RNA–Protein interactions for RNA: ENST00000312547.6

CHMP2A-201, Transcript of charged multivesicular body protein 2A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP2A, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2A-201ENST00000312547 NISCHQ9Y2I1 1504 aa30.09■■■□□ 2.41
CHMP2A-201ENST00000312547 CCDC180Q9P1Z9 1646 aa26.51■■□□□ 1.83
CHMP2A-201ENST00000312547 ABCC9O60706 1549 aa25.58■■□□□ 1.68
CHMP2A-201ENST00000312547 ZCCHC6Q5VYS8 1495 aaKnown RBP25.16■■□□□ 1.62
CHMP2A-201ENST00000312547 DCAF1Q9Y4B6 1507 aa24.94■■□□□ 1.58
CHMP2A-201ENST00000312547 MYO15BQ96JP2 1530 aa24.9■■□□□ 1.58
CHMP2A-201ENST00000312547 DCAF8L2P0C7V8 631 aa24.89■■□□□ 1.58
CHMP2A-201ENST00000312547 NACADO15069 1562 aa24.87■■□□□ 1.57
CHMP2A-201ENST00000312547 RB1CC1Q8TDY2 1594 aa24.76■■□□□ 1.55
CHMP2A-201ENST00000312547 SCRIBQ14160 1630 aa24.22■■□□□ 1.47
CHMP2A-201ENST00000312547 DNAJC5BQ9UF47 199 aa24.17■■□□□ 1.46
CHMP2A-201ENST00000312547 UNC13AQ9UPW8 1703 aa24.14■■□□□ 1.45
CHMP2A-201ENST00000312547 BICRAQ9NZM4 1560 aa24.04■■□□□ 1.44
CHMP2A-201ENST00000312547 PABPN1Q86U42 306 aaKnown RBP eCLIP23.98■■□□□ 1.43
CHMP2A-201ENST00000312547 SHROOM4Q9ULL8 1493 aa23.96■■□□□ 1.43
CHMP2A-201ENST00000312547 CECR2Q9BXF3 1484 aa23.4■■□□□ 1.34
CHMP2A-201ENST00000312547 EIF4G1Q04637 1599 aaKnown RBP23.35■■□□□ 1.33
CHMP2A-201ENST00000312547 BAZ1AQ9NRL2 1556 aaPredicted RBP23.27■■□□□ 1.32
CHMP2A-201ENST00000312547 SMARCA4P51532 1647 aa23.22■■□□□ 1.31
CHMP2A-201ENST00000312547 MROH2BQ7Z745 1585 aa23.19■■□□□ 1.3
CHMP2A-201ENST00000312547 CC2D2AQ9P2K1 1620 aa23.14■■□□□ 1.29
CHMP2A-201ENST00000312547 RSF1Q96T23 1441 aaPredicted RBP23.1■■□□□ 1.29
CHMP2A-201ENST00000312547 ATAD2BQ9ULI0 1458 aa23.04■■□□□ 1.28
CHMP2A-201ENST00000312547 PEG3Q9GZU2 1588 aa23.03■■□□□ 1.28
CHMP2A-201ENST00000312547 SMARCA2P51531 1590 aa23■■□□□ 1.27
CHMP2A-201ENST00000312547 NCAPD3P42695 1498 aa22.98■■□□□ 1.27
CHMP2A-201ENST00000312547 WIZO95785 1651 aa22.91■■□□□ 1.26
CHMP2A-201ENST00000312547 HMGXB3Q12766 1538 aa22.87■■□□□ 1.25
CHMP2A-201ENST00000312547 BAZ1BQ9UIG0 1483 aaKnown RBP22.84■■□□□ 1.25
CHMP2A-201ENST00000312547 SUPT5HO00267 1087 aaKnown RBP22.74■■□□□ 1.23
CHMP2A-201ENST00000312547 TOP2AP11388 1531 aaKnown RBP22.73■■□□□ 1.23
CHMP2A-201ENST00000312547 CCDC88BA6NC98 1476 aa22.47■■□□□ 1.19
CHMP2A-201ENST00000312547 CADPSQ9ULU8 1353 aa22.32■■□□□ 1.16
CHMP2A-201ENST00000312547 CFTRP13569 1480 aa22.28■■□□□ 1.16
CHMP2A-201ENST00000312547 NESP48681 1621 aa22.26■■□□□ 1.15
CHMP2A-201ENST00000312547 LAMC3Q9Y6N6 1575 aa22.25■■□□□ 1.15
CHMP2A-201ENST00000312547 DNAJC5Q9H3Z4 198 aa22.24■■□□□ 1.15
CHMP2A-201ENST00000312547 PDS5BQ9NTI5 1447 aa22.1■■□□□ 1.13
CHMP2A-201ENST00000312547 CUX2O14529 1486 aa22.04■■□□□ 1.12
CHMP2A-201ENST00000312547 FANCD2Q9BXW9 1451 aa22.03■■□□□ 1.12
CHMP2A-201ENST00000312547 PRDM2Q13029 1718 aa22■■□□□ 1.11
CHMP2A-201ENST00000312547 ERCC6Q03468 1493 aa21.98■■□□□ 1.11
CHMP2A-201ENST00000312547 CEP164Q9UPV0 1460 aa21.96■■□□□ 1.11
CHMP2A-201ENST00000312547 KIF21AQ7Z4S6 1674 aa21.94■■□□□ 1.1
CHMP2A-201ENST00000312547 MRC2Q9UBG0 1479 aa21.86■■□□□ 1.09
CHMP2A-201ENST00000312547 THOC2Q8NI27 1593 aaKnown RBP21.82■■□□□ 1.08
CHMP2A-201ENST00000312547 URB2Q14146 1524 aaKnown RBP21.8■■□□□ 1.08
CHMP2A-201ENST00000312547 WDR62O43379 1518 aa21.78■■□□□ 1.08
CHMP2A-201ENST00000312547 ABCC8Q09428 1581 aa21.75■■□□□ 1.07
CHMP2A-201ENST00000312547 WRNQ14191 1432 aaPredicted RBP eCLIP21.74■■□□□ 1.07
CHMP2A-201ENST00000312547 TOPBP1Q92547 1522 aa21.74■■□□□ 1.07
CHMP2A-201ENST00000312547 CUX1P39880 1505 aa21.73■■□□□ 1.07
CHMP2A-201ENST00000312547 DNMBPQ6XZF7 1577 aa21.73■■□□□ 1.07
CHMP2A-201ENST00000312547 SYNJ1O43426 1573 aa21.65■■□□□ 1.06
CHMP2A-201ENST00000312547 TOP2BQ02880 1626 aa21.63■■□□□ 1.05
CHMP2A-201ENST00000312547 BIVM-ERCC5R4GMW8 1640 aa21.61■■□□□ 1.05
CHMP2A-201ENST00000312547 POLA1P09884 1462 aaPredicted RBP21.58■■□□□ 1.05
CHMP2A-201ENST00000312547 FGD5Q6ZNL6 1462 aa21.58■■□□□ 1.05
CHMP2A-201ENST00000312547 CHIC1Q5VXU3 224 aa21.53■■□□□ 1.04
CHMP2A-201ENST00000312547 IFT140Q96RY7 1462 aa21.51■■□□□ 1.03
CHMP2A-201ENST00000312547 SOGA1O94964 1423 aa21.49■■□□□ 1.03
CHMP2A-201ENST00000312547 RAD54L2Q9Y4B4 1467 aa21.48■■□□□ 1.03
CHMP2A-201ENST00000312547 TRIM41Q8WV44 630 aa21.48■■□□□ 1.03
CHMP2A-201ENST00000312547 TARBP1Q13395 1621 aaKnown RBP21.46■■□□□ 1.03
CHMP2A-201ENST00000312547 ABCA10Q8WWZ4 1543 aa21.41■■□□□ 1.02
CHMP2A-201ENST00000312547 ZNF608Q9ULD9 1512 aaPredicted RBP21.37■■□□□ 1.01
CHMP2A-201ENST00000312547 WDR97A6NE52 1622 aa21.35■■□□□ 1.01
CHMP2A-201ENST00000312547 TDRD9Q8NDG6 1382 aaKnown RBP21.33■■□□□ 1
CHMP2A-201ENST00000312547 AQRO60306 1485 aaKnown RBP eCLIP21.3■■□□□ 16e-6■■□□□ 13.3
CHMP2A-201ENST00000312547 EIF4G3O43432 1585 aaKnown RBP21.27■□□□□ 0.99
CHMP2A-201ENST00000312547 ABCA5Q8WWZ7 1642 aa21.26■□□□□ 0.99
CHMP2A-201ENST00000312547 KIF27Q86VH2 1401 aa21.25■□□□□ 0.99
CHMP2A-201ENST00000312547 GAPVD1Q14C86 1478 aa21.25■□□□□ 0.99
CHMP2A-201ENST00000312547 GRIN2BQ13224 1484 aa21.2■□□□□ 0.98
CHMP2A-201ENST00000312547 RUSC2Q8N2Y8 1516 aa21.19■□□□□ 0.98
CHMP2A-201ENST00000312547 IGF1RP08069 1367 aa21.15■□□□□ 0.98
CHMP2A-201ENST00000312547 ERICH3Q5RHP9 1530 aa21.14■□□□□ 0.98
CHMP2A-201ENST00000312547 EEA1Q15075 1411 aa21.12■□□□□ 0.97
CHMP2A-201ENST00000312547 PBRM1Q86U86 1689 aa21.1■□□□□ 0.97
CHMP2A-201ENST00000312547 SNAPC4Q5SXM2 1469 aa21.1■□□□□ 0.97
CHMP2A-201ENST00000312547 MAGI1Q96QZ7 1491 aaPredicted RBP21.1■□□□□ 0.97
CHMP2A-201ENST00000312547 FHAD1B1AJZ9 1412 aa21.04■□□□□ 0.96
CHMP2A-201ENST00000312547 ADAMTS12P58397 1594 aa21.03■□□□□ 0.96
CHMP2A-201ENST00000312547 CSRNP3Q8WYN3 585 aa21.03■□□□□ 0.96
CHMP2A-201ENST00000312547 SYNJ2O15056 1496 aa21.01■□□□□ 0.95
CHMP2A-201ENST00000312547 CARMIL1Q5VZK9 1371 aa21■□□□□ 0.95
CHMP2A-201ENST00000312547 FAM9AQ8IZU1 332 aaPredicted RBP21■□□□□ 0.95
CHMP2A-201ENST00000312547 CUL7Q14999 1698 aa20.99■□□□□ 0.95
CHMP2A-201ENST00000312547 PRXQ9BXM0 1461 aa20.98■□□□□ 0.95
CHMP2A-201ENST00000312547 CHMP7Q8WUX9 453 aaPredicted RBP20.94■□□□□ 0.94
CHMP2A-201ENST00000312547 GRIN2AQ12879 1464 aa20.93■□□□□ 0.94
CHMP2A-201ENST00000312547 FBLN2P98095 1184 aa20.91■□□□□ 0.94
CHMP2A-201ENST00000312547 RAPGEF2Q9Y4G8 1499 aa20.91■□□□□ 0.94
CHMP2A-201ENST00000312547 OSCARQ8IYS5 282 aa20.88■□□□□ 0.93
CHMP2A-201ENST00000312547 RIMBP3CA6NJZ7 1639 aa20.88■□□□□ 0.93
CHMP2A-201ENST00000312547 RIMBP3BA6NNM3 1639 aa20.88■□□□□ 0.93
CHMP2A-201ENST00000312547 RIMBP3Q9UFD9 1639 aa20.88■□□□□ 0.93
CHMP2A-201ENST00000312547 CHD1O14646 1710 aa20.87■□□□□ 0.93
CHMP2A-201ENST00000312547 NUP160Q12769 1436 aa20.85■□□□□ 0.93
CHMP2A-201ENST00000312547 KIF21BO75037 1637 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms