RNA–Protein interactions for RNA: ENST00000308537.4

PDZRN3-202, Transcript of PDZ domain containing ring finger 3, humanhuman

TSL 1 (best) BASIC

Gene PDZRN3, Length 1,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-202ENST00000308537 NISCHQ9Y2I1 1504 aa49.35■■■■■ 5.49
PDZRN3-202ENST00000308537 CCDC180Q9P1Z9 1646 aa44.07■■■■■ 4.65
PDZRN3-202ENST00000308537 ABCC9O60706 1549 aa43.48■■■■■ 4.55
PDZRN3-202ENST00000308537 RB1CC1Q8TDY2 1594 aa41.61■■■■■ 4.25
PDZRN3-202ENST00000308537 NACADO15069 1562 aa41.5■■■■■ 4.23
PDZRN3-202ENST00000308537 MYO15BQ96JP2 1530 aa41.17■■■■■ 4.18
PDZRN3-202ENST00000308537 DCAF8L2P0C7V8 631 aa41.14■■■■■ 4.18
PDZRN3-202ENST00000308537 ZCCHC6Q5VYS8 1495 aaKnown RBP41.05■■■■■ 4.16
PDZRN3-202ENST00000308537 DCAF1Q9Y4B6 1507 aa40.83■■■■■ 4.13
PDZRN3-202ENST00000308537 UNC13AQ9UPW8 1703 aa40.83■■■■■ 4.13
PDZRN3-202ENST00000308537 BICRAQ9NZM4 1560 aa40.54■■■■■ 4.08
PDZRN3-202ENST00000308537 PABPN1Q86U42 306 aaKnown RBP eCLIP40.51■■■■■ 4.08
PDZRN3-202ENST00000308537 DNAJC5BQ9UF47 199 aa40.41■■■■■ 4.06
PDZRN3-202ENST00000308537 SCRIBQ14160 1630 aa40.13■■■■■ 4.01
PDZRN3-202ENST00000308537 SHROOM4Q9ULL8 1493 aa39.94■■■■□ 3.98
PDZRN3-202ENST00000308537 EIF4G1Q04637 1599 aaKnown RBP39.42■■■■□ 3.9
PDZRN3-202ENST00000308537 CC2D2AQ9P2K1 1620 aa39.36■■■■□ 3.89
PDZRN3-202ENST00000308537 CECR2Q9BXF3 1484 aa39.11■■■■□ 3.85
PDZRN3-202ENST00000308537 SMARCA4P51532 1647 aa38.39■■■■□ 3.74
PDZRN3-202ENST00000308537 NCAPD3P42695 1498 aa38.33■■■■□ 3.73
PDZRN3-202ENST00000308537 ATAD2BQ9ULI0 1458 aa38.28■■■■□ 3.72
PDZRN3-202ENST00000308537 BAZ1AQ9NRL2 1556 aaPredicted RBP38.23■■■■□ 3.71
PDZRN3-202ENST00000308537 SMARCA2P51531 1590 aa38.15■■■■□ 3.7
PDZRN3-202ENST00000308537 HMGXB3Q12766 1538 aa38.1■■■■□ 3.69
PDZRN3-202ENST00000308537 PEG3Q9GZU2 1588 aa38.08■■■■□ 3.69
PDZRN3-202ENST00000308537 MROH2BQ7Z745 1585 aa38.05■■■■□ 3.68
PDZRN3-202ENST00000308537 BAZ1BQ9UIG0 1483 aaKnown RBP37.86■■■■□ 3.65
PDZRN3-202ENST00000308537 WIZO95785 1651 aa37.61■■■■□ 3.61
PDZRN3-202ENST00000308537 NESP48681 1621 aa37.56■■■■□ 3.6
PDZRN3-202ENST00000308537 RSF1Q96T23 1441 aaPredicted RBP37.44■■■■□ 3.58
PDZRN3-202ENST00000308537 ERCC6Q03468 1493 aa37.39■■■■□ 3.58
PDZRN3-202ENST00000308537 LAMC3Q9Y6N6 1575 aa37.35■■■■□ 3.57
PDZRN3-202ENST00000308537 CUX2O14529 1486 aa37.26■■■■□ 3.55
PDZRN3-202ENST00000308537 TOP2AP11388 1531 aaKnown RBP37.15■■■■□ 3.54
PDZRN3-202ENST00000308537 CADPSQ9ULU8 1353 aa37.14■■■■□ 3.54
PDZRN3-202ENST00000308537 THOC2Q8NI27 1593 aaKnown RBP37.12■■■■□ 3.53
PDZRN3-202ENST00000308537 KIF21AQ7Z4S6 1674 aa37.11■■■■□ 3.53
PDZRN3-202ENST00000308537 PDS5BQ9NTI5 1447 aa37.03■■■■□ 3.52
PDZRN3-202ENST00000308537 CFTRP13569 1480 aa36.88■■■■□ 3.49
PDZRN3-202ENST00000308537 MRC2Q9UBG0 1479 aa36.75■■■■□ 3.47
PDZRN3-202ENST00000308537 CCDC88BA6NC98 1476 aa36.72■■■■□ 3.47
PDZRN3-202ENST00000308537 FANCD2Q9BXW9 1451 aa36.71■■■■□ 3.47
PDZRN3-202ENST00000308537 WDR62O43379 1518 aa36.7■■■■□ 3.47
PDZRN3-202ENST00000308537 CEP164Q9UPV0 1460 aa36.68■■■■□ 3.46
PDZRN3-202ENST00000308537 DNAJC5Q9H3Z4 198 aa36.63■■■■□ 3.45
PDZRN3-202ENST00000308537 PRDM2Q13029 1718 aa36.58■■■■□ 3.45
PDZRN3-202ENST00000308537 URB2Q14146 1524 aaKnown RBP36.44■■■■□ 3.42
PDZRN3-202ENST00000308537 TOPBP1Q92547 1522 aa36.11■■■■□ 3.37
PDZRN3-202ENST00000308537 DNMBPQ6XZF7 1577 aa36.02■■■■□ 3.36
PDZRN3-202ENST00000308537 ABCC8Q09428 1581 aa35.98■■■■□ 3.35
PDZRN3-202ENST00000308537 SUPT5HO00267 1087 aaKnown RBP35.97■■■■□ 3.35
PDZRN3-202ENST00000308537 IFT140Q96RY7 1462 aa35.93■■■■□ 3.34
PDZRN3-202ENST00000308537 ZNF608Q9ULD9 1512 aaPredicted RBP35.89■■■■□ 3.34
PDZRN3-202ENST00000308537 TARBP1Q13395 1621 aaKnown RBP35.82■■■■□ 3.32
PDZRN3-202ENST00000308537 POLA1P09884 1462 aaPredicted RBP35.79■■■■□ 3.32
PDZRN3-202ENST00000308537 CUX1P39880 1505 aa35.72■■■■□ 3.31
PDZRN3-202ENST00000308537 EIF4G3O43432 1585 aaKnown RBP35.72■■■■□ 3.31
PDZRN3-202ENST00000308537 RAD54L2Q9Y4B4 1467 aa35.63■■■■□ 3.29
PDZRN3-202ENST00000308537 FGD5Q6ZNL6 1462 aa35.61■■■■□ 3.29
PDZRN3-202ENST00000308537 AQRO60306 1485 aaKnown RBP eCLIP35.59■■■■□ 3.29
PDZRN3-202ENST00000308537 SOGA1O94964 1423 aa35.55■■■■□ 3.28
PDZRN3-202ENST00000308537 OSCARQ8IYS5 282 aa35.54■■■■□ 3.28
PDZRN3-202ENST00000308537 WDR97A6NE52 1622 aa35.44■■■■□ 3.26
PDZRN3-202ENST00000308537 TDRD9Q8NDG6 1382 aaKnown RBP35.42■■■■□ 3.26
PDZRN3-202ENST00000308537 CHD1O14646 1710 aa35.35■■■■□ 3.25
PDZRN3-202ENST00000308537 BIVM-ERCC5R4GMW8 1640 aa35.29■■■■□ 3.24
PDZRN3-202ENST00000308537 SYNJ1O43426 1573 aa35.27■■■■□ 3.24
PDZRN3-202ENST00000308537 TOP2BQ02880 1626 aa35.27■■■■□ 3.24
PDZRN3-202ENST00000308537 ABCA10Q8WWZ4 1543 aa35.27■■■■□ 3.24
PDZRN3-202ENST00000308537 WRNQ14191 1432 aaPredicted RBP eCLIP35.23■■■■□ 3.23
PDZRN3-202ENST00000308537 SNAPC4Q5SXM2 1469 aa35.23■■■■□ 3.23
PDZRN3-202ENST00000308537 ABCA5Q8WWZ7 1642 aa35.21■■■■□ 3.23
PDZRN3-202ENST00000308537 GRIN2BQ13224 1484 aa35.2■■■■□ 3.23
PDZRN3-202ENST00000308537 MAGI1Q96QZ7 1491 aaPredicted RBP35.16■■■■□ 3.22
PDZRN3-202ENST00000308537 PBRM1Q86U86 1689 aa35.16■■■■□ 3.22
PDZRN3-202ENST00000308537 RIMBP3CA6NJZ7 1639 aa35.16■■■■□ 3.22
PDZRN3-202ENST00000308537 RIMBP3BA6NNM3 1639 aa35.16■■■■□ 3.22
PDZRN3-202ENST00000308537 RIMBP3Q9UFD9 1639 aa35.16■■■■□ 3.22
PDZRN3-202ENST00000308537 GAPVD1Q14C86 1478 aa35.15■■■■□ 3.22
PDZRN3-202ENST00000308537 TRIM41Q8WV44 630 aa35.1■■■■□ 3.21
PDZRN3-202ENST00000308537 ARHGEF11O15085 1522 aa35.1■■■■□ 3.21
PDZRN3-202ENST00000308537 FBLN2P98095 1184 aa35.06■■■■□ 3.2
PDZRN3-202ENST00000308537 SYNJ2O15056 1496 aa35.04■■■■□ 3.2
PDZRN3-202ENST00000308537 CLASP1Q7Z460 1538 aa35.01■■■■□ 3.19
PDZRN3-202ENST00000308537 CHMP7Q8WUX9 453 aaPredicted RBP34.93■■■■□ 3.18
PDZRN3-202ENST00000308537 ADAMTS12P58397 1594 aa34.87■■■■□ 3.17
PDZRN3-202ENST00000308537 ARAP1Q96P48 1450 aa34.82■■■■□ 3.16
PDZRN3-202ENST00000308537 ERICH3Q5RHP9 1530 aa34.81■■■■□ 3.16
PDZRN3-202ENST00000308537 GRIN2AQ12879 1464 aa34.78■■■■□ 3.16
PDZRN3-202ENST00000308537 FHAD1B1AJZ9 1412 aa34.72■■■■□ 3.15
PDZRN3-202ENST00000308537 NUP160Q12769 1436 aa34.7■■■■□ 3.15
PDZRN3-202ENST00000308537 CEP170Q5SW79 1584 aa34.69■■■■□ 3.14
PDZRN3-202ENST00000308537 CYB5RLQ6IPT4 315 aa34.67■■■■□ 3.14
PDZRN3-202ENST00000308537 SHROOM2Q13796 1616 aa34.52■■■■□ 3.12
PDZRN3-202ENST00000308537 ERCC6L2Q5T890 1561 aa34.51■■■■□ 3.12
PDZRN3-202ENST00000308537 IGF1RP08069 1367 aa34.49■■■■□ 3.11
PDZRN3-202ENST00000308537 KIF27Q86VH2 1401 aa34.49■■■■□ 3.11
PDZRN3-202ENST00000308537 CUL7Q14999 1698 aa34.39■■■■□ 3.1
PDZRN3-202ENST00000308537 RUSC2Q8N2Y8 1516 aa34.38■■■■□ 3.09
PDZRN3-202ENST00000308537 PRG4Q92954 1404 aaPredicted RBP34.21■■■■□ 3.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms