA4P51532 1647 aa21.5■■□□□ 1.03
C9orf85-201ENST00000334731 BAZ1AQ9NRL2 1556 aaPredicted RBP21.44■■□□□ 1.02
C9orf85-201ENST00000334731 SMARCA2P51531 1590 aa21.44■■□□□ 1.02
C9orf85-201ENST00000334731 HMGXB3Q12766 1538 aa21.36■■□□□ 1.01
C9orf85-201ENST00000334731 MROH2BQ7Z745 1585 aa21.34■■□□□ 1.01
C9orf85-201ENST00000334731 PEG3Q9GZU2 1588 aa21.31■■□□□ 1
C9orf85-201ENST00000334731 BAZ1BQ9UIG0 1483 aaKnown RBP21.3■■□□□ 1
C9orf85-201ENST00000334731 ERCC6Q03468 1493 aa21.13■□□□□ 0.97
C9orf85-201ENST00000334731 NESP48681 1621 aa21.13■□□□□ 0.97
C9orf85-201ENST00000334731 WIZO95785 1651 aa21.05■□□□□ 0.96
C9orf85-201ENST00000334731 RSF1Q96T23 1441 aaPredicted RBP21.02■□□□□ 0.96
C9orf85-201ENST00000334731 CUX2O14529 1486 aa21.01■□□□□ 0.95
C9orf85-201ENST00000334731 LAMC3Q9Y6N6 1575 aa20.97■□□□□ 0.95
C9orf85-201ENST00000334731 PLPPR3Q6T4P5 718 aa20.95■□□□□ 0.94
C9orf85-201ENST00000334731 CADPSQ9ULU8 1353 aa20.94■□□□□ 0.94
C9orf85-201ENST00000334731 PDS5BQ9NTI5 1447 aa20.91■□□□□ 0.94
C9orf85-201ENST00000334731 MSH5O43196 834 aa20.88■□□□□ 0.93
C9orf85-201ENST00000334731 DNAJC5Q9H3Z4 198 aa20.83■□□□□ 0.93
C9orf85-201ENST00000334731 TOP2AP11388 1531 aaKnown RBP20.81■□□□□ 0.92
C9orf85-201ENST00000334731 THOC2Q8NI27 1593 aaKnown RBP20.8■□□□□ 0.92
C9orf85-201ENST00000334731 KIF21AQ7Z4S6 1674 aa20.77■□□□□ 0.91
C9orf85-201ENST00000334731 CFTRP13569 1480 aa20.73■□□□□ 0.91
C9orf85-201ENST00000334731 MRC2Q9UBG0 1479 aa20.69■□□□□ 0.9
C9orf85-201ENST00000334731 FANCD2Q9BXW9 1451 aa20.66■□□□□ 0.9
C9orf85-201ENST00000334731 CEP164Q9UPV0 1460 aa20.64■□□□□ 0.89
C9orf85-201ENST00000334731 CCDC88BA6NC98 1476 aa20.63■□□□□ 0.89
C9orf85-201ENST00000334731 WDR62O43379 1518 aa20.61■□□□□ 0.89
C9orf85-201ENST00000334731 PPP6R1Q9UPN7 881 aa20.54■□□□□ 0.88
C9orf85-201ENST00000334731 URB2Q14146 1524 aaKnown RBP20.47■□□□□ 0.87
C9orf85-201ENST00000334731 ADRA2BP18089 450 aa20.42■□□□□ 0.86
C9orf85-201ENST00000334731 PIAS4Q8N2W9 510 aaPredicted RBP20.38■□□□□ 0.85
C9orf85-201ENST00000334731 PRDM2Q13029 1718 aa20.36■□□□□ 0.85
C9orf85-201ENST00000334731 SUPT5HO00267 1087 aaKnown RBP20.29■□□□□ 0.84
C9orf85-201ENST00000334731 TOPBP1Q92547 1522 aa20.28■□□□□ 0.84
C9orf85-201ENST00000334731 ABCC8Q09428 1581 aa20.26■□□□□ 0.83
C9orf85-201ENST00000334731 IFT140Q96RY7 1462 aa20.24■□□□□ 0.83
C9orf85-201ENST00000334731 DNMBPQ6XZF7 1577 aa20.21■□□□□ 0.83
C9orf85-201ENST00000334731 ZNF608Q9ULD9 1512 aaPredicted RBP20.19■□□□□ 0.82
C9orf85-201ENST00000334731 OSCARQ8IYS5 282 aa20.18■□□□□ 0.82
C9orf85-201ENST00000334731 POLA1P09884 1462 aaPredicted RBP20.11■□□□□ 0.81
C9orf85-201ENST00000334731 AQRO60306 1485 aaKnown RBP eCLIP20.07■□□□□ 0.8
C9orf85-201ENST00000334731 TARBP1Q13395 1621 aaKnown RBP20.06■□□□□ 0.8
C9orf85-201ENST00000334731 SOGA1O94964 1423 aa20.05■□□□□ 0.8
C9orf85-201ENST00000334731 RAD54L2Q9Y4B4 1467 aa20.05■□□□□ 0.8
C9orf85-201ENST00000334731 CUX1P39880 1505 aa20.02■□□□□ 0.8
C9orf85-201ENST00000334731 EIF4G3O43432 1585 aaKnown RBP20.02■□□□□ 0.8
C9orf85-201ENST00000334731 FGD5Q6ZNL6 1462 aa20■□□□□ 0.79
C9orf85-201ENST00000334731 TDRD9Q8NDG6 1382 aaKnown RBP19.99■□□□□ 0.79
C9orf85-201ENST00000334731 TRIM41Q8WV44 630 aa19.99■□□□□ 0.79
C9orf85-201ENST00000334731 FBLN2P98095 1184 aa19.9■□□□□ 0.78
C9orf85-201ENST00000334731 WDR97A6NE52 1622 aa19.84■□□□□ 0.77
C9orf85-201ENST00000334731 GRIN2BQ13224 1484 aa19.82■□□□□ 0.76
C9orf85-201ENST00000334731 SNAPC4Q5SXM2 1469 aa19.82■□□□□ 0.76
C9orf85-201ENST00000334731 WRNQ14191 1432 aaPredicted RBP eCLIP19.8■□□□□ 0.76
C9orf85-201ENST00000334731 CHMP7Q8WUX9 453 aaPredicted RBP19.8■□□□□ 0.76
C9orf85-201ENST00000334731 ABCA10Q8WWZ4 1543 aa19.8■□□□□ 0.76
C9orf85-201ENST00000334731 CHD1O14646 1710 aa19.79■□□□□ 0.76
C9orf85-201ENST00000334731 GAPVD1Q14C86 1478 aa19.79■□□□□ 0.76
C9orf85-201ENST00000334731 MAGI1Q96QZ7 1491 aaPredicted RBP19.78■□□□□ 0.76
C9orf85-201ENST00000334731 ARHGEF11O15085 1522 aa19.77■□□□□ 0.76
C9orf85-201ENST00000334731 RIMBP3CA6NJZ7 1639 aa19.77■□□□□ 0.76
C9orf85-201ENST00000334731 RIMBP3BA6NNM3 1639 aa19.77■□□□□ 0.76
C9orf85-201ENST00000334731 RIMBP3Q9UFD9 1639 aa19.77■□□□□ 0.76
C9orf85-201ENST00000334731 TOP2BQ02880 1626 aa19.74■□□□□ 0.75
C9orf85-201ENST00000334731 SYNJ1O43426 1573 aa19.73■□□□□ 0.75
C9orf85-201ENST00000334731 SYNJ2O15056 1496 aa19.73■□□□□ 0.75
C9orf85-201ENST00000334731 BIVM-ERCC5R4GMW8 1640 aa19.71■□□□□ 0.75
C9orf85-201ENST00000334731 CYB5RLQ6IPT4 315 aa19.7■□□□□ 0.74
C9orf85-201ENST00000334731 ABCA5Q8WWZ7 1642 aa19.69■□□□□ 0.74
C9orf85-201ENST00000334731 CLASP1Q7Z460 1538 aa19.64■□□□□ 0.73
C9orf85-201ENST00000334731 PBRM1Q86U86 1689 aa19.64■□□□□ 0.73
C9orf85-201ENST00000334731 ARAP1Q96P48 1450 aa19.6■□□□□ 0.73
C9orf85-201ENST00000334731 GRIN2AQ12879 1464 aa19.55■□□□□ 0.72
C9orf85-201ENST00000334731 FHAD1B1AJZ9 1412 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms