RNA–Protein interactions for RNA: ENST00000334352.8

USP16-201, Transcript of ubiquitin specific peptidase 16, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USP16, Length 3,004 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP16-201ENST00000334352 NISCHQ9Y2I1 1504 aa16.51■□□□□ 0.23
USP16-201ENST00000334352 CCDC180Q9P1Z9 1646 aa15.08■□□□□ 0
USP16-201ENST00000334352 ABCC9O60706 1549 aa14.36□□□□□ -0.11
USP16-201ENST00000334352 MYO15BQ96JP2 1530 aa14.18□□□□□ -0.14
USP16-201ENST00000334352 NACADO15069 1562 aa14.12□□□□□ -0.15
USP16-201ENST00000334352 RB1CC1Q8TDY2 1594 aa14.11□□□□□ -0.15
USP16-201ENST00000334352 DCAF1Q9Y4B6 1507 aa13.96□□□□□ -0.17
USP16-201ENST00000334352 SHROOM4Q9ULL8 1493 aa13.86□□□□□ -0.19
USP16-201ENST00000334352 UNC13AQ9UPW8 1703 aa13.79□□□□□ -0.2
USP16-201ENST00000334352 ZCCHC6Q5VYS8 1495 aaKnown RBP13.75□□□□□ -0.21
USP16-201ENST00000334352 BICRAQ9NZM4 1560 aa13.68□□□□□ -0.22
USP16-201ENST00000334352 DNAJC5BQ9UF47 199 aa13.35□□□□□ -0.27
USP16-201ENST00000334352 EIF4G1Q04637 1599 aaKnown RBP13.26□□□□□ -0.29
USP16-201ENST00000334352 SCRIBQ14160 1630 aa13.25□□□□□ -0.29
USP16-201ENST00000334352 CC2D2AQ9P2K1 1620 aa13.23□□□□□ -0.29
USP16-201ENST00000334352 PABPN1Q86U42 306 aaKnown RBP eCLIP13.19□□□□□ -0.3
USP16-201ENST00000334352 DCAF8L2P0C7V8 631 aa13.1□□□□□ -0.31
USP16-201ENST00000334352 CECR2Q9BXF3 1484 aa13.08□□□□□ -0.32
USP16-201ENST00000334352 PEG3Q9GZU2 1588 aa12.98□□□□□ -0.33
USP16-201ENST00000334352 NCAPD3P42695 1498 aa12.96□□□□□ -0.33
USP16-201ENST00000334352 HMGXB3Q12766 1538 aa12.96□□□□□ -0.34
USP16-201ENST00000334352 SMARCA2P51531 1590 aa12.9□□□□□ -0.34
USP16-201ENST00000334352 SMARCA4P51532 1647 aa12.88□□□□□ -0.35
USP16-201ENST00000334352 BAZ1AQ9NRL2 1556 aaPredicted RBP12.85□□□□□ -0.35
USP16-201ENST00000334352 ATAD2BQ9ULI0 1458 aa12.81□□□□□ -0.36
USP16-201ENST00000334352 CUX2O14529 1486 aa12.77□□□□□ -0.37
USP16-201ENST00000334352 LAMC3Q9Y6N6 1575 aa12.69□□□□□ -0.38
USP16-201ENST00000334352 BAZ1BQ9UIG0 1483 aaKnown RBP12.62□□□□□ -0.39
USP16-201ENST00000334352 THOC2Q8NI27 1593 aaKnown RBP12.59□□□□□ -0.39
USP16-201ENST00000334352 MROH2BQ7Z745 1585 aa12.58□□□□□ -0.4
USP16-201ENST00000334352 PRDM2Q13029 1718 aa12.51□□□□□ -0.41
USP16-201ENST00000334352 TOP2AP11388 1531 aaKnown RBP12.46□□□□□ -0.41
USP16-201ENST00000334352 WDR62O43379 1518 aa12.46□□□□□ -0.42
USP16-201ENST00000334352 PDS5BQ9NTI5 1447 aa12.46□□□□□ -0.42
USP16-201ENST00000334352 KIF21AQ7Z4S6 1674 aa12.45□□□□□ -0.42
USP16-201ENST00000334352 ERCC6Q03468 1493 aa12.44□□□□□ -0.42
USP16-201ENST00000334352 WIZO95785 1651 aa12.43□□□□□ -0.42
USP16-201ENST00000334352 CADPSQ9ULU8 1353 aa12.42□□□□□ -0.42
USP16-201ENST00000334352 DNAJC5Q9H3Z4 198 aa12.39□□□□□ -0.43
USP16-201ENST00000334352 CFTRP13569 1480 aa12.39□□□□□ -0.43
USP16-201ENST00000334352 NESP48681 1621 aa12.38□□□□□ -0.43
USP16-201ENST00000334352 MRC2Q9UBG0 1479 aa12.38□□□□□ -0.43
USP16-201ENST00000334352 RSF1Q96T23 1441 aaPredicted RBP12.36□□□□□ -0.43
USP16-201ENST00000334352 CEP164Q9UPV0 1460 aa12.27□□□□□ -0.44
USP16-201ENST00000334352 WDR97A6NE52 1622 aa12.26□□□□□ -0.45
USP16-201ENST00000334352 ABCC8Q09428 1581 aa12.24□□□□□ -0.45
USP16-201ENST00000334352 FANCD2Q9BXW9 1451 aa12.24□□□□□ -0.45
USP16-201ENST00000334352 URB2Q14146 1524 aaKnown RBP12.16□□□□□ -0.46
USP16-201ENST00000334352 CCDC88BA6NC98 1476 aa12.15□□□□□ -0.46
USP16-201ENST00000334352 DNMBPQ6XZF7 1577 aa12.14□□□□□ -0.47
USP16-201ENST00000334352 IFT140Q96RY7 1462 aa12.13□□□□□ -0.47
USP16-201ENST00000334352 TARBP1Q13395 1621 aaKnown RBP12.07□□□□□ -0.48
USP16-201ENST00000334352 TOPBP1Q92547 1522 aa12.06□□□□□ -0.48
USP16-201ENST00000334352 EIF4G3O43432 1585 aaKnown RBP11.98□□□□□ -0.49
USP16-201ENST00000334352 POLA1P09884 1462 aaPredicted RBP11.9□□□□□ -0.5
USP16-201ENST00000334352 BIVM-ERCC5R4GMW8 1640 aa11.9□□□□□ -0.5
USP16-201ENST00000334352 MAGI1Q96QZ7 1491 aaPredicted RBP11.88□□□□□ -0.51
USP16-201ENST00000334352 CHD1O14646 1710 aa11.88□□□□□ -0.51
USP16-201ENST00000334352 CLASP1Q7Z460 1538 aa11.88□□□□□ -0.51
USP16-201ENST00000334352 ABCA5Q8WWZ7 1642 aa11.87□□□□□ -0.51
USP16-201ENST00000334352 RIMBP3CA6NJZ7 1639 aa11.87□□□□□ -0.51
USP16-201ENST00000334352 RIMBP3BA6NNM3 1639 aa11.87□□□□□ -0.51
USP16-201ENST00000334352 RIMBP3Q9UFD9 1639 aa11.87□□□□□ -0.51
USP16-201ENST00000334352 CUX1P39880 1505 aa11.87□□□□□ -0.51
USP16-201ENST00000334352 ZNF608Q9ULD9 1512 aaPredicted RBP11.86□□□□□ -0.51
USP16-201ENST00000334352 OSCARQ8IYS5 282 aa11.85□□□□□ -0.51
USP16-201ENST00000334352 PBRM1Q86U86 1689 aa11.85□□□□□ -0.51
USP16-201ENST00000334352 ABCA10Q8WWZ4 1543 aa11.84□□□□□ -0.51
USP16-201ENST00000334352 TOP2BQ02880 1626 aa11.82□□□□□ -0.52
USP16-201ENST00000334352 FGD5Q6ZNL6 1462 aa11.8□□□□□ -0.52
USP16-201ENST00000334352 GRIN2BQ13224 1484 aa11.8□□□□□ -0.52
USP16-201ENST00000334352 SYNJ1O43426 1573 aa11.79□□□□□ -0.52
USP16-201ENST00000334352 SOGA1O94964 1423 aa11.79□□□□□ -0.52
USP16-201ENST00000334352 ARHGEF11O15085 1522 aa11.78□□□□□ -0.52
USP16-201ENST00000334352 SYNJ2O15056 1496 aa11.77□□□□□ -0.53
USP16-201ENST00000334352 SHROOM2Q13796 1616 aa11.75□□□□□ -0.53
USP16-201ENST00000334352 ERICH3Q5RHP9 1530 aa11.75□□□□□ -0.53
USP16-201ENST00000334352 ADAMTS12P58397 1594 aa11.72□□□□□ -0.53
USP16-201ENST00000334352 AQRO60306 1485 aaKnown RBP eCLIP11.71□□□□□ -0.534e-6■■■□□ 15.8
USP16-201ENST00000334352 SNAPC4Q5SXM2 1469 aa11.71□□□□□ -0.53
USP16-201ENST00000334352 RAD54L2Q9Y4B4 1467 aa11.71□□□□□ -0.54
USP16-201ENST00000334352 GAPVD1Q14C86 1478 aa11.7□□□□□ -0.54
USP16-201ENST00000334352 NUP160Q12769 1436 aa11.68□□□□□ -0.54
USP16-201ENST00000334352 ARAP1Q96P48 1450 aa11.67□□□□□ -0.54
USP16-201ENST00000334352 WRNQ14191 1432 aaPredicted RBP eCLIP11.67□□□□□ -0.54
USP16-201ENST00000334352 FHAD1B1AJZ9 1412 aa11.63□□□□□ -0.55
USP16-201ENST00000334352 GRIN2AQ12879 1464 aa11.62□□□□□ -0.55
USP16-201ENST00000334352 CUL7Q14999 1698 aa11.62□□□□□ -0.55
USP16-201ENST00000334352 CEP170Q5SW79 1584 aa11.59□□□□□ -0.55
USP16-201ENST00000334352 TDRD9Q8NDG6 1382 aaKnown RBP11.58□□□□□ -0.56
USP16-201ENST00000334352 RUSC2Q8N2Y8 1516 aa11.55□□□□□ -0.56
USP16-201ENST00000334352 CHMP7Q8WUX9 453 aaPredicted RBP11.47□□□□□ -0.57
USP16-201ENST00000334352 MAPKBP1O60336 1514 aa11.46□□□□□ -0.57
USP16-201ENST00000334352 KIAA0586Q9BVV6 1533 aa11.46□□□□□ -0.58
USP16-201ENST00000334352 TRIM41Q8WV44 630 aa11.44□□□□□ -0.58
USP16-201ENST00000334352 KIF27Q86VH2 1401 aa11.43□□□□□ -0.58
USP16-201ENST00000334352 UHRF1BP1LA0JNW5 1464 aa11.4□□□□□ -0.58
USP16-201ENST00000334352 ERCC6L2Q5T890 1561 aa11.4□□□□□ -0.58
USP16-201ENST00000334352 KIF13AQ9H1H9 1805 aa11.4□□□□□ -0.58
USP16-201ENST00000334352 IGF1RP08069 1367 aa11.4□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms