RNA–Protein interactions for RNA: ENST00000330331.9

RGPD6-202, Transcript of RANBP2-like and GRIP domain containing 6, humanhuman

TSL 2 BASIC

Gene RGPD6, Length 2,848 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RGPD6-202ENST00000330331 NISCHQ9Y2I1 1504 aa29.67■■■□□ 2.34
RGPD6-202ENST00000330331 HRCP23327 699 aa25.85■■□□□ 1.73
RGPD6-202ENST00000330331 CCDC180Q9P1Z9 1646 aa25.84■■□□□ 1.73
RGPD6-202ENST00000330331 PPARGC1BQ86YN6 1023 aaKnown RBP25.45■■□□□ 1.66
RGPD6-202ENST00000330331 PCGF6Q9BYE7 350 aa25.28■■□□□ 1.64
RGPD6-202ENST00000330331 PELP1Q8IZL8 1130 aaKnown RBP25.25■■□□□ 1.63
RGPD6-202ENST00000330331 SUPT5HO00267 1087 aaKnown RBP25.08■■□□□ 1.61
RGPD6-202ENST00000330331 SHROOM4Q9ULL8 1493 aa25.05■■□□□ 1.6
RGPD6-202ENST00000330331 MYO15BQ96JP2 1530 aa24.92■■□□□ 1.58
RGPD6-202ENST00000330331 ZCCHC6Q5VYS8 1495 aaKnown RBP24.92■■□□□ 1.58
RGPD6-202ENST00000330331 CHIC1Q5VXU3 224 aa24.68■■□□□ 1.54
RGPD6-202ENST00000330331 SCAF1Q9H7N4 1312 aaKnown RBP24.68■■□□□ 1.54
RGPD6-202ENST00000330331 DCAF8L2P0C7V8 631 aa24.57■■□□□ 1.52
RGPD6-202ENST00000330331 DCAF1Q9Y4B6 1507 aa24.48■■□□□ 1.51
RGPD6-202ENST00000330331 ABCC9O60706 1549 aa24.48■■□□□ 1.51
RGPD6-202ENST00000330331 MYT1Q01538 1121 aa24.3■■□□□ 1.48
RGPD6-202ENST00000330331 TRIM26Q12899 539 aaPredicted RBP24.28■■□□□ 1.48
RGPD6-202ENST00000330331 LOC105371045A0A1W2PR82 267 aa24.26■■□□□ 1.47
RGPD6-202ENST00000330331 ZEB1P37275 1124 aaPredicted RBP24.11■■□□□ 1.45
RGPD6-202ENST00000330331 NACADO15069 1562 aa24.06■■□□□ 1.44
RGPD6-202ENST00000330331 ACIN1Q9UKV3 1341 aaKnown RBP23.94■■□□□ 1.42
RGPD6-202ENST00000330331 NEUROD1Q13562 356 aa23.91■■□□□ 1.42
RGPD6-202ENST00000330331 RB1CC1Q8TDY2 1594 aa23.86■■□□□ 1.41
RGPD6-202ENST00000330331 SCRIBQ14160 1630 aa23.83■■□□□ 1.41
RGPD6-202ENST00000330331 GTF3C3Q9Y5Q9 886 aa23.82■■□□□ 1.4
RGPD6-202ENST00000330331 CENPBP07199 599 aaPredicted RBP23.56■■□□□ 1.36
RGPD6-202ENST00000330331 UNC13AQ9UPW8 1703 aa23.46■■□□□ 1.35
RGPD6-202ENST00000330331 DIEXFQ68CQ4 756 aaKnown RBP23.4■■□□□ 1.34
RGPD6-202ENST00000330331 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.33■■□□□ 1.33
RGPD6-202ENST00000330331 EHMT2Q96KQ7 1210 aa23.27■■□□□ 1.32
RGPD6-202ENST00000330331 CCER1Q8TC90 406 aaPredicted RBP23.26■■□□□ 1.31
RGPD6-202ENST00000330331 FAM9AQ8IZU1 332 aaPredicted RBP23.25■■□□□ 1.31
RGPD6-202ENST00000330331 YTHDC1Q96MU7 727 aaKnown RBP23.17■■□□□ 1.3
RGPD6-202ENST00000330331 BICRAQ9NZM4 1560 aa23.17■■□□□ 1.3
RGPD6-202ENST00000330331 PABPN1Q86U42 306 aaKnown RBP eCLIP23.1■■□□□ 1.29
RGPD6-202ENST00000330331 CECR2Q9BXF3 1484 aa23.08■■□□□ 1.29
RGPD6-202ENST00000330331 TRIM41Q8WV44 630 aa23.08■■□□□ 1.28
RGPD6-202ENST00000330331 RSF1Q96T23 1441 aaPredicted RBP23.03■■□□□ 1.28
RGPD6-202ENST00000330331 MROH2BQ7Z745 1585 aa22.94■■□□□ 1.26
RGPD6-202ENST00000330331 BCL11AQ9H165 835 aa22.9■■□□□ 1.26
RGPD6-202ENST00000330331 BAZ1AQ9NRL2 1556 aaPredicted RBP22.9■■□□□ 1.26
RGPD6-202ENST00000330331 ZNF316A6NFI3 1004 aaPredicted RBP22.85■■□□□ 1.25
RGPD6-202ENST00000330331 SMARCA4P51532 1647 aa22.82■■□□□ 1.24
RGPD6-202ENST00000330331 MIER1Q8N108 512 aa22.81■■□□□ 1.24
RGPD6-202ENST00000330331 TTBK1Q5TCY1 1321 aaPredicted RBP22.8■■□□□ 1.24
RGPD6-202ENST00000330331 WIZO95785 1651 aa22.79■■□□□ 1.24
RGPD6-202ENST00000330331 ANP32EQ9BTT0 268 aa22.71■■□□□ 1.23
RGPD6-202ENST00000330331 TSHZ2Q9NRE2 1034 aa22.55■■□□□ 1.2
RGPD6-202ENST00000330331 SUPT16HQ9Y5B9 1047 aaKnown RBP22.55■■□□□ 1.2
RGPD6-202ENST00000330331 CSRNP3Q8WYN3 585 aa22.54■■□□□ 1.2
RGPD6-202ENST00000330331 PEG3Q9GZU2 1588 aa22.51■■□□□ 1.19
RGPD6-202ENST00000330331 TOP2AP11388 1531 aaKnown RBP22.49■■□□□ 1.19
RGPD6-202ENST00000330331 EIF4G1Q04637 1599 aaKnown RBP22.47■■□□□ 1.19
RGPD6-202ENST00000330331 ATAD2BQ9ULI0 1458 aa22.42■■□□□ 1.18
RGPD6-202ENST00000330331 SMARCA2P51531 1590 aa22.4■■□□□ 1.18
RGPD6-202ENST00000330331 CLSPNQ9HAW4 1339 aa22.31■■□□□ 1.16
RGPD6-202ENST00000330331 BAZ1BQ9UIG0 1483 aaKnown RBP22.3■■□□□ 1.16
RGPD6-202ENST00000330331 CCDC88BA6NC98 1476 aa22.29■■□□□ 1.16
RGPD6-202ENST00000330331 NCAPD3P42695 1498 aa22.21■■□□□ 1.15
RGPD6-202ENST00000330331 HNRNPUL2Q1KMD3 747 aaKnown RBP22.2■■□□□ 1.14
RGPD6-202ENST00000330331 WRNQ14191 1432 aaPredicted RBP eCLIP22.18■■□□□ 1.14
RGPD6-202ENST00000330331 HMGXB3Q12766 1538 aa22.18■■□□□ 1.14
RGPD6-202ENST00000330331 BCANQ96GW7 911 aa22.16■■□□□ 1.14
RGPD6-202ENST00000330331 CC2D2AQ9P2K1 1620 aa22.14■■□□□ 1.14
RGPD6-202ENST00000330331 PRKCSHP14314 528 aaPredicted RBP22.13■■□□□ 1.13
RGPD6-202ENST00000330331 CEP162Q5TB80 1403 aa22.09■■□□□ 1.13
RGPD6-202ENST00000330331 RBM19Q9Y4C8 960 aaKnown RBP21.99■■□□□ 1.11
RGPD6-202ENST00000330331 FKBP8Q14318 412 aa21.95■■□□□ 1.1
RGPD6-202ENST00000330331 KCNH8Q96L42 1107 aa21.91■■□□□ 1.1
RGPD6-202ENST00000330331 UBTFP17480 764 aaKnown RBP21.9■■□□□ 1.1
RGPD6-202ENST00000330331 TNIKQ9UKE5 1360 aa21.87■■□□□ 1.09
RGPD6-202ENST00000330331 ABCC8Q09428 1581 aa21.87■■□□□ 1.09
RGPD6-202ENST00000330331 MSH5O43196 834 aa21.85■■□□□ 1.09
RGPD6-202ENST00000330331 ITGAEP38570 1179 aa21.81■■□□□ 1.08
RGPD6-202ENST00000330331 SOGA1O94964 1423 aa21.76■■□□□ 1.07
RGPD6-202ENST00000330331 CFTRP13569 1480 aa21.73■■□□□ 1.07
RGPD6-202ENST00000330331 NEFLP07196 543 aa21.69■■□□□ 1.06
RGPD6-202ENST00000330331 ERICH6Q7L0X2 663 aa21.67■■□□□ 1.06
RGPD6-202ENST00000330331 PRDM2Q13029 1718 aa21.66■■□□□ 1.06
RGPD6-202ENST00000330331 CADPSQ9ULU8 1353 aa21.65■■□□□ 1.06
RGPD6-202ENST00000330331 RUSC2Q8N2Y8 1516 aa21.64■■□□□ 1.05
RGPD6-202ENST00000330331 DHX57Q6P158 1386 aaKnown RBP21.63■■□□□ 1.05
RGPD6-202ENST00000330331 DNAJC5BQ9UF47 199 aa21.63■■□□□ 1.05
RGPD6-202ENST00000330331 SYNJ1O43426 1573 aa21.61■■□□□ 1.05
RGPD6-202ENST00000330331 APLP2Q06481 763 aa21.58■■□□□ 1.04
RGPD6-202ENST00000330331 DEKP35659 375 aaKnown RBP21.54■■□□□ 1.04
RGPD6-202ENST00000330331 GOLGA3Q08378 1498 aa21.54■■□□□ 1.04
RGPD6-202ENST00000330331 TRIM52Q96A61 297 aa21.52■■□□□ 1.04
RGPD6-202ENST00000330331 ANO8Q9HCE9 1232 aaPredicted RBP21.52■■□□□ 1.04
RGPD6-202ENST00000330331 FANCIQ9NVI1 1328 aa21.52■■□□□ 1.03
RGPD6-202ENST00000330331 NESP48681 1621 aa21.51■■□□□ 1.03
RGPD6-202ENST00000330331 TOP2BQ02880 1626 aa21.5■■□□□ 1.03
RGPD6-202ENST00000330331 RANGAP1P46060 587 aaPredicted RBP21.49■■□□□ 1.03
RGPD6-202ENST00000330331 BIVM-ERCC5R4GMW8 1640 aa21.48■■□□□ 1.03
RGPD6-202ENST00000330331 DDX10Q13206 875 aaKnown RBP21.47■■□□□ 1.03
RGPD6-202ENST00000330331 LAMC3Q9Y6N6 1575 aa21.46■■□□□ 1.03
RGPD6-202ENST00000330331 EEA1Q15075 1411 aa21.45■■□□□ 1.02
RGPD6-202ENST00000330331 CUX1P39880 1505 aa21.45■■□□□ 1.02
RGPD6-202ENST00000330331 CLIP1P30622 1438 aa21.44■■□□□ 1.02
RGPD6-202ENST00000330331 FANCD2Q9BXW9 1451 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms